Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 8.1e-107 390.6 219 100.0
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 6.0e-70 268.1 213 79.8
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 9.0e-66 254.2 201 80.6
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 3.4e-65 252.3 200 80.5
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 3.4e-65 252.3 200 79.5
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.7e-64 250.0 213 76.5
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 3.2e-63 245.7 202 76.7
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 5.5e-63 245.0 202 72.3
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 9.3e-63 244.2 204 71.6
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 7.9e-62 241.1 207 63.8
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 1.8e-61 240.0 200 72.0
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 5.1e-61 238.4 203 69.5
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 8.7e-61 237.7 209 60.8
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 1.5e-60 236.9 199 63.3
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 2.5e-60 236.1 174 84.5
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 2.5e-60 236.1 202 62.4
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 3.3e-60 235.7 201 69.2
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.3e-60 235.7 202 62.4
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.3e-60 235.7 202 62.4
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 3.3e-60 235.7 201 66.7
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 4.3e-60 235.3 209 70.3
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 4.3e-60 235.3 209 65.6
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 4.3e-60 235.3 200 64.5
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 9.6e-60 234.2 207 61.8
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 1.3e-59 233.8 201 68.2
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 1.3e-59 233.8 201 62.7
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 1.6e-59 233.4 201 65.7
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 1.6e-59 233.4 217 66.4
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 2.1e-59 233.0 205 64.9
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 3.7e-59 232.3 201 67.7
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 3.7e-59 232.3 206 63.1
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 3.7e-59 232.3 205 62.4
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 8.2e-59 231.1 206 67.0
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 1.4e-58 230.3 206 62.6
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 1.8e-58 229.9 201 60.2
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 1.8e-58 229.9 201 61.7
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 4.1e-58 228.8 199 60.8
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 4.1e-58 228.8 201 67.7
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 6.9e-58 228.0 200 72.0
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 6.9e-58 228.0 202 61.4
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 6.9e-58 228.0 202 66.3
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 1.2e-57 227.3 205 62.0
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 1.2e-57 227.3 205 67.8
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 1.5e-57 226.9 199 60.8
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 1.5e-57 226.9 199 70.4
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 1.5e-57 226.9 201 63.7
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 2.0e-57 226.5 201 69.7
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 2.6e-57 226.1 205 61.5
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 2.6e-57 226.1 199 60.3
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 3.4e-57 225.7 201 59.7
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 5.9e-57 224.9 201 61.7
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 5.9e-57 224.9 203 59.1
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 1.3e-56 223.8 205 63.4
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 1.3e-56 223.8 203 59.1
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 1.7e-56 223.4 202 63.9
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 2.2e-56 223.0 203 62.1
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 2.2e-56 223.0 210 56.7
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 2.2e-56 223.0 203 70.9
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 2.9e-56 222.6 200 72.5
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 3.8e-56 222.2 198 62.6
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 6.5e-56 221.5 202 67.3
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 8.5e-56 221.1 207 68.6
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 1.1e-55 220.7 199 61.3
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 1.1e-55 220.7 204 70.1
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 1.9e-55 219.9 204 58.8
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 4.2e-55 218.8 204 59.8
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 5.5e-55 218.4 209 62.7
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 5.5e-55 218.4 209 62.7
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 7.2e-55 218.0 204 60.8
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 9.3e-55 217.6 205 68.8
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 1.2e-54 217.2 203 62.6
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 1.6e-54 216.9 204 66.2
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 1.6e-54 216.9 201 71.1
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 2.1e-54 216.5 201 69.2
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 2.7e-54 216.1 182 73.6
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 3.6e-54 215.7 209 67.9
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 6.1e-54 214.9 205 63.4
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 1.0e-53 214.2 204 59.8
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 1.8e-53 213.4 209 66.5
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 1.8e-53 213.4 209 66.5
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 3.0e-53 212.6 214 57.5
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 3.9e-53 212.2 209 67.5
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 5.1e-53 211.8 201 57.2
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 5.1e-53 211.8 204 68.6
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 5.1e-53 211.8 204 66.2
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 1.9e-52 209.9 209 65.1
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 2.5e-52 209.5 201 62.2
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 4.3e-52 208.8 204 62.3
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 7.4e-52 208.0 201 70.1
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 1.3e-51 207.2 207 68.1
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 1.6e-51 206.8 199 62.3
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 2.2e-51 206.5 201 68.2
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 4.8e-51 205.3 204 63.2
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 6.3e-51 204.9 201 69.2
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 1.1e-50 204.1 215 57.7
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 1.1e-50 204.1 205 65.4
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 1.4e-50 203.8 203 66.5
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 1.2e-49 200.7 208 65.4
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 4.5e-49 198.7 157 68.8
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 2.9e-48 196.1 139 71.2
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.9e-48 196.1 139 71.2
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 6.5e-48 194.9 201 56.2
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 8.5e-48 194.5 201 54.7
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.2e-47 192.6 139 70.5
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 2.7e-46 189.5 203 62.6
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 2.7e-46 189.5 139 68.3
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 3.6e-46 189.1 144 63.2
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 3.6e-46 189.1 140 67.1
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 4.6e-46 188.7 139 69.1
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 2.3e-45 186.4 200 53.0
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 2.4e-42 176.4 201 57.7
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 5.3e-42 175.3 205 52.7
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 9.1e-42 174.5 133 66.2
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 5.9e-41 171.8 133 64.7
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 3.8e-40 169.1 195 62.6
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 9.4e-39 164.5 153 56.9
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.0e-37 161.0 106 75.5
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 1.4e-37 160.6 107 74.8
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 1.4e-37 160.6 106 74.5
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 3.9e-37 159.1 132 81.1
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 1.8e-29 133.7 98 67.3
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 3.5e-25 119.4 121 64.5
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 2.5e-23 113.2 59 86.4
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 1.2e-22 110.9 122 50.8
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 1.5e-20 104.0 116 45.7
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 4.8e-19 99.0 208 48.6
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 1.2e-17 94.4 110 44.5
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 8.5e-16 88.2 121 39.7
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 8.8e-13 78.2 100 45.0
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 1.2e-09 67.8 87 74.7
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.7e-08 63.9 46 65.2
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 1.7e-08 63.9 105 38.1
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 3.3e-07 59.7 127 31.5
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 2.1e-06 57.0 39 74.4


User provided reference genes

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