Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 5.8e-301 1036.9 594 100.0
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 2.1e-189 666.4 631 63.4
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 1.3e-186 657.1 616 63.3
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 9.0e-185 651.0 585 69.9
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 3.4e-184 649.0 596 66.6
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 2.1e-170 603.2 615 60.7
Sopen04g022690 Solanum pennellii HOM05D007504 ORTHO05D007629 5.0e-159 565.5 544 63.4
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 6.7e-55 219.5 652 32.7
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 1.2e-43 182.2 617 32.6
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 7.2e-41 172.9 613 30.7
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 2.1e-40 171.4 587 31.0
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 4.1e-36 157.1 623 28.3
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 1.2e-35 155.6 580 30.3
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 2.6e-35 154.5 592 31.4
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 3.8e-34 150.6 606 30.0
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 1.1e-33 149.1 583 29.8
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 2.1e-32 144.8 619 31.5
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 1.0e-31 142.5 580 28.3
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 1.0e-31 142.5 570 28.9
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 3.9e-31 140.6 580 29.3
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 2.0e-30 138.3 606 28.9
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 3.3e-30 137.5 605 27.3
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 3.3e-30 137.5 607 28.8
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 4.4e-30 137.1 572 30.2
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 2.2e-29 134.8 605 27.6
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 2.4e-28 131.3 566 28.8
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 3.1e-28 131.0 574 27.0
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 4.1e-28 130.6 602 27.9
QL01p050434 Quercus lobata HOM05D007504 ORTHO05D007629 5.3e-28 130.2 237 42.2
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 4.5e-27 127.1 606 26.9
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 4.5e-27 127.1 624 28.5
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 5.5e-25 120.2 611 29.6
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 7.2e-25 119.8 582 30.9
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 1.2e-24 119.0 789 25.1
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 2.7e-24 117.9 606 25.7
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 1.4e-23 115.5 613 26.8
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 9.7e-22 109.4 576 27.1
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 2.8e-21 107.8 674 25.4
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 8.2e-21 106.3 683 23.7
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 4.1e-20 104.0 69 71.0
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 5.3e-20 103.6 628 26.4
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 1.6e-19 102.1 653 29.2
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 2.6e-19 101.3 676 24.1
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 2.6e-19 101.3 367 30.8
CSS0043883 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 3.5e-19 100.9 296 34.8
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 4.5e-19 100.5 587 25.7
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 7.7e-19 99.8 327 31.8
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 2.2e-18 98.2 175 42.3
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 2.9e-18 97.8 125 44.8
Prupe.6G358500 Prunus persica HOM05D007504 ORTHO05D007629 2.9e-18 97.8 342 32.7
Sc09g0001620 Simmondsia chinensis HOM05D007504 ORTHO05D007629 5.0e-18 97.1 362 31.5
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 1.1e-17 95.9 242 35.5
TAR636G2263 Trochodendron aralioides HOM05D007504 ORTHO05D007629 1.5e-17 95.5 165 41.2
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 1.9e-17 95.1 125 43.2
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 1.9e-17 95.1 69 68.1
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 3.2e-17 94.4 574 24.7
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 5.5e-17 93.6 196 35.2
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 1.2e-16 92.4 598 24.4
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 3.6e-16 90.9 679 23.4
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 4.7e-16 90.5 735 24.5
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 8.0e-16 89.7 70 58.6
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 1.0e-15 89.4 72 65.3
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 1.4e-15 89.0 68 61.8
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 2.3e-15 88.2 175 34.3
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 3.0e-15 87.8 148 38.5
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 6.7e-15 86.7 581 26.3
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 6.7e-15 86.7 739 26.1
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 1.5e-14 85.5 704 24.6
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 4.4e-14 84.0 243 31.3
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 7.5e-14 83.2 73 52.1
HanXRQChr05g0156881 Helianthus annuus HOM05D007504 ORTHO05D007629 7.5e-14 83.2 303 29.4
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 2.2e-13 81.6 190 33.7
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 2.2e-13 81.6 627 23.6
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 4.8e-13 80.5 97 44.3
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 8.2e-13 79.7 71 49.3
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 8.2e-13 79.7 155 34.8
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 8.2e-13 79.7 633 23.4
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 1.4e-12 79.0 150 34.7
SHI33673 Sapria himalayana HOM05D007504 ORTHO05D000001 1.8e-12 78.6 143 35.7
ATR0609G018 Amborella trichopoda HOM05D007504 ORTHO05D007629 2.4e-12 78.2 206 35.4
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 3.1e-12 77.8 131 37.4
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 4.1e-12 77.4 615 22.9
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 5.3e-12 77.0 610 23.0
SEGI_35581 Sequoiadendron giganteum HOM05D007504 ORTHO05D007629 5.3e-12 77.0 66 53.0
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 7.0e-12 76.6 73 49.3
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 9.1e-12 76.3 71 52.1
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 9.1e-12 76.3 169 32.0
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 2.0e-11 75.1 71 54.9
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 3.5e-11 74.3 132 39.4
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 5.9e-11 73.6 140 34.3
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 7.7e-11 73.2 71 53.5
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 7.7e-11 73.2 566 24.6
Cpa.g.sc123.15 Carica papaya HOM05D007504 ORTHO05D007629 1.0e-10 72.8 67 50.7
Phvul.010G077946 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 2.2e-10 71.6 68 51.5
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 2.9e-10 71.2 115 37.4
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 3.8e-10 70.9 93 38.7
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 3.8e-10 70.9 74 48.6
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 3.8e-10 70.9 205 35.6
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 1.5e-09 68.9 77 46.8
Sp5g19730 Schrenkiella parvula HOM05D009566 ORTHO05D007629 1.5e-09 68.9 230 31.3
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 1.9e-09 68.6 94 38.3
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 5.5e-09 67.0 216 33.8
THA.LOC104821804 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 5.5e-09 67.0 252 32.5
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 9.4e-09 66.2 183 29.5
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 1.2e-08 65.9 218 33.9
CARHR056580 Cardamine hirsuta HOM05D009566 ORTHO05D007629 1.6e-08 65.5 207 31.4
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 2.7e-08 64.7 125 34.4
Phvul.010G077868 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 2.7e-08 64.7 289 23.9
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 2.7e-08 64.7 305 26.9
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 4.7e-08 63.9 116 35.3
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 1.0e-07 62.8 76 43.4
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 1.0e-07 62.8 76 43.4
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 1.0e-07 62.8 76 43.4
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 1.0e-07 62.8 76 43.4
Haze_03334 Corylus avellana HOM05D007504 ORTHO05D007629 1.0e-07 62.8 83 48.2
HPP92_020229 Vanilla planifolia HOM05D007504 ORTHO05D007629 1.4e-07 62.4 61 45.9
Os12g0506700 Oryza sativa ssp. japonica HOM05D007504 ORTHO05D007629 1.8e-07 62.0 71 42.3
AL7G45070 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 3.0e-07 61.2 95 35.8
Nn1g08319 Nelumbo nucifera HOM05D007504 ORTHO05D007629 8.8e-07 59.7 50 56.0
Carub.0002s1043 Capsella rubella HOM05D009566 ORTHO05D007629 5.7e-06 57.0 246 27.2
Glyma.10G170100 Glycine max HOM05D007504 ORTHO05D007629 5.7e-06 57.0 44 59.1
HPP92_009958 Vanilla planifolia HOM05D007504 ORTHO05D007629 7.5e-06 56.6 562 22.8


User provided reference genes

Program Settings