Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G2821.1 Capsicum annuum HOM05D022040 ORTHO05D003213 3.4e-94 348.2 163 100.0
CAN.G478.19 Capsicum annuum HOM05D022040 ORTHO05D003213 3.4e-94 348.2 163 100.0
CAN.G777.14 Capsicum annuum HOM05D022040 ORTHO05D003213 5.2e-34 148.3 122 61.5
Sopen10g026370 Solanum pennellii HOM05D000107 ORTHO05D003213 2.9e-21 105.9 121 44.6
CAN.G504.6 Capsicum annuum HOM05D000203 ORTHO05D000135 1.3e-16 90.5 68 64.7
EL10Ac1g02206 Beta vulgaris HOM05D000107 ORTHO05D000062 8.3e-16 87.8 117 41.9
EL10Ac9g22369 Beta vulgaris HOM05D000107 ORTHO05D000062 8.3e-16 87.8 117 41.9
AUR62022287 Chenopodium quinoa HOM05D000107 ORTHO05D003213 1.4e-15 87.0 115 41.7
COL.COLO4_24166 Corchorus olitorius HOM05D000107 ORTHO05D003213 3.9e-13 79.0 95 40.0
Solyc04g005730.3 Solanum lycopersicum HOM05D003888 ORTHO05D007163 1.6e-11 73.6 53 60.4
Sopen04g001780 Solanum pennellii HOM05D003888 ORTHO05D007163 1.6e-11 73.6 53 60.4
Rhsim01G0072500 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.1e-11 73.2 110 35.5
CAN.G89.9 Capsicum annuum HOM05D000107 ORTHO05D000062 4.7e-11 72.0 101 35.6
Solyc02g038810.1 Solanum lycopersicum HOM05D000002 ORTHO05D000062 1.1e-10 70.9 58 55.2
TAR344G0003 Trochodendron aralioides HOM05D000107 ORTHO05D000062 2.3e-10 69.7 97 35.1
Ah.10g024720 Amaranthus hybridus HOM05D000107 ORTHO05D000062 4.0e-10 68.9 118 33.9
Rhsim01G0104600 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.0e-10 68.9 118 29.7
Rhsim01G0164300 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.2e-10 68.6 118 29.7
Rhsim04G0033300 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.2e-10 68.6 118 29.7
TWI74G1678 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 5.2e-10 68.6 83 39.8
TWI79G1345 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 8.9e-10 67.8 82 39.0
TAR230G0001 Trochodendron aralioides HOM05D000107 ORTHO05D003213 8.9e-10 67.8 122 32.0
Lj1g0023380 Lotus japonicus HOM05D021492 ORTHO05D022867 2.0e-09 66.6 107 37.4
PSO832G1371 Papaver somniferum HOM05D000107 ORTHO05D000062 2.0e-09 66.6 112 31.2
PSO339G1683 Papaver somniferum HOM05D000107 ORTHO05D000062 4.4e-09 65.5 112 30.4
Rhsim09G0075900 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.4e-09 65.5 118 29.7
Rhsim04G0237300 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.8e-09 65.1 125 32.8
Rhsim05G0137300 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.8e-09 65.1 118 31.4
Rhsim09G0073600 Rhododendron simsii HOM05D000107 ORTHO05D000062 7.5e-09 64.7 120 32.5
PSO017G1209 Papaver somniferum HOM05D000107 ORTHO05D000062 9.8e-09 64.3 112 30.4
PSO832G1904 Papaver somniferum HOM05D000107 ORTHO05D000062 1.3e-08 63.9 112 30.4
RhsimUnG0068500 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.3e-08 63.9 119 30.3
AUR62035502 Chenopodium quinoa HOM05D000107 ORTHO05D000062 1.7e-08 63.5 102 28.4
Rhsim09G0134500 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.7e-08 63.5 118 28.8
PSO170G4890 Papaver somniferum HOM05D000107 ORTHO05D000062 2.2e-08 63.2 112 29.5
MBI11_g22671_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.9e-08 62.8 113 35.4
Rhsim01G0076100 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.9e-08 62.8 116 32.8
Ah.06g185260 Amaranthus hybridus HOM05D000107 ORTHO05D000062 3.7e-08 62.4 109 33.0
Ah.14g078660 Amaranthus hybridus HOM05D000107 ORTHO05D000568 4.9e-08 62.0 95 31.6
CSS0018002 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.9e-08 62.0 106 31.1
CSS0028705 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.9e-08 62.0 106 31.1
CSS0031171 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.9e-08 62.0 106 31.1
CSS0047073 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.9e-08 62.0 106 31.1
MBI17_g17142_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.9e-08 62.0 111 33.3
Rhsim09G0057000 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.9e-08 62.0 123 30.1
PGSC0003DMG400018891 Solanum tuberosum HOM05D000107 ORTHO05D003213 4.9e-08 62.0 111 28.8
EL10Ac2g03017 Beta vulgaris HOM05D000107 ORTHO05D000062 6.4e-08 61.6 121 33.9
EL10Ac6g14520 Beta vulgaris HOM05D007938 ORTHO05D009929 6.4e-08 61.6 121 33.9
Rhsim09G0047300 Rhododendron simsii HOM05D000107 ORTHO05D000062 6.4e-08 61.6 111 30.6
Rhsim09G0047500 Rhododendron simsii HOM05D000107 ORTHO05D000062 6.4e-08 61.6 111 30.6
RhsimUnG0181200 Rhododendron simsii HOM05D000107 ORTHO05D000062 6.4e-08 61.6 111 30.6
ECA246G0108 Erigeron canadensis HOM05D000107 ORTHO05D000062 8.3e-08 61.2 115 27.8
FvH4_3g30443 Fragaria vesca HOM05D000107 ORTHO05D000062 8.3e-08 61.2 115 34.8
PSO566G0345 Papaver somniferum HOM05D000107 ORTHO05D000062 8.3e-08 61.2 77 37.7
CSS0036122 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.1e-07 60.8 106 30.2
AUR62037410 Chenopodium quinoa HOM05D008455 ORTHO05D009597 1.1e-07 60.8 124 30.6
Rhsim06G0126900 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.1e-07 60.8 111 32.4
Aqoxy6G01994 Aquilegia oxysepala HOM05D000107 ORTHO05D000062 1.4e-07 60.5 114 28.9
Rhsim10G0126500 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.9e-07 60.1 111 32.4
Migut.K00946 Erythranthe guttata HOM05D000107 ORTHO05D003213 2.4e-07 59.7 109 33.0
Rhsim11G0005900 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.4e-07 59.7 111 31.5
Atru.chr3.1417 Acer truncatum HOM05D000107 ORTHO05D000062 3.2e-07 59.3 98 33.7
MBI06_g42454_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D003213 3.2e-07 59.3 113 31.0
EL10Ac8g19688 Beta vulgaris HOM05D000107 ORTHO05D003213 4.1e-07 58.9 102 32.4
CANSAT56G3353 Cannabis sativa HOM05D024511 ORTHO05D003213 4.1e-07 58.9 110 30.0
Rhsim07G0185300 Rhododendron simsii HOM05D000107 ORTHO05D003213 4.1e-07 58.9 123 30.1
Rhsim11G0023200 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.1e-07 58.9 119 31.1
Ah.03g145030 Amaranthus hybridus HOM05D000107 ORTHO05D000568 5.4e-07 58.5 100 31.0
Ah.08g220140 Amaranthus hybridus HOM05D000107 ORTHO05D003213 5.4e-07 58.5 117 29.1
Ah.14g079910 Amaranthus hybridus HOM05D000107 ORTHO05D003213 5.4e-07 58.5 107 32.7
ECA233G1813 Erigeron canadensis HOM05D000107 ORTHO05D000062 5.4e-07 58.5 111 27.9
QL01p002857 Quercus lobata HOM05D000240 ORTHO05D003213 5.4e-07 58.5 107 33.6
QL04p081146 Quercus lobata HOM05D000107 ORTHO05D003213 5.4e-07 58.5 107 33.6
Rhsim05G0124400 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.4e-07 58.5 119 30.3
Rhsim11G0024300 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.4e-07 58.5 119 30.3
TPR.G34585 Trifolium pratense HOM05D000107 ORTHO05D000062 5.4e-07 58.5 117 31.6
CSS0020531 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 7.1e-07 58.2 94 35.1
Rhsim09G0074400 Rhododendron simsii HOM05D000107 ORTHO05D000062 7.1e-07 58.2 131 31.3
AL1G63190 Arabidopsis lyrata HOM05D008309 ORTHO05D010308 9.2e-07 57.8 106 31.1
EL10Ac7g17483 Beta vulgaris HOM05D000107 ORTHO05D000062 9.2e-07 57.8 130 30.0
MBI02_g40794_MAGBIO Magnolia biondii HOM05D007906 ORTHO05D010248 9.2e-07 57.8 82 37.8
Ah.02g116370 Amaranthus hybridus HOM05D000107 ORTHO05D003213 1.2e-06 57.4 106 30.2
Ah.05g172280 Amaranthus hybridus HOM05D000107 ORTHO05D003213 1.2e-06 57.4 117 29.9
AUR62040877 Chenopodium quinoa HOM05D000107 ORTHO05D000062 1.2e-06 57.4 100 28.0
FvH4_4g10051 Fragaria vesca HOM05D000107 ORTHO05D003213 1.2e-06 57.4 119 32.8
PSO832G1652 Papaver somniferum HOM05D000107 ORTHO05D000062 1.2e-06 57.4 116 34.5
Rhsim10G0071800 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.2e-06 57.4 109 27.5
SHI46859 Sapria himalayana HOM05D000107 ORTHO05D000062 1.2e-06 57.4 107 30.8
AL1G66070 Arabidopsis lyrata HOM05D000107 ORTHO05D000062 1.6e-06 57.0 106 31.1
AUR62038589 Chenopodium quinoa HOM05D000107 ORTHO05D000233 1.6e-06 57.0 100 34.0
PSO478G1773 Papaver somniferum HOM05D000107 ORTHO05D000062 2.1e-06 56.6 116 34.5
QL05p055903 Quercus lobata HOM05D000240 ORTHO05D003213 2.1e-06 56.6 108 33.3
RhsimUnG0018000 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.1e-06 56.6 138 27.5
CANSAT56G0128 Cannabis sativa HOM05D024511 ORTHO05D003213 2.7e-06 56.2 112 27.7
AUR62028503 Chenopodium quinoa HOM05D000107 ORTHO05D000062 2.7e-06 56.2 116 31.0
FvH4_3g22852 Fragaria vesca HOM05D000107 ORTHO05D000062 2.7e-06 56.2 109 32.1
Lj8C456G3 Lonicera japonica HOM05D000107 ORTHO05D000062 2.7e-06 56.2 106 29.2
PSO541G1738 Papaver somniferum HOM05D000107 ORTHO05D000062 2.7e-06 56.2 116 34.5
Ah.02g119940 Amaranthus hybridus HOM05D030568 ORTHO05D003213 3.5e-06 55.8 98 28.6
Aqoxy2G02171 Aquilegia oxysepala HOM05D000107 ORTHO05D000062 3.5e-06 55.8 121 29.8
EL10Ac4g08668 Beta vulgaris HOM05D000107 ORTHO05D000062 3.5e-06 55.8 93 33.3
AUR62038710 Chenopodium quinoa HOM05D000107 ORTHO05D000062 3.5e-06 55.8 96 32.3
Migut.O00078 Erythranthe guttata HOM05D000107 ORTHO05D000062 3.5e-06 55.8 109 31.2
PGSC0003DMG400001275 Solanum tuberosum HOM05D022040 ORTHO05D003213 3.5e-06 55.8 46 56.5
CANSAT78G1492 Cannabis sativa HOM05D000107 ORTHO05D000062 4.6e-06 55.5 114 30.7
AUR62039442 Chenopodium quinoa HOM05D000107 ORTHO05D000062 4.6e-06 55.5 59 42.4
Rhsim01G0119700 Rhododendron simsii HOM05D000107 ORTHO05D003213 4.6e-06 55.5 120 31.7
FvH4_6g23352 Fragaria vesca HOM05D000107 ORTHO05D000062 6.0e-06 55.1 115 33.0
CSS0008037 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 7.8e-06 54.7 74 40.5
CSS0038597 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 7.8e-06 54.7 74 40.5
FvH4_6g31292 Fragaria vesca HOM05D000107 ORTHO05D000062 7.8e-06 54.7 94 31.9
Hma1.2p1_0448F.1_g154820 Hydrangea macrophylla HOM05D000107 ORTHO05D000062 7.8e-06 54.7 77 37.7
Nitab4.5_0000757g0030 Nicotiana tabacum HOM05D003120 ORTHO05D010952 7.8e-06 54.7 103 29.1
PSO675G6977 Papaver somniferum HOM05D000107 ORTHO05D000062 7.8e-06 54.7 116 33.6


User provided reference genes

Program Settings