Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G2895.2 Capsicum annuum HOM05D007701 ORTHO05D006440 1.4e-70 269.6 147 100.0
CAN.G426.28 Capsicum annuum HOM05D007701 ORTHO05D006440 1.7e-68 262.7 147 98.0
PGSC0003DMG400031864 Solanum tuberosum HOM05D007701 ORTHO05D006440 2.1e-50 202.6 148 80.4
Solyc09g074450.1 Solanum lycopersicum HOM05D007701 ORTHO05D006440 1.2e-45 186.8 147 76.2
Sopen09g029300 Solanum pennellii HOM05D007701 ORTHO05D006440 1.7e-44 183.0 147 74.8
Sopen11g019180 Solanum pennellii HOM05D000047 ORTHO05D000044 5.5e-35 151.4 103 83.5
Nitab4.5_0004150g0050 Nicotiana tabacum HOM05D007701 ORTHO05D006440 1.1e-30 137.1 141 66.0
Nitab4.5_0002093g0180 Nicotiana tabacum HOM05D000530 ORTHO05D000621 2.2e-28 129.4 141 63.8
Hma1.2p1_0209F.1_g089060 Hydrangea macrophylla HOM05D007701 ORTHO05D006440 8.6e-20 100.9 135 54.1
QL12p024168 Quercus lobata HOM05D007701 ORTHO05D006440 4.7e-18 95.1 148 48.6
Haze_01050 Corylus avellana HOM05D007701 ORTHO05D006440 4.4e-16 88.6 126 51.6
Cfa015502 Carpinus fangiana HOM05D007701 ORTHO05D006440 7.5e-16 87.8 117 53.8
Ciclev10022800m.g Citrus clementina HOM05D007701 ORTHO05D006440 3.7e-15 85.5 89 59.6
CiPaw.07G100300 Carya illinoinensis HOM05D007701 ORTHO05D006440 4.9e-15 85.1 125 48.8
Medtr1g088970 Medicago truncatula HOM05D007701 ORTHO05D006440 1.1e-14 84.0 89 56.2
Prupe.8G252700 Prunus persica HOM05D007701 ORTHO05D006440 1.1e-14 84.0 126 53.2
Ca_10375_v3 Cicer arietinum L. HOM05D007701 ORTHO05D006440 1.4e-14 83.6 133 45.9
Potri.002G207500 Populus trichocarpa HOM05D007701 ORTHO05D006440 2.4e-14 82.8 135 49.6
Potri.014G135100 Populus trichocarpa HOM05D007701 ORTHO05D006440 1.2e-13 80.5 145 49.0
Gohir.D11G122900 Gossypium hirsutum HOM05D007701 ORTHO05D006440 2.3e-12 76.3 145 45.5
Gorai.007G131800 Gossypium raimondii HOM05D007701 ORTHO05D006440 2.3e-12 76.3 145 45.5
CANSAT25G3325 Cannabis sativa HOM05D007701 ORTHO05D006440 2.9e-12 75.9 108 50.9
Gohir.A11G118000 Gossypium hirsutum HOM05D007701 ORTHO05D006440 2.9e-12 75.9 145 46.2
Dinv44434 Davidia involucrata HOM05D007701 ORTHO05D006440 3.8e-12 75.5 111 54.1
Migut.D00227 Erythranthe guttata HOM05D007701 ORTHO05D006440 3.8e-12 75.5 109 51.4
Duzib138G0471 Durio zibethinus HOM05D007701 ORTHO05D006440 1.9e-11 73.2 143 46.2
Hma1.2p1_0078F.1_g040840 Hydrangea macrophylla HOM05D007701 ORTHO05D006440 2.5e-11 72.8 124 48.4
Manes.05G068100 Manihot esculenta HOM05D007701 ORTHO05D006440 7.3e-11 71.2 138 42.8
CiPaw.08G100300 Carya illinoinensis HOM05D007701 ORTHO05D006440 1.2e-10 70.5 128 43.8
Phvul.006G160600 Phaseolus vulgaris HOM05D007701 ORTHO05D006440 2.1e-10 69.7 107 50.5
AL39U10120 Arabidopsis lyrata HOM05D011411 ORTHO05D006440 2.8e-10 69.3 123 48.8
AL4G47520 Arabidopsis lyrata HOM05D011411 ORTHO05D006440 2.8e-10 69.3 123 48.8
Carub.0004s3065 Capsella rubella HOM05D011411 ORTHO05D006440 2.8e-10 69.3 123 48.0
SGA_v2.0_scaffold11G05758 Striga asiatica HOM05D007701 ORTHO05D006440 2.8e-10 69.3 102 50.0
Thecc.01G290700 Theobroma cacao HOM05D007701 ORTHO05D006440 6.1e-10 68.2 135 45.9
Medtr2g020370 Medicago truncatula HOM05D007701 ORTHO05D006440 1.0e-09 67.4 77 54.5
SalBow6G6224 Salvia bowleyana HOM05D007701 ORTHO05D006440 1.8e-09 66.6 114 45.6
Sc19g0004910 Simmondsia chinensis HOM05D007701 ORTHO05D006440 1.8e-09 66.6 89 52.8
Gohir.A08G072500 Gossypium hirsutum HOM05D007701 ORTHO05D006440 4.0e-09 65.5 141 44.0
Lalb_Chr02g0143101 Lupinus albus HOM05D007701 ORTHO05D006440 4.0e-09 65.5 134 41.0
AT2G47930 Arabidopsis thaliana HOM05D011411 ORTHO05D006440 1.2e-08 63.9 121 47.9
TPR.G1519 Trifolium pratense HOM05D007701 ORTHO05D006440 1.2e-08 63.9 121 39.7
Eucgr.K03437 Eucalyptus grandis HOM05D007701 ORTHO05D006440 1.5e-08 63.5 44 72.7
Thhalv10001715m.g Eutrema salsugineum HOM05D011411 ORTHO05D006440 1.5e-08 63.5 116 46.6
CARHR143320 Cardamine hirsuta HOM05D011411 ORTHO05D006440 2.6e-08 62.8 118 47.5
QL12p038321 Quercus lobata HOM05D007701 ORTHO05D006440 2.6e-08 62.8 124 45.2
Thecc.04G276200 Theobroma cacao HOM05D007701 ORTHO05D006440 2.6e-08 62.8 109 45.9
TPR.G16944 Trifolium pratense HOM05D007701 ORTHO05D006440 2.6e-08 62.8 152 40.1
Glyma.15G098700 Glycine max HOM05D007701 ORTHO05D006440 3.4e-08 62.4 89 53.9
TWI59G1240 Tripterygium wilfordii HOM05D007701 ORTHO05D006440 3.4e-08 62.4 90 50.0
Glyma.02G152500 Glycine max HOM05D007701 ORTHO05D006440 4.4e-08 62.0 134 39.6
Psat6g167920 Pisum sativum HOM05D007701 ORTHO05D006440 4.4e-08 62.0 80 53.8
Sp4g29850 Schrenkiella parvula HOM05D011411 ORTHO05D006440 5.8e-08 61.6 123 44.7
COL.COLO4_13938 Corchorus olitorius HOM05D007701 ORTHO05D006440 7.5e-08 61.2 119 42.0
Lalb_Chr06g0163321 Lupinus albus HOM05D007701 ORTHO05D006440 7.5e-08 61.2 137 39.4
Aa31LG1G29360 Aethionema arabicum HOM05D011411 ORTHO05D006440 9.8e-08 60.8 125 42.4
Dinv38332 Davidia involucrata HOM05D007701 ORTHO05D006440 1.3e-07 60.5 115 45.2
Duzib151G0788 Durio zibethinus HOM05D007701 ORTHO05D006440 1.7e-07 60.1 140 41.4
C04p00020 Brassica napus HOM05D011411 ORTHO05D006440 2.9e-07 59.3 109 48.6
Duzib133G0397 Durio zibethinus HOM05D007701 ORTHO05D006440 3.7e-07 58.9 76 55.3
Glyma.13G214500 Glycine max HOM05D007701 ORTHO05D006440 3.7e-07 58.9 148 41.2
Phvul.007G166400 Phaseolus vulgaris HOM05D007701 ORTHO05D006440 3.7e-07 58.9 133 40.6
Sabra10G0031300 Salix brachista HOM05D007701 ORTHO05D006440 6.4e-07 58.2 81 51.9
unitig_22.g5250 Utricularia gibba HOM05D037894 ORTHO05D051508 6.4e-07 58.2 102 46.1
Duzib212G0358 Durio zibethinus HOM05D007701 ORTHO05D006440 8.3e-07 57.8 115 43.5
Gohir.D08G080500 Gossypium hirsutum HOM05D007701 ORTHO05D006440 8.3e-07 57.8 141 41.8
Ca_00580_v3 Cicer arietinum L. HOM05D007701 ORTHO05D006440 1.1e-06 57.4 114 40.4
BcaC02g12535 Brassica carinata HOM05D011411 ORTHO05D006440 1.4e-06 57.0 109 47.7
BolC4t21649H Brassica oleracea HOM05D011411 ORTHO05D006440 1.4e-06 57.0 109 47.7
Manes.03G190500 Manihot esculenta HOM05D007701 ORTHO05D006440 1.4e-06 57.0 140 43.6
Gorai.004G085600 Gossypium raimondii HOM05D007701 ORTHO05D006440 1.9e-06 56.6 101 46.5
Phvul.001G202300 Phaseolus vulgaris HOM05D007701 ORTHO05D006440 1.9e-06 56.6 139 38.8
Glyma.10G021700 Glycine max HOM05D007701 ORTHO05D006440 2.4e-06 56.2 135 36.3
Lalb_Chr20g0118191 Lupinus albus HOM05D007701 ORTHO05D006440 2.4e-06 56.2 123 39.8
TWI09G0131 Tripterygium wilfordii HOM05D007701 ORTHO05D006440 3.2e-06 55.8 86 50.0
Lj5g0017437 Lotus japonicus HOM05D007701 ORTHO05D006440 5.4e-06 55.1 119 42.0
Oeu021618.1 Olea europaea HOM05D007701 ORTHO05D006440 5.4e-06 55.1 94 50.0
TWI14G1041 Tripterygium wilfordii HOM05D007701 ORTHO05D006440 5.4e-06 55.1 98 43.9
A05p00100 Brassica napus HOM05D011411 ORTHO05D006440 7.0e-06 54.7 109 47.7
BraA05t19006Z Brassica rapa HOM05D011411 ORTHO05D006440 7.0e-06 54.7 109 47.7
Lalb_Chr15g0087071 Lupinus albus HOM05D007701 ORTHO05D006440 9.2e-06 54.3 143 39.9


User provided reference genes

Program Settings