Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 0.0e+00 1981.1 1165 100.0
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 0.0e+00 1487.6 1188 79.7
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 0.0e+00 1436.8 1189 77.4
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 0.0e+00 1421.8 1190 75.6
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 0.0e+00 1298.5 1224 73.1
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 0.0e+00 1287.3 1257 71.6
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 0.0e+00 1219.1 1196 67.6
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 2.8e-113 414.5 1277 31.2
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 1.6e-108 398.7 1231 35.2
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 3.6e-97 360.9 1013 32.6
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 4.9e-94 350.5 1005 33.3
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 4.6e-92 344.0 1017 32.0
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 3.2e-85 321.2 1000 31.3
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 5.4e-85 320.5 983 32.6
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 9.3e-85 319.7 976 32.7
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 2.5e-82 311.6 975 32.0
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 4.3e-74 284.3 990 30.0
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 4.8e-73 280.8 1037 30.5
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 2.5e-69 268.5 964 29.1
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 7.9e-68 263.5 983 30.3
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.3e-62 246.1 933 29.0
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 1.7e-62 245.7 997 28.9
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 3.8e-62 244.6 697 31.0
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 7.9e-60 236.9 992 28.8
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 1.0e-59 236.5 975 28.6
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 3.3e-58 231.5 1277 29.6
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 2.8e-57 228.4 1011 28.9
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 3.7e-57 228.0 1007 29.1
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.4e-56 226.1 1028 27.9
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 6.9e-56 223.8 959 28.4
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 1.0e-54 219.9 963 27.3
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 5.5e-53 214.2 987 27.3
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 7.2e-53 213.8 983 27.5
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 9.4e-53 213.4 1015 27.4
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 2.1e-52 212.2 997 27.2
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 3.6e-52 211.5 1020 27.3
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 7.9e-52 210.3 1014 27.3
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 1.5e-50 206.1 1003 26.4
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.5e-50 206.1 967 27.1
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.8e-49 201.8 995 27.4
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 4.1e-48 198.0 983 28.6
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 4.1e-48 198.0 978 26.4
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 2.6e-47 195.3 976 28.5
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 2.6e-47 195.3 969 28.5
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 4.5e-47 194.5 988 27.8
Oeu029332.2 Olea europaea HOM05D006657 ORTHO05D005964 2.2e-46 192.2 552 33.0
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 1.1e-45 189.9 954 26.9
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 2.5e-45 188.7 918 27.5
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 5.5e-45 187.6 1040 26.8
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 3.0e-43 181.8 1003 26.7
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 3.9e-43 181.4 977 28.4
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 2.0e-42 179.1 693 28.9
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 5.7e-42 177.6 937 25.5
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 1.6e-39 169.5 1025 25.1
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 2.6e-39 168.7 1016 26.3
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 1.3e-38 166.4 907 25.5
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 8.5e-38 163.7 972 26.2
Lj1A1029T62 Lonicera japonica HOM05D006657 ORTHO05D005964 1.0e-35 156.8 366 37.2
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 6.7e-35 154.1 922 26.2
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 2.2e-33 149.1 950 24.9
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 1.4e-32 146.4 505 29.3
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 5.3e-32 144.4 1018 27.1
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 3.5e-31 141.7 972 25.2
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 7.7e-31 140.6 515 28.9
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 8.5e-30 137.1 497 29.2
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 1.9e-29 136.0 559 26.1
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 2.5e-29 135.6 442 30.1
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 4.2e-29 134.8 939 25.1
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 1.2e-28 133.3 914 25.6
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 1.2e-28 133.3 914 25.6
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 1.4e-27 129.8 970 25.4
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 6.8e-27 127.5 457 28.7
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 8.8e-27 127.1 491 29.7
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 3.4e-26 125.2 423 29.3
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 7.5e-26 124.0 973 25.3
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 2.3e-22 112.5 1038 24.4
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 3.8e-22 111.7 965 24.5
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 5.0e-22 111.3 1000 23.8
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 6.6e-22 110.9 429 27.5
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 8.6e-22 110.5 879 24.5
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 7.2e-21 107.5 249 31.3
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 9.5e-21 107.1 451 26.4
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 9.5e-21 107.1 975 22.6
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 1.2e-20 106.7 901 23.9
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 2.1e-20 105.9 713 22.7
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 2.8e-20 105.5 325 32.0
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 6.1e-20 104.4 265 32.5
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 8.0e-20 104.0 270 31.9
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.4e-19 103.2 614 25.2
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 1.8e-19 102.8 277 31.8
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 5.2e-19 101.3 161 42.9
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 5.2e-19 101.3 297 32.3
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 1.7e-17 96.3 1081 23.8
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 6.3e-17 94.4 1004 22.8
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 6.3e-17 94.4 951 24.0
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 1.1e-16 93.6 413 26.4
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 3.1e-16 92.0 946 21.8
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 1.6e-15 89.7 366 27.9
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 1.6e-15 89.7 587 24.7
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 3.5e-15 88.6 177 39.5
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 1.0e-14 87.0 1020 22.5
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 1.3e-14 86.7 904 23.7
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 3.9e-14 85.1 241 32.0
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 1.1e-13 83.6 459 24.8
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 5.6e-13 81.3 269 28.6
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 5.6e-13 81.3 269 28.6
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 1.6e-12 79.7 207 31.4
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 1.6e-12 79.7 207 31.4
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.6e-12 79.7 242 29.3
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 2.8e-12 79.0 374 27.8
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 3.6e-12 78.6 274 29.2
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 3.6e-12 78.6 256 29.7
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 4.7e-12 78.2 268 27.2
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 6.1e-12 77.8 225 30.2
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 6.1e-12 77.8 225 30.2
Nitab4.5_0006821g0050 Nicotiana tabacum HOM05D001799 ORTHO05D001655 6.1e-12 77.8 62 64.5
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 1.0e-11 77.0 210 27.1
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 1.0e-11 77.0 439 26.0
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 1.4e-11 76.6 225 29.3
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 1.8e-11 76.3 1077 23.0
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 2.3e-11 75.9 237 30.4
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 4.0e-11 75.1 479 23.8
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 6.8e-11 74.3 201 34.3
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 1.2e-10 73.6 201 31.3
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 1.5e-10 73.2 191 32.5
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 1.5e-10 73.2 191 32.5
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 2.0e-10 72.8 219 29.7
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 2.6e-10 72.4 98 44.9
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 3.4e-10 72.0 267 27.0
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 3.4e-10 72.0 219 29.7
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 5.8e-10 71.2 219 29.2
Glyma.13G227600 Glycine max HOM05D013241 ORTHO05D011012 9.8e-10 70.5 433 22.9
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 2.9e-09 68.9 212 26.4
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 4.9e-09 68.2 219 28.8
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 4.9e-09 68.2 219 28.8
Sabra11G0134500 Salix brachista HOM05D011672 ORTHO05D011012 4.9e-09 68.2 306 24.5
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 4.9e-09 68.2 241 27.4
Potri.011G149601 Populus trichocarpa HOM05D011672 ORTHO05D011012 6.4e-09 67.8 442 24.0
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 1.1e-08 67.0 855 22.8
Ca_00458_v3 Cicer arietinum L. HOM05D013241 ORTHO05D011012 4.1e-08 65.1 411 24.1
Lj6g0008807 Lotus japonicus HOM05D013241 ORTHO05D011012 4.1e-08 65.1 419 23.2
CDE04G2546 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 5.4e-08 64.7 304 23.7
FAN04G0229 Fragaria x ananassa HOM05D013249 ORTHO05D011012 7.0e-08 64.3 398 23.1
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 9.2e-08 63.9 202 28.7
Eucgr.K00452 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.2e-07 63.5 324 27.8
Phvul.006G174000 Phaseolus vulgaris HOM05D013241 ORTHO05D011012 1.2e-07 63.5 448 23.7
TPR.G4557 Trifolium pratense HOM05D013241 ORTHO05D011012 1.2e-07 63.5 443 23.9
Duzib084G0474 Durio zibethinus HOM05D011672 ORTHO05D011012 1.6e-07 63.2 376 24.5
CDE02G0079 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 7.8e-07 60.8 346 22.5
Lalb_Chr18g0054711 Lupinus albus HOM05D013241 ORTHO05D011012 1.0e-06 60.5 186 24.7
TWI81G0792 Tripterygium wilfordii HOM05D011672 ORTHO05D011012 1.3e-06 60.1 447 22.8
arahy.Tifrunner.gnm1.ann1.62N0H4 Arachis hypogaea HOM05D000074 ORTHO05D011012 3.0e-06 58.9 462 23.2
arahy.Tifrunner.gnm1.ann1.69Z0CE Arachis hypogaea HOM05D013241 ORTHO05D011012 3.0e-06 58.9 218 28.0
VMungo0540G2099 Vigna mungo HOM05D013241 ORTHO05D011012 3.0e-06 58.9 438 24.7
CiPaw.12G074500 Carya illinoinensis HOM05D011672 ORTHO05D011012 3.9e-06 58.5 305 26.6


User provided reference genes

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