Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 1.9e-71 272.3 128 100.0
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 1.0e-69 266.5 128 96.9
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 1.0e-69 266.5 128 96.9
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 1.7e-69 265.8 128 95.3
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 4.3e-68 261.2 127 94.5
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 4.3e-68 261.2 127 94.5
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 2.4e-66 255.4 126 93.7
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 3.1e-66 255.0 126 93.7
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 3.1e-66 255.0 126 92.9
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 6.9e-66 253.8 126 92.9
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 6.9e-66 253.8 126 92.9
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 9.0e-66 253.4 126 92.1
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 1.2e-65 253.1 126 92.1
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.2e-65 253.1 126 92.1
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 1.2e-65 253.1 126 92.1
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 1.5e-65 252.7 126 92.1
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 2.0e-65 252.3 126 92.9
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.0e-65 252.3 126 91.3
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 2.0e-65 252.3 126 92.9
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 2.6e-65 251.9 126 91.3
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 3.4e-65 251.5 126 92.1
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 3.4e-65 251.5 126 91.3
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 3.4e-65 251.5 126 92.1
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 3.4e-65 251.5 126 91.3
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 3.4e-65 251.5 126 91.3
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.4e-65 251.5 126 91.3
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 3.4e-65 251.5 126 91.3
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 3.4e-65 251.5 126 92.9
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 4.5e-65 251.1 126 92.1
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 4.5e-65 251.1 126 91.3
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 4.5e-65 251.1 126 91.3
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 4.5e-65 251.1 126 91.3
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 4.5e-65 251.1 126 91.3
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 5.8e-65 250.8 126 92.1
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 5.8e-65 250.8 126 92.1
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 7.6e-65 250.4 126 92.1
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 9.9e-65 250.0 126 91.3
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 9.9e-65 250.0 126 90.5
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 9.9e-65 250.0 126 90.5
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 9.9e-65 250.0 126 90.5
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 9.9e-65 250.0 126 90.5
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 9.9e-65 250.0 126 90.5
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 9.9e-65 250.0 126 92.1
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 9.9e-65 250.0 126 92.1
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 9.9e-65 250.0 126 91.3
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 1.3e-64 249.6 126 90.5
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 1.3e-64 249.6 126 90.5
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 1.3e-64 249.6 126 89.7
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 1.7e-64 249.2 126 91.3
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 2.2e-64 248.8 124 91.9
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 2.2e-64 248.8 124 91.9
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 2.2e-64 248.8 126 89.7
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 2.9e-64 248.4 127 88.2
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.9e-64 248.4 126 90.5
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 4.9e-64 247.7 126 88.9
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 8.4e-64 246.9 124 91.1
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 8.4e-64 246.9 126 91.3
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 8.4e-64 246.9 126 88.1
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.1e-63 246.5 126 88.1
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 1.1e-63 246.5 126 88.1
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 1.4e-63 246.1 128 88.3
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 1.4e-63 246.1 126 89.7
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 1.9e-63 245.7 124 89.5
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.9e-63 245.7 126 88.1
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 2.4e-63 245.4 126 88.9
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 2.4e-63 245.4 126 88.1
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 3.2e-63 245.0 125 89.6
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.2e-63 245.0 125 89.6
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.2e-63 245.0 125 89.6
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 3.2e-63 245.0 126 88.9
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 3.2e-63 245.0 126 88.9
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 3.2e-63 245.0 126 88.1
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 3.2e-63 245.0 126 88.9
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 4.2e-63 244.6 126 88.9
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 5.4e-63 244.2 126 88.1
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 5.4e-63 244.2 126 88.1
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 9.3e-63 243.4 125 88.8
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 1.6e-62 242.7 126 88.1
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.1e-62 242.3 124 87.9
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 2.1e-62 242.3 124 87.9
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 2.7e-62 241.9 128 89.1
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 3.5e-62 241.5 124 87.9
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 3.5e-62 241.5 128 85.9
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 3.5e-62 241.5 126 88.1
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 4.6e-62 241.1 126 86.5
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 7.9e-62 240.4 126 87.3
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 7.9e-62 240.4 126 85.7
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 7.9e-62 240.4 126 85.7
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 1.0e-61 240.0 126 86.5
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 1.0e-61 240.0 126 86.5
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 3.0e-61 238.4 124 89.5
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 3.0e-61 238.4 124 89.5
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 3.0e-61 238.4 124 89.5
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 5.1e-61 237.7 126 84.9
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 6.7e-61 237.3 126 85.7
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 6.7e-61 237.3 126 85.7
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 6.7e-61 237.3 126 83.3
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 1.9e-60 235.7 124 87.9
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 1.9e-60 235.7 124 87.9
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 3.3e-60 235.0 124 87.9
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 4.3e-60 234.6 124 87.9
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 4.3e-60 234.6 124 87.9
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 4.3e-60 234.6 124 87.9
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 4.3e-60 234.6 124 87.9
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 4.3e-60 234.6 124 87.9
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 4.3e-60 234.6 124 86.3
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 4.3e-60 234.6 125 84.0
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 4.3e-60 234.6 126 82.5
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 5.6e-60 234.2 151 76.2
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 7.4e-60 233.8 124 84.7
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 9.6e-60 233.4 124 87.9
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 2.1e-59 232.3 123 87.8
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 4.8e-59 231.1 118 91.5
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 4.8e-59 231.1 118 91.5
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 4.8e-59 231.1 118 91.5
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 6.2e-59 230.7 118 90.7
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 8.1e-59 230.3 124 86.3
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 1.1e-58 229.9 124 86.3
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 2.4e-58 228.8 157 72.0
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 5.3e-58 227.6 112 90.2
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 2.0e-57 225.7 171 65.5
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 2.0e-57 225.7 133 82.0
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 7.6e-57 223.8 124 82.3
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 1.3e-56 223.0 126 80.2
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 1.7e-56 222.6 112 92.0
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 1.7e-56 222.6 134 79.1
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 2.2e-56 222.2 120 84.2
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 2.9e-56 221.9 124 84.7
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 3.8e-56 221.5 126 78.6
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 1.3e-53 213.0 114 86.0
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 1.3e-53 213.0 121 77.7
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.8e-53 212.6 109 88.1
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 2.3e-53 212.2 114 84.2
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 3.9e-53 211.5 126 73.8
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 2.1e-51 205.7 108 88.0
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.3e-48 196.4 149 66.4
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 1.3e-43 179.9 100 86.0
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 3.7e-43 178.3 111 74.8
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 4.8e-43 177.9 124 71.0
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 5.3e-42 174.5 87 90.8
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 2.0e-41 172.6 85 91.8
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 3.4e-41 171.8 82 95.1
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 3.4e-41 171.8 82 96.3
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 2.2e-40 169.1 82 95.1
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 8.5e-40 167.2 82 92.7
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 1.4e-39 166.4 118 69.5
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 1.9e-39 166.0 83 92.8
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 3.6e-38 161.8 82 87.8
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 6.1e-38 161.0 76 96.1
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 2.3e-37 159.1 126 62.7
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.0e-36 156.0 177 49.2
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 3.3e-36 155.2 110 70.0
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 4.3e-36 154.8 78 89.7
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 5.3e-34 147.9 78 87.2
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 1.2e-33 146.7 129 58.9
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 2.0e-33 146.0 78 87.2
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 3.4e-33 145.2 118 61.0
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 2.5e-31 139.0 64 100.0
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 4.7e-30 134.8 73 83.6
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 1.0e-29 133.7 102 65.7
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 3.5e-25 118.6 58 91.4
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 7.7e-25 117.5 107 56.1
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 7.7e-25 117.5 107 56.1
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 2.5e-23 112.5 58 89.7
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 4.0e-21 105.1 57 86.0
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 5.5e-15 84.7 44 86.4


User provided reference genes

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