Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 2.2e-224 781.9 383 100.0
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 4.9e-184 647.9 339 92.3
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 8.3e-184 647.1 339 92.3
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 3.5e-182 641.7 339 92.0
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.3e-181 639.8 339 91.7
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 5.2e-178 627.9 339 88.5
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 6.3e-139 498.0 340 69.7
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 8.5e-136 487.6 347 66.0
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 1.6e-134 483.4 339 68.4
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 1.5e-132 476.9 343 66.2
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 6.3e-131 471.5 339 66.1
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 8.2e-131 471.1 322 69.9
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 3.1e-130 469.2 345 65.8
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 5.3e-130 468.4 360 63.9
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 9.1e-130 467.6 346 64.7
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.2e-129 467.2 363 63.1
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 1.0e-128 464.2 354 63.8
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 2.2e-128 463.0 337 66.2
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.5e-127 459.5 342 63.7
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 3.2e-127 459.1 335 64.8
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 5.5e-127 458.4 340 63.8
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 7.2e-127 458.0 355 63.4
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 7.2e-127 458.0 342 63.5
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 3.6e-126 455.7 346 64.5
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 6.1e-126 454.9 344 65.4
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 6.1e-126 454.9 344 65.4
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 7.9e-126 454.5 345 64.3
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 7.9e-126 454.5 340 62.9
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 1.4e-125 453.8 276 77.5
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.4e-125 453.8 346 65.0
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 1.4e-125 453.8 337 65.0
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 1.8e-125 453.4 363 61.4
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 3.0e-125 452.6 331 67.1
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 6.7e-125 451.4 342 61.4
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 1.5e-124 450.3 344 62.8
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 2.6e-124 449.5 346 64.2
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 5.7e-124 448.4 341 61.9
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 1.3e-123 447.2 344 62.2
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 2.2e-123 446.4 354 61.6
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 2.2e-123 446.4 344 61.9
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 1.4e-122 443.7 337 63.2
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 4.1e-122 442.2 344 61.0
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 7.0e-122 441.4 337 62.6
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 7.0e-122 441.4 334 62.9
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 1.6e-121 440.3 339 62.2
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 2.6e-121 439.5 355 60.3
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 4.5e-121 438.7 221 94.6
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 7.7e-121 438.0 341 61.3
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 1.7e-120 436.8 344 61.3
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 3.8e-120 435.6 341 60.7
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 2.5e-119 433.0 359 60.4
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 7.2e-119 431.4 341 59.5
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 9.4e-119 431.0 393 56.7
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 1.2e-118 430.6 339 61.9
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 1.6e-118 430.3 342 59.1
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 4.7e-118 428.7 366 57.7
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 1.0e-117 427.6 340 62.6
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 1.0e-117 427.6 356 57.0
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 2.3e-117 426.4 345 62.3
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 5.2e-117 425.2 340 61.2
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 6.7e-117 424.9 347 60.8
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 4.4e-116 422.2 317 64.7
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 2.8e-115 419.5 340 58.2
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 4.8e-115 418.7 347 60.8
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 4.8e-115 418.7 357 58.8
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 8.2e-115 417.9 277 69.0
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 2.4e-114 416.4 386 55.2
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 4.1e-114 415.6 352 57.7
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 9.1e-114 414.5 363 57.3
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 1.6e-113 413.7 386 54.7
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 3.5e-113 412.5 278 68.0
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 5.9e-113 411.8 346 60.4
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 7.7e-113 411.4 333 60.1
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 7.7e-113 411.4 342 58.8
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 1.3e-112 410.6 325 59.4
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 2.2e-112 409.8 347 59.4
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 2.2e-112 409.8 346 59.5
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 2.9e-112 409.5 347 59.4
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 2.9e-112 409.5 341 59.2
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 2.9e-112 409.5 335 58.2
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 3.8e-112 409.1 346 59.5
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 5.0e-112 408.7 343 59.5
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 5.0e-112 408.7 341 57.2
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 6.5e-112 408.3 316 61.1
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 8.5e-112 407.9 332 59.6
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 1.5e-111 407.1 333 59.8
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 2.5e-111 406.4 323 61.3
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 3.2e-111 406.0 356 57.9
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 6.1e-110 401.7 357 56.3
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 1.8e-109 400.2 326 61.0
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 2.3e-109 399.8 293 61.8
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 2.3e-109 399.8 326 61.0
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.0e-108 396.7 376 53.5
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 9.8e-108 394.4 341 57.8
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 3.4e-100 369.4 338 54.4
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 3.7e-99 365.9 221 76.5
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 7.0e-98 361.7 221 76.5
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 6.6e-96 355.1 335 50.7
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 1.2e-94 350.9 236 69.9
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 1.4e-93 347.4 221 72.4
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 4.0e-93 345.9 227 69.2
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 4.0e-93 345.9 227 69.2
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 4.0e-93 345.9 221 73.3
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.3e-91 340.9 367 52.3
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 1.1e-90 337.8 310 51.9
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 7.8e-89 331.6 317 50.5
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 6.6e-88 328.6 344 48.3
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 1.1e-87 327.8 338 50.3
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 1.2e-86 324.3 321 50.2
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 1.2e-84 317.8 221 67.0
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 7.5e-84 315.1 245 59.2
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 1.5e-79 300.8 216 67.1
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 1.1e-77 294.7 213 65.7
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 2.2e-75 287.0 345 47.5
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.4e-74 284.3 279 49.8
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 1.1e-63 248.1 317 38.8
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 4.7e-62 242.7 181 63.5
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 1.5e-60 237.7 224 50.0
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 3.0e-56 223.4 329 38.3
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 1.3e-54 218.0 118 91.5
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 4.2e-50 203.0 132 70.5
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 6.0e-49 199.1 195 48.7
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 7.9e-49 198.7 175 54.9
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 3.5e-41 173.3 127 60.6
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.5e-36 157.9 220 40.5
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 6.0e-33 146.0 142 53.5
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 3.1e-29 133.7 119 57.1
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 2.1e-25 120.9 123 52.8
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 3.8e-19 100.1 97 52.6
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 3.6e-17 93.6 82 53.7
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 3.6e-17 93.6 116 45.7
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 9.7e-15 85.5 100 44.0
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 7.2e-10 69.3 68 45.6


User provided reference genes

Program Settings