Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 3.6e-221 771.2 361 100.0
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 4.2e-201 704.5 361 90.6
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 7.8e-200 700.3 361 90.3
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 8.7e-199 696.8 361 90.0
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 1.6e-152 543.1 358 69.0
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 2.1e-152 542.7 358 69.3
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 4.4e-150 535.0 357 67.2
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 4.4e-150 535.0 362 68.2
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 1.3e-149 533.5 343 69.4
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 4.8e-149 531.6 360 67.8
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 8.2e-149 530.8 360 68.1
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.8e-148 529.6 360 67.8
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 5.3e-148 528.1 358 65.9
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 7.0e-148 527.7 355 67.6
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 7.0e-148 527.7 355 67.6
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 1.2e-147 526.9 351 67.0
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 5.9e-147 524.6 357 65.3
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 1.0e-146 523.9 342 68.1
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 1.3e-146 523.5 343 69.4
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 5.0e-146 521.5 356 66.9
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 8.5e-146 520.8 355 66.5
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 8.5e-146 520.8 341 67.7
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 8.5e-146 520.8 345 68.7
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 1.1e-145 520.4 352 65.9
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 2.5e-145 519.2 358 66.5
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 5.5e-145 518.1 354 66.9
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 1.2e-144 516.9 343 67.3
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 1.6e-144 516.5 357 66.1
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 1.6e-144 516.5 360 64.4
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 2.1e-144 516.2 355 65.4
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 2.7e-144 515.8 343 66.2
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 6.1e-144 514.6 362 64.4
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 1.4e-143 513.5 358 66.5
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 4.0e-143 511.9 360 64.4
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 8.8e-143 510.8 356 65.7
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 2.6e-142 509.2 358 65.1
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 5.7e-142 508.1 347 66.6
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 7.5e-142 507.7 344 65.1
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 3.7e-141 505.4 355 64.5
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 3.7e-141 505.4 358 62.6
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 6.3e-141 504.6 369 61.8
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 8.2e-141 504.2 338 67.2
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 8.2e-141 504.2 358 62.6
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 1.1e-140 503.8 358 63.1
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 1.4e-140 503.4 345 66.7
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 1.8e-140 503.1 363 64.2
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 2.4e-140 502.7 358 62.0
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 3.1e-140 502.3 343 64.7
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 3.1e-140 502.3 361 62.6
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 3.1e-140 502.3 337 66.8
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 5.3e-140 501.5 359 63.0
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 1.6e-139 500.0 358 62.0
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 2.0e-139 499.6 361 62.6
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 2.7e-139 499.2 354 63.8
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 5.9e-139 498.0 358 65.1
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 5.9e-139 498.0 361 62.6
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 1.0e-138 497.3 339 67.6
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 5.0e-138 495.0 373 63.0
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 1.1e-137 493.8 342 64.9
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 1.5e-137 493.4 325 69.5
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 1.9e-137 493.0 351 63.5
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 2.5e-137 492.7 325 69.2
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 5.5e-137 491.5 357 63.0
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 7.2e-137 491.1 344 65.4
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 1.2e-136 490.3 318 69.8
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 3.6e-136 488.8 391 59.6
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 8.0e-136 487.6 358 64.2
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 4.0e-135 485.3 354 61.3
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 1.2e-134 483.8 350 65.4
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 1.2e-134 483.8 352 61.1
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 4.4e-134 481.9 356 60.4
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 5.7e-134 481.5 352 60.5
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 1.4e-132 476.9 310 70.0
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 1.8e-132 476.5 355 61.1
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 1.8e-132 476.5 354 60.5
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 2.4e-132 476.1 362 60.8
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 2.4e-132 476.1 354 59.9
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 2.4e-132 476.1 341 62.8
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 4.1e-132 475.3 354 60.5
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 4.1e-132 475.3 354 60.5
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 5.4e-132 474.9 354 59.9
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 5.4e-132 474.9 354 60.2
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 5.4e-132 474.9 354 60.2
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 1.2e-131 473.8 354 58.5
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 5.9e-131 471.5 349 63.6
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.3e-130 470.3 360 58.6
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 1.7e-130 469.9 350 60.0
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 2.9e-130 469.2 340 61.2
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 3.8e-130 468.8 447 49.2
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 5.0e-130 468.4 352 59.1
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 8.5e-130 467.6 352 60.8
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 8.5e-130 467.6 340 61.2
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 1.1e-129 467.2 357 58.3
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 1.9e-129 466.5 357 58.5
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 7.2e-129 464.5 356 58.1
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.2e-128 463.8 340 60.6
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 5.2e-127 458.4 339 61.9
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 5.2e-127 458.4 302 67.2
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 6.8e-127 458.0 351 60.4
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 9.8e-126 454.1 326 62.9
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 1.3e-125 453.8 446 48.4
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 9.2e-124 447.6 230 90.0
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 6.6e-122 441.4 344 62.5
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 1.9e-121 439.9 364 60.2
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.9e-121 439.9 332 67.8
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 3.3e-121 439.1 344 61.6
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 3.6e-120 435.6 354 60.5
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 1.5e-118 430.3 339 57.8
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 1.5e-118 430.3 275 70.9
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 3.4e-118 429.1 275 70.5
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 2.2e-117 426.4 355 56.9
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 2.9e-117 426.0 275 70.2
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 1.1e-116 424.1 314 61.5
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 5.8e-110 401.7 341 56.0
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 1.3e-106 390.6 348 53.4
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 9.5e-105 384.4 265 65.3
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 3.1e-103 379.4 247 68.4
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 6.8e-103 378.3 262 63.7
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 9.5e-97 357.8 322 55.6
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 9.2e-92 341.3 219 68.5
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 8.6e-90 334.7 288 51.4
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.6e-88 330.5 245 62.4
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 2.8e-88 329.7 365 45.2
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 4.4e-86 322.4 360 43.9
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 4.2e-84 315.8 324 46.9
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 5.4e-84 315.5 331 45.3
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.9e-81 307.0 203 67.0
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 2.1e-80 303.5 273 53.8
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 1.1e-76 291.2 304 46.1
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 2.4e-76 290.0 213 61.0
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 9.3e-76 288.1 194 67.0
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 3.3e-73 279.6 244 61.1
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 9.0e-71 271.6 210 58.6
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.2e-69 266.9 204 60.3
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 5.1e-66 255.8 190 64.2
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 2.1e-64 250.4 179 63.7
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 2.4e-55 220.3 160 61.9
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 4.1e-55 219.5 155 64.5
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 2.6e-54 216.9 143 69.9
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 3.1e-39 166.8 241 39.8
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 7.4e-33 145.6 99 65.7
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 1.6e-27 127.9 103 54.4
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 5.7e-25 119.4 106 53.8
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 2.2e-24 117.5 98 52.0
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 2.0e-22 110.9 102 50.0
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 2.2e-08 64.3 139 26.6


User provided reference genes

Program Settings