Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 8.6e-279 963.0 477 100.0
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 4.9e-258 894.0 477 92.2
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 1.4e-257 892.5 477 92.0
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 3.2e-257 891.3 477 92.0
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 7.8e-256 886.7 477 92.2
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 1.8e-215 752.7 461 79.4
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 1.2e-211 740.0 474 77.0
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 5.0e-210 734.6 460 78.7
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 5.0e-210 734.6 467 78.2
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 8.4e-210 733.8 462 78.8
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 1.1e-209 733.4 461 77.0
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 2.5e-209 732.3 443 79.5
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 3.2e-209 731.9 474 77.8
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.2e-208 729.9 472 78.8
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 1.8e-207 726.1 453 79.5
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 5.1e-207 724.5 455 78.7
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 8.7e-207 723.8 478 75.9
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 1.5e-206 723.0 436 80.0
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 1.9e-206 722.6 462 76.2
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 1.9e-206 722.6 467 76.0
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 1.6e-205 719.5 453 75.9
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 8.2e-205 717.2 462 74.9
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 8.2e-205 717.2 465 76.1
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 3.1e-204 715.3 468 75.0
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 1.2e-203 713.4 447 78.5
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.6e-203 712.2 456 75.4
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 3.8e-202 708.4 444 77.7
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 3.8e-202 708.4 444 77.3
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 5.0e-202 708.0 460 75.2
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 5.0e-202 708.0 478 74.5
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 1.1e-201 706.8 460 75.0
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 1.4e-201 706.4 460 75.2
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 1.4e-201 706.4 474 73.4
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.5e-201 705.7 470 74.3
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 3.2e-201 705.3 460 75.2
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.2e-201 705.3 460 75.0
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.2e-201 705.3 460 75.0
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 3.2e-201 705.3 460 75.9
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 4.2e-201 704.9 449 76.6
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 5.5e-201 704.5 461 74.4
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 5.5e-201 704.5 450 75.8
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.7e-200 702.2 456 74.1
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.4e-199 699.9 460 74.3
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.4e-199 699.9 460 74.3
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.0e-199 698.7 470 73.2
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 3.0e-199 698.7 470 73.2
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 3.0e-199 698.7 464 73.7
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 3.0e-199 698.7 469 74.0
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 5.1e-199 698.0 460 74.8
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 6.7e-199 697.6 456 75.2
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 1.5e-198 696.4 461 75.3
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 2.5e-198 695.7 448 76.1
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 5.7e-198 694.5 464 73.7
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 9.7e-198 693.7 460 73.9
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 9.7e-198 693.7 467 72.8
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 2.8e-197 692.2 431 76.8
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 3.7e-197 691.8 482 72.0
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 4.8e-197 691.4 471 72.4
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 4.8e-197 691.4 461 74.4
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 4.8e-197 691.4 464 73.3
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 6.3e-197 691.0 458 74.0
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 6.3e-197 691.0 462 73.4
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 8.2e-197 690.6 455 74.5
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 1.1e-196 690.3 462 73.8
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.8e-196 689.5 459 73.4
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 1.8e-196 689.5 447 75.6
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 1.2e-195 686.8 461 73.3
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 2.0e-195 686.0 454 74.2
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 3.4e-195 685.3 460 72.8
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 4.5e-195 684.9 459 73.2
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 7.7e-195 684.1 435 75.9
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 1.7e-194 682.9 448 75.2
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 2.9e-194 682.2 454 74.0
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.9e-194 682.2 474 71.3
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 5.0e-194 681.4 448 75.0
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 5.0e-194 681.4 429 76.0
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 8.5e-194 680.6 458 72.7
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 1.9e-193 679.5 439 75.4
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 1.9e-193 679.5 439 75.4
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 7.2e-193 677.6 467 71.7
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 7.2e-193 677.6 462 70.3
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 1.2e-192 676.8 457 71.1
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 3.6e-192 675.2 461 72.7
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.4e-191 673.3 476 71.0
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 1.1e-190 670.2 462 71.6
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 1.5e-190 669.8 466 71.5
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 2.0e-190 669.5 446 72.9
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 2.6e-190 669.1 476 70.6
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 3.3e-190 668.7 465 70.8
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 1.3e-189 666.8 456 71.3
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 2.2e-189 666.0 445 72.8
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 2.8e-189 665.6 442 73.3
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 4.8e-189 664.8 461 70.7
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 4.8e-189 664.8 454 71.1
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 6.3e-189 664.5 454 70.0
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 6.3e-189 664.5 452 73.2
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 6.3e-189 664.5 427 75.4
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 1.1e-188 663.7 443 73.1
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 3.1e-188 662.1 451 71.8
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 7.0e-188 661.0 461 70.9
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 9.1e-188 660.6 463 70.6
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 1.6e-187 659.8 451 70.3
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 4.5e-187 658.3 451 72.1
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 1.3e-186 656.8 461 69.8
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 1.7e-186 656.4 455 71.0
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 2.2e-186 656.0 472 71.6
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 2.2e-186 656.0 469 69.3
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 5.0e-186 654.8 470 71.3
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 2.5e-185 652.5 446 72.4
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 8.0e-184 647.5 453 70.4
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 8.0e-184 647.5 448 69.4
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 1.0e-183 647.1 448 72.1
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 1.8e-183 646.4 446 69.7
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 3.0e-183 645.6 447 70.0
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 3.0e-183 645.6 447 70.0
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 3.0e-183 645.6 416 74.8
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 1.5e-182 643.3 457 68.7
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 9.7e-182 640.6 459 69.7
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 1.3e-181 640.2 442 69.5
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 2.4e-180 636.0 454 68.7
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 7.0e-180 634.4 446 70.6
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 9.1e-180 634.0 427 70.3
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 2.0e-179 632.9 451 69.6
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 5.9e-179 631.3 384 80.5
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 5.0e-178 628.2 404 74.8
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 5.0e-178 628.2 463 65.7
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 8.5e-178 627.5 404 75.7
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 1.5e-177 626.7 449 67.5
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.5e-177 626.7 454 67.2
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 3.2e-177 625.5 404 74.5
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 5.5e-177 624.8 458 66.8
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 5.5e-177 624.8 448 67.6
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 9.4e-177 624.0 452 67.0
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 1.3e-173 613.6 451 67.2
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 1.5e-169 600.1 433 66.5
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 5.5e-169 598.2 445 67.6
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 2.0e-166 589.7 367 77.1
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 1.4e-164 583.6 394 72.8
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 9.2e-164 580.9 375 74.7
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 2.7e-163 579.3 383 73.6
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.3e-161 572.4 451 64.3
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 3.6e-160 568.9 393 71.5
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 2.3e-151 539.7 393 69.7
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.9e-149 531.9 425 61.9
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 6.0e-147 525.0 444 60.8
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 9.8e-142 507.7 422 59.2
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.1e-140 504.2 445 56.6
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 6.2e-136 488.4 451 58.1
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.8e-135 486.9 436 57.1
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 2.3e-130 469.9 469 53.7
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 4.6e-123 445.7 284 75.0
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 2.0e-118 430.3 318 66.4
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 1.6e-115 420.6 435 50.6
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 2.4e-111 406.8 235 83.0
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 7.4e-105 385.2 427 46.8
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.9e-101 373.2 273 65.9
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 6.0e-99 365.5 231 76.2
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 2.9e-93 346.7 380 45.5
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 5.0e-93 345.9 438 43.8
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 6.5e-69 265.8 155 80.0
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.5e-68 264.6 269 55.0
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 5.2e-66 256.1 471 38.6
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 1.5e-60 238.0 155 74.8
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 2.9e-53 213.8 473 34.5
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.5e-44 184.9 113 72.6
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.5e-41 174.9 95 84.2
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 4.4e-41 173.3 138 64.5
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 1.2e-22 112.1 82 65.9
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 1.0e-21 109.0 84 59.5
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 7.6e-17 92.8 60 70.0
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 2.8e-11 74.3 65 58.5
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 2.4e-07 61.2 43 67.4
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 2.4e-07 61.2 200 26.5
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 5.4e-07 60.1 43 65.1
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 6.0e-06 56.6 105 25.7


User provided reference genes

Program Settings