Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 8.9e-162 573.5 290 100.0
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 1.3e-141 506.5 293 87.0
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 1.7e-141 506.1 293 86.3
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 8.6e-141 503.8 293 86.3
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 4.8e-131 471.5 291 81.8
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 2.2e-128 462.6 291 81.1
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 1.2e-105 387.1 279 68.5
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 6.5e-104 381.3 302 66.9
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 5.5e-103 378.3 284 70.8
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 3.6e-102 375.6 277 66.8
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 1.5e-100 370.2 287 65.2
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 2.2e-99 366.3 224 82.6
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 2.1e-94 349.7 279 65.6
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 1.4e-93 347.1 278 67.3
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 5.1e-93 345.1 287 64.8
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 1.5e-92 343.6 291 62.9
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 7.4e-92 341.3 291 63.2
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 1.4e-90 337.0 283 61.5
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 5.3e-90 335.1 284 64.8
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 2.0e-89 333.2 300 59.7
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 5.9e-89 331.6 272 62.5
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 5.0e-88 328.6 294 58.5
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 5.0e-88 328.6 285 61.8
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 8.5e-88 327.8 280 63.6
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 1.4e-87 327.0 232 71.1
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 1.9e-87 326.6 285 59.6
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 4.2e-87 325.5 309 59.2
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 1.2e-86 323.9 298 59.7
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 2.7e-86 322.8 273 63.0
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 4.7e-86 322.0 278 62.6
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 8.8e-85 317.8 278 59.0
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 8.8e-85 317.8 280 59.3
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 1.5e-84 317.0 293 58.7
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 3.3e-84 315.8 266 62.4
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 9.7e-84 314.3 298 57.7
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 1.3e-83 313.9 221 70.6
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 2.2e-83 313.2 271 60.9
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 2.8e-83 312.8 268 61.6
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 4.8e-83 312.0 261 61.7
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 4.8e-83 312.0 282 59.2
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 4.8e-83 312.0 270 61.5
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 1.1e-82 310.8 275 59.3
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 1.8e-82 310.1 290 58.3
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 5.3e-82 308.5 271 60.1
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 5.3e-82 308.5 280 58.6
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 1.2e-81 307.4 209 69.4
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 1.6e-81 307.0 278 61.2
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 3.5e-81 305.8 265 59.2
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.0e-80 304.3 288 58.7
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.2e-80 303.1 288 59.0
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.9e-80 302.8 287 59.2
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 3.8e-80 302.4 273 59.7
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 3.8e-80 302.4 270 60.0
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 5.0e-80 302.0 291 55.7
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 5.0e-80 302.0 292 58.2
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 8.5e-80 301.2 268 61.6
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 8.5e-80 301.2 289 58.1
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 1.1e-79 300.8 286 56.6
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 1.1e-79 300.8 268 59.7
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 2.5e-79 299.7 296 55.4
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 4.2e-79 298.9 273 59.7
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 9.4e-79 297.7 211 66.8
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 9.4e-79 297.7 241 66.4
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 1.6e-78 297.0 207 67.1
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 6.1e-78 295.0 274 58.4
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 8.0e-78 294.7 278 58.3
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 1.0e-77 294.3 275 56.4
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 1.4e-77 293.9 274 57.7
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 4.0e-77 292.4 284 55.6
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 4.0e-77 292.4 290 57.9
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 5.2e-77 292.0 327 51.1
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 6.7e-77 291.6 281 57.3
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 8.8e-77 291.2 295 54.2
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 8.8e-77 291.2 278 57.6
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 1.2e-76 290.8 281 55.5
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 1.2e-76 290.8 296 54.4
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 1.5e-76 290.4 284 57.4
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 2.0e-76 290.0 274 59.5
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 2.6e-76 289.7 284 56.3
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 2.6e-76 289.7 276 54.3
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 3.3e-76 289.3 216 65.3
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 5.7e-76 288.5 224 61.2
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 5.7e-76 288.5 287 57.1
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 1.3e-75 287.3 304 52.0
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 2.8e-75 286.2 295 54.2
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 2.8e-75 286.2 229 62.0
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 4.8e-75 285.4 273 53.8
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 6.3e-75 285.0 284 56.7
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 6.3e-75 285.0 284 56.7
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 1.6e-73 280.4 271 56.1
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 2.0e-73 280.0 302 52.3
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 2.2e-72 276.6 215 63.7
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 8.5e-72 274.6 206 66.0
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 8.5e-72 274.6 270 52.6
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 1.1e-71 274.2 294 52.7
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 1.1e-71 274.2 219 62.1
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 1.5e-71 273.9 270 54.1
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 7.2e-71 271.6 221 61.5
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 7.2e-71 271.6 221 61.5
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 9.4e-71 271.2 284 53.5
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 2.3e-69 266.5 207 63.3
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 3.0e-69 266.2 269 53.9
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 4.0e-69 265.8 201 65.7
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 7.5e-68 261.5 210 60.5
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 2.8e-67 259.6 207 61.8
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 1.1e-66 257.7 203 60.1
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 1.8e-66 256.9 237 56.1
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 1.8e-66 256.9 237 56.1
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 1.0e-64 251.1 206 58.7
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 6.5e-64 248.4 207 58.9
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 3.6e-54 216.1 204 54.4
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 3.0e-53 213.0 218 53.2
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 6.8e-53 211.8 214 55.6
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 1.1e-50 204.5 225 46.7
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 5.0e-48 195.7 165 63.6
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 2.0e-41 173.7 176 54.5
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 5.0e-40 169.1 215 42.3
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 8.6e-40 168.3 223 48.0
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 7.3e-39 165.2 234 42.7
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 1.1e-37 161.4 214 41.6
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 5.2e-37 159.1 222 46.4
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 3.4e-36 156.4 206 41.7
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 1.3e-35 154.5 126 62.7
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 1.6e-33 147.5 181 47.5
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 1.2e-28 131.3 118 57.6
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 1.2e-28 131.3 78 82.1
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.3e-27 127.9 113 60.2
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 2.4e-21 107.1 147 41.5
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 1.9e-18 97.4 152 44.1
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 7.1e-18 95.5 61 70.5
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 7.6e-12 75.5 208 31.7
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 2.2e-11 73.9 95 41.1
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 1.9e-10 70.9 80 47.5


User provided reference genes

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