Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 4.7e-261 904.0 470 100.0
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 5.5e-238 827.4 470 91.1
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 5.2e-236 820.8 470 90.6
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 4.6e-216 754.6 463 86.0
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.2e-200 703.4 451 83.4
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 4.9e-194 681.4 419 85.2
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 4.2e-153 545.4 291 94.8
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.8e-151 540.0 473 60.9
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 3.0e-151 539.3 471 59.7
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 2.0e-150 536.6 478 59.8
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 4.3e-150 535.4 471 59.7
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 7.4e-150 534.6 474 59.9
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 2.8e-149 532.7 467 61.2
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 1.4e-148 530.4 463 60.9
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 4.1e-148 528.9 467 61.0
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 2.6e-147 526.2 471 58.8
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 5.9e-147 525.0 483 59.0
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 2.9e-146 522.7 464 58.0
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 1.6e-144 516.9 475 56.4
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 1.6e-144 516.9 462 61.5
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.8e-143 513.5 455 60.4
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 1.8e-143 513.5 464 59.5
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 2.3e-143 513.1 464 58.6
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 3.9e-143 512.3 470 58.3
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 3.7e-141 505.8 471 57.7
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 3.7e-141 505.8 472 56.6
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 3.7e-141 505.8 472 56.4
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 8.2e-141 504.6 464 56.9
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 1.1e-140 504.2 460 58.7
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 2.4e-140 503.1 470 55.1
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 2.4e-140 503.1 472 55.9
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 5.3e-140 501.9 471 58.2
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 1.5e-139 500.4 463 57.9
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 2.0e-139 500.0 474 57.4
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 1.3e-138 497.3 465 58.1
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 6.5e-138 495.0 471 57.3
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 5.5e-137 491.9 437 60.9
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 3.9e-135 485.7 474 55.7
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 6.7e-135 485.0 474 55.5
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 2.6e-134 483.0 472 55.3
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 1.3e-133 480.7 467 55.5
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 1.3e-133 480.7 470 54.5
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 1.8e-132 476.9 470 54.7
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 4.1e-132 475.7 470 54.5
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.2e-131 474.2 467 54.6
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 1.2e-131 474.2 410 61.0
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 2.0e-131 473.4 472 55.1
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.2e-130 469.9 265 89.4
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 5.0e-130 468.8 464 54.5
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 1.9e-129 466.8 469 54.6
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 2.5e-129 466.5 473 55.2
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 6.1e-128 461.8 474 52.1
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 5.2e-127 458.8 380 63.9
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 2.0e-126 456.8 467 51.8
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 2.6e-126 456.4 465 51.6
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 3.3e-126 456.1 502 51.4
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 4.8e-125 452.2 474 50.8
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 1.1e-124 451.1 477 52.6
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 1.4e-124 450.7 694 41.2
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 2.4e-124 449.9 429 57.6
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 3.1e-124 449.5 470 51.3
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 4.1e-124 449.1 376 60.4
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 7.0e-124 448.4 472 52.1
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 9.1e-124 448.0 466 50.2
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.2e-123 447.6 474 52.5
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 4.5e-123 445.7 467 50.5
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.5e-123 445.7 472 52.1
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 2.2e-122 443.4 473 54.8
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 2.2e-122 443.4 470 50.9
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 3.2e-121 439.5 466 48.9
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 3.2e-121 439.5 466 49.8
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 3.2e-121 439.5 466 49.8
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 7.2e-121 438.3 467 51.0
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 8.0e-120 434.9 372 60.2
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 1.0e-119 434.5 471 52.2
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 4.0e-119 432.6 465 51.4
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.3e-117 427.6 465 52.5
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 1.1e-116 424.5 393 57.8
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 2.0e-115 420.2 441 51.2
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 2.0e-115 420.2 536 47.0
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 4.5e-115 419.1 322 64.9
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 2.1e-112 410.2 471 50.3
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 6.1e-112 408.7 478 49.6
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 2.3e-111 406.8 393 52.9
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 3.0e-111 406.4 397 52.4
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.9e-107 392.1 555 43.8
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 6.6e-106 388.7 444 49.1
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 2.5e-105 386.7 493 46.5
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 5.2e-103 379.0 355 55.8
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 6.8e-103 378.6 435 47.1
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 1.3e-101 374.4 410 50.7
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 4.9e-101 372.5 291 63.9
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 1.6e-99 367.5 423 50.6
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 2.7e-99 366.7 390 52.6
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 1.1e-97 361.3 482 44.2
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 6.8e-95 352.1 485 44.9
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 1.4e-92 344.4 371 51.5
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 7.1e-92 342.0 362 51.1
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 2.7e-91 340.1 511 44.2
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 2.3e-90 337.0 475 44.0
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 2.3e-90 337.0 254 67.3
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 4.7e-88 329.3 285 60.0
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 8.9e-87 325.1 385 48.8
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 9.9e-86 321.6 298 58.1
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 1.1e-84 318.2 334 51.2
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 9.6e-81 305.1 383 47.8
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 1.1e-79 301.6 240 63.3
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 1.5e-78 297.7 443 39.7
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 2.6e-78 297.0 159 93.7
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.8e-77 293.1 312 51.9
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 1.3e-74 284.6 229 61.6
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 2.0e-70 270.8 534 37.6
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 4.4e-70 269.6 312 52.9
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 4.8e-64 249.6 161 83.2
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 7.6e-62 242.3 294 47.6
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.3e-58 231.5 169 65.7
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.5e-57 227.3 308 43.5
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 5.8e-46 189.5 354 41.2
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 4.2e-44 183.3 162 66.0
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 4.3e-41 173.3 213 49.3
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 1.1e-39 168.7 544 30.1
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 1.7e-37 161.4 178 52.2
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 7.9e-35 152.5 566 28.4
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 2.3e-34 151.0 103 68.0
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 1.8e-31 141.4 380 31.8
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.1e-27 127.9 166 45.2
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 1.3e-21 108.6 125 44.8
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 6.5e-21 106.3 127 47.2
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.5e-20 105.1 68 75.0
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 7.2e-20 102.8 118 49.2
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 3.7e-16 90.5 141 41.1
PGSC0003DMG400017506 Solanum tuberosum HOM05D004949 ORTHO05D006006 1.4e-15 88.6 53 88.7
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 1.6e-14 85.1 84 54.8
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 3.8e-13 80.5 81 50.6
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.5e-13 79.7 75 54.7
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.5e-13 79.7 75 54.7
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.5e-12 78.6 75 53.3
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.5e-12 76.6 75 54.7
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 7.2e-12 76.3 110 43.6
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 1.0e-10 72.4 62 54.8
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 1.4e-10 72.0 110 42.7
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 5.9e-06 56.6 45 62.2


User provided reference genes

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