Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G3.36 Capsicum annuum HOM05D000054 ORTHO05D024789 2.7e-95 352.1 185 100.0
CAN.G1172.5 Capsicum annuum HOM05D000054 ORTHO05D003784 3.0e-22 109.4 62 90.3
Peaxi162Scf00006g00402 Petunia axillaris HOM05D000054 ORTHO05D003784 3.3e-21 105.9 62 87.1
PGSC0003DMG400044745 Solanum tuberosum HOM05D000054 ORTHO05D003784 5.7e-21 105.1 62 87.1
Solyc09g074240.1 Solanum lycopersicum HOM05D000054 ORTHO05D003784 3.7e-20 102.4 62 83.9
Sopen09g029060 Solanum pennellii HOM05D000054 ORTHO05D003784 3.7e-20 102.4 62 83.9
CAN.G1682.8 Capsicum annuum HOM05D000054 ORTHO05D003784 7.0e-19 98.2 68 72.1
Nitab4.5_0001323g0160 Nicotiana tabacum HOM05D000054 ORTHO05D003784 1.6e-18 97.1 70 71.4
EL10Ac4g10092 Beta vulgaris HOM05D000054 ORTHO05D003784 1.3e-17 94.0 76 61.8
Haze_04780 Corylus avellana HOM05D000054 ORTHO05D003784 1.3e-17 94.0 68 67.6
GSVIVG01011046001 Vitis vinifera HOM05D000054 ORTHO05D003784 1.3e-17 94.0 59 76.3
TAR362G1332 Trochodendron aralioides HOM05D000054 ORTHO05D003784 2.9e-17 92.8 62 71.0
CANSAT25G0670 Cannabis sativa HOM05D000054 ORTHO05D003784 3.8e-17 92.4 67 65.7
Cfa006070 Carpinus fangiana HOM05D000054 ORTHO05D003784 3.8e-17 92.4 70 64.3
ClCG09G006710 Citrullus lanatus HOM05D000054 ORTHO05D003784 3.8e-17 92.4 63 69.8
Hma1.2p1_0257F.1_g103980 Hydrangea macrophylla HOM05D000054 ORTHO05D003784 5.0e-17 92.0 70 62.9
SalBow3G4619 Salvia bowleyana HOM05D000054 ORTHO05D003784 5.0e-17 92.0 62 72.6
Atru.chr5.1320 Acer truncatum HOM05D000054 ORTHO05D003784 6.5e-17 91.7 70 64.3
CiPaw.07G096800 Carya illinoinensis HOM05D000054 ORTHO05D003784 6.5e-17 91.7 70 62.9
Dinv11272 Davidia involucrata HOM05D000054 ORTHO05D003784 6.5e-17 91.7 70 62.9
CiPaw.07G096900 Carya illinoinensis HOM05D000054 ORTHO05D003784 8.5e-17 91.3 70 62.9
Peaxi162Scf01039g00236 Petunia axillaris HOM05D000054 ORTHO05D003784 8.5e-17 91.3 60 75.0
CsaV3_1G012960 Cucumis sativus L. HOM05D000054 ORTHO05D003784 1.1e-16 90.9 63 68.3
TAR633G1170 Trochodendron aralioides HOM05D000054 ORTHO05D003784 1.1e-16 90.9 62 72.6
AUR62006561 Chenopodium quinoa HOM05D000054 ORTHO05D003784 1.5e-16 90.5 80 57.5
Eucgr.H01603 Eucalyptus grandis HOM05D000054 ORTHO05D003784 1.5e-16 90.5 70 64.3
PSO210G7090 Papaver somniferum HOM05D000054 ORTHO05D003784 1.5e-16 90.5 60 70.0
TAR633G2737 Trochodendron aralioides HOM05D000054 ORTHO05D003784 1.5e-16 90.5 62 71.0
Aqoxy5G00577 Aquilegia oxysepala HOM05D000054 ORTHO05D003784 1.9e-16 90.1 70 61.4
TWI59G0058 Tripterygium wilfordii HOM05D000054 ORTHO05D003784 1.9e-16 90.1 70 62.9
HanXRQChr15g0466541 Helianthus annuus HOM05D000054 ORTHO05D003784 2.5e-16 89.7 86 55.8
TWI14G1430 Tripterygium wilfordii HOM05D000054 ORTHO05D003784 2.5e-16 89.7 70 62.9
MSTRG.18206 Avicennia marina HOM05D000054 ORTHO05D003784 3.2e-16 89.4 60 71.7
Rhsim01G0278100 Rhododendron simsii HOM05D000054 ORTHO05D003784 3.2e-16 89.4 70 61.4
Ciclev10023732m.g Citrus clementina HOM05D000054 ORTHO05D003784 4.2e-16 89.0 62 69.4
MELO3C005042.2 Cucumis melo HOM05D000054 ORTHO05D003784 4.2e-16 89.0 59 72.9
Manes.05G071200 Manihot esculenta HOM05D000054 ORTHO05D003784 4.2e-16 89.0 74 60.8
Ah.06g194760 Amaranthus hybridus HOM05D000054 ORTHO05D003784 5.5e-16 88.6 64 65.6
Cpa.g.sc9.138 Carica papaya HOM05D000054 ORTHO05D003784 5.5e-16 88.6 63 66.7
AUR62000216 Chenopodium quinoa HOM05D000054 ORTHO05D003784 5.5e-16 88.6 70 64.3
ECA247G2999 Erigeron canadensis HOM05D000054 ORTHO05D003784 5.5e-16 88.6 63 69.8
MBI19_g27935_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D003784 5.5e-16 88.6 70 61.4
CSS0028404 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D003784 7.2e-16 88.2 72 63.9
PGR119G0564 Punica granatum HOM05D000054 ORTHO05D003784 7.2e-16 88.2 70 62.9
Actinidia21086 Actinidia chinensis HOM05D000054 ORTHO05D003784 9.4e-16 87.8 60 70.0
CSS0008061 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D003784 9.4e-16 87.8 55 76.4
Cc01_g19920 Coffea canephora HOM05D000054 ORTHO05D003784 9.4e-16 87.8 71 60.6
Lj1C42T5 Lonicera japonica HOM05D000054 ORTHO05D003784 9.4e-16 87.8 61 72.1
Potri.014G136400 Populus trichocarpa HOM05D000054 ORTHO05D003784 1.2e-15 87.4 70 58.6
QL12p023087 Quercus lobata HOM05D000054 ORTHO05D003784 1.2e-15 87.4 70 60.0
CiPaw.07G097100 Carya illinoinensis HOM05D000054 ORTHO05D003784 1.6e-15 87.0 60 70.0
Oeu011184.1 Olea europaea HOM05D000054 ORTHO05D003784 1.6e-15 87.0 60 70.0
Ciclev10024255m.g Citrus clementina HOM05D000054 ORTHO05D003784 2.1e-15 86.7 62 66.1
Lsat_1_v5_gn_9_1760 Lactuca sativa HOM05D000205 ORTHO05D003784 2.1e-15 86.7 60 71.7
Sabra14G0102900 Salix brachista HOM05D000054 ORTHO05D003784 2.1e-15 86.7 70 58.6
Sc17g0003890 Simmondsia chinensis HOM05D000054 ORTHO05D003784 2.1e-15 86.7 62 69.4
Migut.D01001 Erythranthe guttata HOM05D000054 ORTHO05D003784 2.7e-15 86.3 62 69.4
Sed0015258 Sechium edule HOM05D000054 ORTHO05D003784 2.7e-15 86.3 63 65.1
Glyma.02G150600 Glycine max HOM05D000054 ORTHO05D003784 3.6e-15 85.9 70 61.4
Glyma.10G023400 Glycine max HOM05D000054 ORTHO05D003784 3.6e-15 85.9 70 61.4
Oeu001448.1 Olea europaea HOM05D000054 ORTHO05D003784 4.7e-15 85.5 60 68.3
CSS0024403 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D003784 6.1e-15 85.1 54 74.1
RcHm_v2.0_Chr6g0292151 Rosa chinensis HOM05D000054 ORTHO05D003784 6.1e-15 85.1 70 62.9
TPR.G16926 Trifolium pratense HOM05D000054 ORTHO05D003784 6.1e-15 85.1 62 71.0
ECA247G2237 Erigeron canadensis HOM05D000054 ORTHO05D003784 8.0e-15 84.7 75 57.3
Lalb_Chr01g0020271 Lupinus albus HOM05D000054 ORTHO05D003784 8.0e-15 84.7 61 72.1
VMungo0720G2241 Vigna mungo HOM05D000054 ORTHO05D003784 8.0e-15 84.7 70 60.0
Phvul.007G168100 Phaseolus vulgaris HOM05D000054 ORTHO05D003784 1.0e-14 84.3 70 60.0
Potri.014G136466 Populus trichocarpa HOM05D000054 ORTHO05D003784 1.0e-14 84.3 70 57.1
Thecc.01G286700 Theobroma cacao HOM05D000054 ORTHO05D003784 1.0e-14 84.3 70 57.1
DCAR_002767 Daucus carota HOM05D000054 ORTHO05D003784 1.4e-14 84.0 70 58.6
Gohir.D12G006400 Gossypium hirsutum HOM05D000054 ORTHO05D003784 1.4e-14 84.0 60 66.7
Gorai.008G006500 Gossypium raimondii HOM05D000054 ORTHO05D003784 1.4e-14 84.0 60 66.7
RcHm_v2.0_Chr6g0292131 Rosa chinensis HOM05D000054 ORTHO05D024789 1.4e-14 84.0 54 74.1
Duzib138G0059 Durio zibethinus HOM05D000054 ORTHO05D003784 1.8e-14 83.6 63 63.5
FvH4_2g24291 Fragaria vesca HOM05D000054 ORTHO05D003784 1.8e-14 83.6 62 71.0
FAN15G2702 Fragaria x ananassa HOM05D000054 ORTHO05D003784 1.8e-14 83.6 62 71.0
FAN20G3019 Fragaria x ananassa HOM05D000054 ORTHO05D003784 1.8e-14 83.6 62 71.0
HanXRQChr10g0283001 Helianthus annuus HOM05D000054 ORTHO05D003784 1.8e-14 83.6 60 68.3
HPP92_016924 Vanilla planifolia HOM05D000054 ORTHO05D003784 1.8e-14 83.6 70 58.6
Gohir.D08G202956 Gossypium hirsutum HOM05D000054 ORTHO05D003784 2.3e-14 83.2 64 60.9
Gorai.004G214700 Gossypium raimondii HOM05D000054 ORTHO05D003784 2.3e-14 83.2 64 60.9
MD11G1293500 Malus domestica HOM05D000054 ORTHO05D003784 2.3e-14 83.2 70 61.4
Gohir.A11G119401 Gossypium hirsutum HOM05D000054 ORTHO05D003784 3.0e-14 82.8 70 55.7
Prupe.8G248800 Prunus persica HOM05D000054 ORTHO05D003784 3.0e-14 82.8 62 66.1
Actinidia24865 Actinidia chinensis HOM05D000054 ORTHO05D003784 4.0e-14 82.4 60 68.3
Gorai.007G133100 Gossypium raimondii HOM05D000054 ORTHO05D003784 4.0e-14 82.4 70 55.7
Ca_08552_v3 Cicer arietinum L. HOM05D000054 ORTHO05D003784 5.2e-14 82.0 62 71.0
Ca_08586_v3 Cicer arietinum L. HOM05D000054 ORTHO05D003784 5.2e-14 82.0 62 71.0
COL.COLO4_09153 Corchorus olitorius HOM05D000054 ORTHO05D003784 5.2e-14 82.0 63 66.7
Lj5g0019972 Lotus japonicus HOM05D000054 ORTHO05D003784 5.2e-14 82.0 90 48.9
Psat6g169680 Pisum sativum HOM05D000054 ORTHO05D003784 5.2e-14 82.0 63 69.8
Gohir.A12G007000 Gossypium hirsutum HOM05D000054 ORTHO05D003784 8.8e-14 81.3 60 63.3
Sed0017761 Sechium edule HOM05D000054 ORTHO05D003784 8.8e-14 81.3 63 61.9
DCAR_002768 Daucus carota HOM05D000054 ORTHO05D003784 1.2e-13 80.9 58 67.2
Glyma.03G149000 Glycine max HOM05D000054 ORTHO05D003784 1.2e-13 80.9 61 67.2
Glyma.19G152200 Glycine max HOM05D000054 ORTHO05D003784 1.2e-13 80.9 61 67.2
Gohir.A08G184600 Gossypium hirsutum HOM05D000054 ORTHO05D003784 1.2e-13 80.9 63 60.3
Phvul.001G146900 Phaseolus vulgaris HOM05D000054 ORTHO05D003784 1.5e-13 80.5 61 65.6
DCAR_005827 Daucus carota HOM05D000054 ORTHO05D003784 2.0e-13 80.1 70 55.7
Lj1g0027768 Lotus japonicus HOM05D000054 ORTHO05D003784 2.0e-13 80.1 65 64.6
SEGI_12482 Sequoiadendron giganteum HOM05D000054 ORTHO05D003784 2.0e-13 80.1 70 48.6
Cfa006527 Carpinus fangiana HOM05D000054 ORTHO05D003784 2.6e-13 79.7 69 60.9
Psat3g066760 Pisum sativum HOM05D000054 ORTHO05D003784 2.6e-13 79.7 62 66.1
ATR0580G022 Amborella trichopoda HOM05D000054 ORTHO05D003784 3.4e-13 79.3 70 55.7
arahy.Tifrunner.gnm1.ann1.5QD0EV Arachis hypogaea HOM05D000054 ORTHO05D003784 3.4e-13 79.3 61 65.6
MD03G1272600 Malus domestica HOM05D000054 ORTHO05D003784 3.4e-13 79.3 62 64.5
VMungo1383G1639 Vigna mungo HOM05D000054 ORTHO05D003784 3.4e-13 79.3 61 63.9
DCAR_018380 Daucus carota HOM05D000054 ORTHO05D003784 4.4e-13 79.0 62 64.5
THA.LOC104807107 Tarenaya hassleriana HOM05D000054 ORTHO05D003784 4.4e-13 79.0 63 61.9
Ca_10391_v3 Cicer arietinum L. HOM05D000054 ORTHO05D003784 5.7e-13 78.6 63 66.7
SGA_v2.0_scaffold11G05782 Striga asiatica HOM05D000054 ORTHO05D003784 5.7e-13 78.6 60 66.7
Medtr7g094100 Medicago truncatula HOM05D000054 ORTHO05D003784 9.8e-13 77.8 62 66.1
BcaC01g05663 Brassica carinata HOM05D000054 ORTHO05D003784 3.7e-12 75.9 63 65.1
BolC3t14748H Brassica oleracea HOM05D000054 ORTHO05D003784 3.7e-12 75.9 63 65.1
Lalb_Chr06g0163221 Lupinus albus HOM05D000054 ORTHO05D003784 3.7e-12 75.9 71 56.3
Lalb_Chr21g0306641 Lupinus albus HOM05D000054 ORTHO05D003784 3.7e-12 75.9 71 54.9
Carub.0004s3073 Capsella rubella HOM05D000054 ORTHO05D003784 1.1e-11 74.3 63 63.5
TPR.G39952 Trifolium pratense HOM05D000054 ORTHO05D003784 1.1e-11 74.3 62 61.3
AL4G47610 Arabidopsis lyrata HOM05D000054 ORTHO05D003784 1.4e-11 73.9 63 63.5
BcaB01g03845 Brassica carinata HOM05D000054 ORTHO05D003784 1.4e-11 73.9 63 63.5
A03p20080 Brassica napus HOM05D000054 ORTHO05D003784 1.4e-11 73.9 63 63.5
C03p23520 Brassica napus HOM05D000054 ORTHO05D003784 1.4e-11 73.9 63 63.5
BraA03t11258Z Brassica rapa HOM05D000054 ORTHO05D003784 1.4e-11 73.9 63 63.5
Eucgr.H04437 Eucalyptus grandis HOM05D000054 ORTHO05D003784 1.4e-11 73.9 62 58.1
AT2G48010 Arabidopsis thaliana HOM05D000054 ORTHO05D003784 1.8e-11 73.6 63 63.5
CAN.G20.29 Capsicum annuum HOM05D000054 ORTHO05D024789 1.8e-11 73.6 54 70.4
CDE09G0371 Ceratophyllum demersum HOM05D000054 ORTHO05D003784 1.8e-11 73.6 70 45.7
CDE02G4796 Ceratophyllum demersum HOM05D000054 ORTHO05D003784 2.4e-11 73.2 70 47.1
arahy.Tifrunner.gnm1.ann1.LDUN37 Arachis hypogaea HOM05D000054 ORTHO05D003784 3.1e-11 72.8 67 61.2
Haze_04258 Corylus avellana HOM05D000054 ORTHO05D003784 3.1e-11 72.8 65 60.0
DCAR_002769 Daucus carota HOM05D000054 ORTHO05D003784 3.1e-11 72.8 70 51.4
Medtr1g089600 Medicago truncatula HOM05D000054 ORTHO05D003784 3.1e-11 72.8 99 44.4
Thhalv10016382m.g Eutrema salsugineum HOM05D000054 ORTHO05D003784 5.4e-11 72.0 63 61.9
Sc17g0003870 Simmondsia chinensis HOM05D000054 ORTHO05D024789 5.4e-11 72.0 65 60.0
Aa31LG1G29430 Aethionema arabicum HOM05D000054 ORTHO05D003784 7.0e-11 71.6 63 60.3
Zm00001eb231410 Zea mays HOM05D000054 ORTHO05D003784 9.1e-11 71.2 72 52.8
Os01g0384300 Oryza sativa ssp. japonica HOM05D000054 ORTHO05D003784 1.2e-10 70.9 72 54.2
Sp4g18630 Schrenkiella parvula HOM05D000054 ORTHO05D003784 1.2e-10 70.9 63 61.9
CARHR143400 Cardamine hirsuta HOM05D000054 ORTHO05D003784 1.6e-10 70.5 63 61.9
PGR031G3260 Punica granatum HOM05D000054 ORTHO05D003784 1.6e-10 70.5 59 59.3
CiPaw.07G013000 Carya illinoinensis HOM05D000054 ORTHO05D003784 2.7e-10 69.7 54 55.6
Prupe.6G332100 Prunus persica HOM05D000054 ORTHO05D003784 2.7e-10 69.7 55 60.0
arahy.Tifrunner.gnm1.ann1.L5HKCU Arachis hypogaea HOM05D000054 ORTHO05D003784 3.5e-10 69.3 63 61.9
Gorai.004G214800 Gossypium raimondii HOM05D000054 ORTHO05D003784 4.5e-10 68.9 56 60.7
Mapoly0094s0064 Marchantia polymorpha HOM05D000054 ORTHO05D003784 5.9e-10 68.6 68 42.6
Gohir.D08G202970 Gossypium hirsutum HOM05D000054 ORTHO05D003784 1.0e-09 67.8 56 60.7
Actinidia05733 Actinidia chinensis HOM05D000054 ORTHO05D003784 1.3e-09 67.4 56 62.5
FvH4_6g05020 Fragaria vesca HOM05D000054 ORTHO05D003784 1.3e-09 67.4 56 62.5
FAN14G4207 Fragaria x ananassa HOM05D000054 ORTHO05D003784 1.3e-09 67.4 56 62.5
FAN14G5301 Fragaria x ananassa HOM05D000054 ORTHO05D003784 1.3e-09 67.4 56 62.5
Gohir.A08G184700 Gossypium hirsutum HOM05D000054 ORTHO05D003784 2.9e-09 66.2 56 58.9
Glyma.19G152300 Glycine max HOM05D000054 ORTHO05D003784 3.8e-09 65.9 60 65.0
Dinv22918 Davidia involucrata HOM05D000054 ORTHO05D003784 5.0e-09 65.5 61 55.7
FAN02G1461 Fragaria x ananassa HOM05D000054 ORTHO05D003784 5.0e-09 65.5 57 59.6
Phvul.001G147001 Phaseolus vulgaris HOM05D000054 ORTHO05D003784 8.6e-09 64.7 56 58.9
RcHm_v2.0_Chr3g0453521 Rosa chinensis HOM05D000054 ORTHO05D003784 8.6e-09 64.7 52 61.5
Actinidia23602 Actinidia chinensis HOM05D000054 ORTHO05D003784 2.5e-08 63.2 57 57.9
MD04G1211500 Malus domestica HOM05D000054 ORTHO05D003784 4.2e-08 62.4 45 64.4
Thecc.05G298400 Theobroma cacao HOM05D000054 ORTHO05D003784 5.5e-08 62.0 59 54.2
DCAR_002766 Daucus carota HOM05D000054 ORTHO05D003784 9.5e-08 61.2 45 60.0
MD12G1226500 Malus domestica HOM05D000054 ORTHO05D003784 2.1e-07 60.1 55 54.5
Prupe.6G332200 Prunus persica HOM05D000054 ORTHO05D003784 3.6e-07 59.3 60 50.0
VMungo1383G2340 Vigna mungo HOM05D000054 ORTHO05D003784 8.0e-07 58.2 56 57.1
FAN05G1605 Fragaria x ananassa HOM05D000054 ORTHO05D003784 3.0e-06 56.2 64 45.3
FAN05G4458 Fragaria x ananassa HOM05D000054 ORTHO05D003784 3.0e-06 56.2 64 45.3
Potri.005G040200 Populus trichocarpa HOM05D000054 ORTHO05D003784 4.0e-06 55.8 37 64.9
CSS0040493 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D003784 5.2e-06 55.5 61 45.9
FvH4_6g05000 Fragaria vesca HOM05D000054 ORTHO05D003784 5.2e-06 55.5 64 45.3
Potri.013G028000 Populus trichocarpa HOM05D000054 ORTHO05D003784 5.2e-06 55.5 44 56.8
COL.COLO4_13554 Corchorus olitorius HOM05D000054 ORTHO05D025175 6.8e-06 55.1 45 55.6


User provided reference genes

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