Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G282.97 Capsicum annuum HOM05D000179 ORTHO05D000107 1.3e-82 310.1 201 100.0
Nitab4.5_0000521g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 8.7e-23 111.3 159 53.5
Nitab4.5_0002202g0020 Nicotiana tabacum HOM05D000179 ORTHO05D000107 2.1e-21 106.7 159 54.1
Sopen01g001040 Solanum pennellii HOM05D000179 ORTHO05D000107 5.3e-20 102.1 154 66.2
Solyc01g005060.3 Solanum lycopersicum HOM05D000179 ORTHO05D000107 6.9e-20 101.7 154 64.9
Peaxi162Scf00033g02311 Petunia axillaris HOM05D000179 ORTHO05D000107 7.6e-19 98.2 191 40.3
COL.COLO4_27569 Corchorus olitorius HOM05D000179 ORTHO05D000107 4.3e-14 82.4 180 49.4
Dinv20496 Davidia involucrata HOM05D000179 ORTHO05D000107 1.1e-12 77.8 168 50.0
Dinv20546 Davidia involucrata HOM05D000179 ORTHO05D000107 1.1e-12 77.8 168 50.0
DCAR_030310 Daucus carota HOM05D000179 ORTHO05D000107 4.0e-12 75.9 172 36.6
arahy.Tifrunner.gnm1.ann1.Y8ZFR1 Arachis hypogaea HOM05D000179 ORTHO05D000107 5.3e-12 75.5 179 43.0
Psat7g084640 Pisum sativum HOM05D000179 ORTHO05D000107 6.9e-12 75.1 173 52.0
Gohir.A01G145200 Gossypium hirsutum HOM05D000179 ORTHO05D000107 9.0e-12 74.7 165 49.1
Hma1.2p1_0095F.1_g047490 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 1.2e-11 74.3 163 45.4
Gohir.D01G135100 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.5e-11 73.9 165 48.5
Gorai.002G171100 Gossypium raimondii HOM05D000179 ORTHO05D000107 1.5e-11 73.9 165 48.5
Thecc.02G302800 Theobroma cacao HOM05D000179 ORTHO05D000107 1.5e-11 73.9 179 39.1
Actinidia13744 Actinidia chinensis HOM05D000179 ORTHO05D000107 2.0e-11 73.6 168 48.2
Actinidia20102 Actinidia chinensis HOM05D000179 ORTHO05D000107 2.6e-11 73.2 168 50.0
arahy.Tifrunner.gnm1.ann1.MG2JR8 Arachis hypogaea HOM05D000179 ORTHO05D000107 2.6e-11 73.2 179 43.0
Gohir.A03G091000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 3.4e-11 72.8 185 44.3
Peaxi162Scf00171g00727 Petunia axillaris HOM05D000179 ORTHO05D000107 4.5e-11 72.4 169 45.0
Ca_18195_v3 Cicer arietinum L. HOM05D000179 ORTHO05D000107 5.8e-11 72.0 179 45.8
Lj4g0000221 Lotus japonicus HOM05D000179 ORTHO05D000107 7.6e-11 71.6 178 46.1
Potri.010G101200 Populus trichocarpa HOM05D000179 ORTHO05D000107 7.6e-11 71.6 178 47.8
Gohir.A03G113400 Gossypium hirsutum HOM05D000179 ORTHO05D000107 9.9e-11 71.2 178 47.8
Gohir.D02G119300 Gossypium hirsutum HOM05D000179 ORTHO05D000107 9.9e-11 71.2 184 45.1
Gorai.005G154300 Gossypium raimondii HOM05D000179 ORTHO05D000107 9.9e-11 71.2 178 47.8
Prupe.1G338700 Prunus persica HOM05D000179 ORTHO05D000107 9.9e-11 71.2 187 46.0
Duzib251G0522 Durio zibethinus HOM05D000179 ORTHO05D000107 1.3e-10 70.9 179 46.4
Gorai.005G134600 Gossypium raimondii HOM05D000179 ORTHO05D000107 1.3e-10 70.9 184 44.6
Actinidia34645 Actinidia chinensis HOM05D000179 ORTHO05D000107 1.7e-10 70.5 132 50.8
Gorai.006G190500 Gossypium raimondii HOM05D000179 ORTHO05D000107 1.7e-10 70.5 191 39.8
GSVIVG01011587001 Vitis vinifera HOM05D000179 ORTHO05D000107 1.7e-10 70.5 164 52.4
Lsat_1_v5_gn_5_34921 Lactuca sativa HOM05D000179 ORTHO05D000107 2.2e-10 70.1 165 40.0
QL03p039252 Quercus lobata HOM05D000179 ORTHO05D000107 2.2e-10 70.1 171 43.3
RcHm_v2.0_Chr4g0445361 Rosa chinensis HOM05D000179 ORTHO05D000107 2.2e-10 70.1 184 44.6
TWI74G0208 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 2.2e-10 70.1 173 49.1
HanXRQChr12g0366021 Helianthus annuus HOM05D000179 ORTHO05D000107 2.9e-10 69.7 166 47.6
Sabra10G0073800 Salix brachista HOM05D000179 ORTHO05D000107 6.4e-10 68.6 185 43.8
DCAR_002642 Daucus carota HOM05D000179 ORTHO05D000107 8.4e-10 68.2 176 35.8
Gohir.D02G137800 Gossypium hirsutum HOM05D000179 ORTHO05D000107 8.4e-10 68.2 178 47.2
Rhsim09G0084600 Rhododendron simsii HOM05D000179 ORTHO05D000107 8.4e-10 68.2 177 49.2
Sabra08G0106400 Salix brachista HOM05D000179 ORTHO05D000107 8.4e-10 68.2 186 46.8
Ciclev10015315m.g Citrus clementina HOM05D000179 ORTHO05D000107 1.1e-09 67.8 176 45.5
Eucgr.H00574 Eucalyptus grandis HOM05D000179 ORTHO05D000107 1.4e-09 67.4 162 47.5
ECA233G0140 Erigeron canadensis HOM05D000179 ORTHO05D000107 1.9e-09 67.0 158 47.5
CSS0005172 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 2.4e-09 66.6 160 48.1
CSS0010097 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 2.4e-09 66.6 160 48.1
arahy.Tifrunner.gnm1.ann1.MP8D0L Arachis hypogaea HOM05D000179 ORTHO05D000107 3.2e-09 66.2 199 41.7
CiPaw.05G159500 Carya illinoinensis HOM05D000179 ORTHO05D000107 4.2e-09 65.9 185 43.2
HanXRQChr17g0566341 Helianthus annuus HOM05D000179 ORTHO05D000107 7.1e-09 65.1 129 58.1
Lalb_Chr07g0187971 Lupinus albus HOM05D000179 ORTHO05D000107 7.1e-09 65.1 184 43.5
TWI53G1503 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 7.1e-09 65.1 172 46.5
Nitab4.5_0004454g0060 Nicotiana tabacum HOM05D000179 ORTHO05D000107 9.3e-09 64.7 176 43.2
Lsat_1_v5_gn_8_34221 Lactuca sativa HOM05D000179 ORTHO05D000107 1.2e-08 64.3 164 45.1
Manes.15G139200 Manihot esculenta HOM05D000179 ORTHO05D000107 1.2e-08 64.3 180 48.3
Phvul.004G145900 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 1.6e-08 63.9 173 42.2
CANSAT78G1491 Cannabis sativa HOM05D000179 ORTHO05D000107 2.1e-08 63.5 173 46.2
CDE05G0391 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 2.1e-08 63.5 182 42.3
CDE11G1049 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 2.1e-08 63.5 194 44.8
Glyma.05G137000 Glycine max HOM05D000179 ORTHO05D000107 2.1e-08 63.5 103 66.0
VMungo0251G2660 Vigna mungo HOM05D000179 ORTHO05D000107 2.1e-08 63.5 184 41.8
Duzib268G1689 Durio zibethinus HOM05D000179 ORTHO05D000107 2.7e-08 63.2 179 46.9
CAN.G637.28 Capsicum annuum HOM05D000179 ORTHO05D000107 3.5e-08 62.8 172 41.9
Cc11_g05630 Coffea canephora HOM05D000179 ORTHO05D000107 3.5e-08 62.8 163 50.9
Gohir.D12G272500 Gossypium hirsutum HOM05D000179 ORTHO05D000107 3.5e-08 62.8 163 49.1
Gorai.008G293000 Gossypium raimondii HOM05D000179 ORTHO05D000107 3.5e-08 62.8 163 49.1
HanXRQChr16g0527681 Helianthus annuus HOM05D000179 ORTHO05D000107 3.5e-08 62.8 129 58.9
Nitab4.5_0002870g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 3.5e-08 62.8 175 44.0
Glyma.08G092300 Glycine max HOM05D000179 ORTHO05D000107 4.6e-08 62.4 191 41.4
AUR62042463 Chenopodium quinoa HOM05D000179 ORTHO05D000107 6.0e-08 62.0 149 45.0
Duzib248G1237 Durio zibethinus HOM05D000179 ORTHO05D000107 6.0e-08 62.0 183 45.9
ECA234G2438 Erigeron canadensis HOM05D000179 ORTHO05D000107 6.0e-08 62.0 129 58.1
Gohir.D09G169000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 7.9e-08 61.6 191 39.3
MD13G1015000 Malus domestica HOM05D000179 ORTHO05D000107 7.9e-08 61.6 196 41.3
Potri.008G140400 Populus trichocarpa HOM05D000179 ORTHO05D000107 7.9e-08 61.6 186 45.7
VMungo0464G1769 Vigna mungo HOM05D000179 ORTHO05D000107 7.9e-08 61.6 174 40.2
FAN12G4002 Fragaria x ananassa HOM05D000179 ORTHO05D000107 1.0e-07 61.2 182 42.3
Lalb_Chr14g0370451 Lupinus albus HOM05D000179 ORTHO05D028851 1.0e-07 61.2 125 32.8
Glyma.09G170200 Glycine max HOM05D000179 ORTHO05D000107 1.3e-07 60.8 119 52.1
Lalb_Chr24g0398321 Lupinus albus HOM05D000179 ORTHO05D000107 1.3e-07 60.8 121 46.3
Atru.chr11.991 Acer truncatum HOM05D000179 ORTHO05D000107 1.8e-07 60.5 174 44.3
CDE05G3493 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 1.8e-07 60.5 197 40.6
FvH4_5g17840 Fragaria vesca HOM05D000179 ORTHO05D000107 1.8e-07 60.5 155 46.5
FAN07G0055 Fragaria x ananassa HOM05D000179 ORTHO05D000107 1.8e-07 60.5 184 42.9
RcHm_v2.0_Chr7g0177741 Rosa chinensis HOM05D000179 ORTHO05D000107 1.8e-07 60.5 178 42.1
Sopen03g028770 Solanum pennellii HOM05D000179 ORTHO05D000107 1.8e-07 60.5 182 40.1
FvH4_4g35830 Fragaria vesca HOM05D000179 ORTHO05D000107 2.3e-07 60.1 182 42.3
FAN17G2176 Fragaria x ananassa HOM05D000179 ORTHO05D000107 2.3e-07 60.1 184 40.2
PGSC0003DMG400031049 Solanum tuberosum HOM05D000179 ORTHO05D000107 2.3e-07 60.1 176 40.3
ClCG01G006810 Citrullus lanatus HOM05D000179 ORTHO05D000107 3.0e-07 59.7 161 34.2
Manes.06G001400 Manihot esculenta HOM05D000179 ORTHO05D000107 3.0e-07 59.7 110 56.4
Potri.012G040200 Populus trichocarpa HOM05D000179 ORTHO05D000107 3.0e-07 59.7 103 56.3
Haze_18953 Corylus avellana HOM05D000179 ORTHO05D000107 3.9e-07 59.3 154 48.7
FAN18G2644 Fragaria x ananassa HOM05D000179 ORTHO05D000107 3.9e-07 59.3 152 46.7
Gohir.A05G308250 Gossypium hirsutum HOM05D000179 ORTHO05D000107 3.9e-07 59.3 166 45.2
HanXRQChr08g0224321 Helianthus annuus HOM05D000179 ORTHO05D000107 3.9e-07 59.3 158 44.3
ATR0598G149 Amborella trichopoda HOM05D000179 ORTHO05D000107 5.1e-07 58.9 192 40.6
Cfa020662 Carpinus fangiana HOM05D000179 ORTHO05D000107 5.1e-07 58.9 187 43.9
CiPaw.06G058100 Carya illinoinensis HOM05D000179 ORTHO05D000107 5.1e-07 58.9 172 45.3
Phvul.002G184700 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 5.1e-07 58.9 106 67.9
arahy.Tifrunner.gnm1.ann1.DDPG02 Arachis hypogaea HOM05D000179 ORTHO05D000107 6.7e-07 58.5 199 39.2
CSS0034127 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 6.7e-07 58.5 189 46.0
Cfa022225 Carpinus fangiana HOM05D000179 ORTHO05D000107 6.7e-07 58.5 182 47.8
Dinv09767 Davidia involucrata HOM05D000179 ORTHO05D000107 6.7e-07 58.5 197 41.6
Glyma.07G107500 Glycine max HOM05D000179 ORTHO05D000107 6.7e-07 58.5 114 48.2
Gohir.A11G002000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 6.7e-07 58.5 132 43.9
Oeu007933.1 Olea europaea HOM05D000179 ORTHO05D000107 6.7e-07 58.5 157 30.6
Sed0012942 Sechium edule HOM05D000179 ORTHO05D000107 6.7e-07 58.5 161 46.6
Solyc03g098070.3 Solanum lycopersicum HOM05D000179 ORTHO05D000107 6.7e-07 58.5 176 39.8
TPR.G11877 Trifolium pratense HOM05D000179 ORTHO05D000107 6.7e-07 58.5 141 53.2
MELO3C005237.2 Cucumis melo HOM05D000179 ORTHO05D000107 8.7e-07 58.2 161 44.7
FAN08G1538 Fragaria x ananassa HOM05D000179 ORTHO05D000107 8.7e-07 58.2 155 46.5
FAN13G0721 Fragaria x ananassa HOM05D000179 ORTHO05D000107 8.7e-07 58.2 155 45.8
FAN22G2121 Fragaria x ananassa HOM05D000179 ORTHO05D000107 8.7e-07 58.2 182 40.1
Gohir.A12G271800 Gossypium hirsutum HOM05D000179 ORTHO05D000107 8.7e-07 58.2 163 47.9
Hma1.2p1_0471F.1_g159300 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 8.7e-07 58.2 173 42.8
CsaV3_1G004880 Cucumis sativus L. HOM05D000179 ORTHO05D000107 1.1e-06 57.8 144 52.1
FAN04G1785 Fragaria x ananassa HOM05D000179 ORTHO05D000107 1.1e-06 57.8 152 46.1
Gorai.009G329200 Gossypium raimondii HOM05D000179 ORTHO05D000107 1.1e-06 57.8 166 44.6
Actinidia39836 Actinidia chinensis HOM05D000179 ORTHO05D000107 1.5e-06 57.4 136 39.7
Gohir.D05G308900 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.5e-06 57.4 166 44.6
MD14G1241600 Malus domestica HOM05D000179 ORTHO05D000107 1.5e-06 57.4 114 51.8
Ciclev10020125m.g Citrus clementina HOM05D000179 ORTHO05D000107 1.9e-06 57.0 185 42.2
CsaV3_5G017150 Cucumis sativus L. HOM05D000179 ORTHO05D000107 1.9e-06 57.0 161 44.1
MD06G1234600 Malus domestica HOM05D000179 ORTHO05D000107 1.9e-06 57.0 114 50.9
Solyc06g072360.3 Solanum lycopersicum HOM05D000179 ORTHO05D000107 1.9e-06 57.0 145 47.6
CAN.G65.84 Capsicum annuum HOM05D000179 ORTHO05D000107 2.5e-06 56.6 152 30.9
MELO3C001929.2 Cucumis melo HOM05D000179 ORTHO05D000107 2.5e-06 56.6 146 51.4
Prupe.5G239100 Prunus persica HOM05D000179 ORTHO05D000107 2.5e-06 56.6 118 54.2
CDE05G0728 Ceratophyllum demersum HOM05D000229 ORTHO05D000182 3.3e-06 56.2 172 42.4
Lalb_Chr05g0221461 Lupinus albus HOM05D000179 ORTHO05D000107 3.3e-06 56.2 107 47.7
Nn4g24574 Nelumbo nucifera HOM05D000179 ORTHO05D000107 3.3e-06 56.2 195 40.0
Duzib068G0009 Durio zibethinus HOM05D000179 ORTHO05D000107 4.3e-06 55.8 121 42.1
Psat1g124720 Pisum sativum HOM05D000179 ORTHO05D000107 4.3e-06 55.8 114 48.2
Lsat_1_v5_gn_4_22261 Lactuca sativa HOM05D000179 ORTHO05D000107 5.6e-06 55.5 129 48.1
Nn3g18479 Nelumbo nucifera HOM05D000179 ORTHO05D000107 5.6e-06 55.5 198 41.4
AUR62041592 Chenopodium quinoa HOM05D000179 ORTHO05D000107 7.4e-06 55.1 150 43.3
Gohir.A09G173300 Gossypium hirsutum HOM05D000179 ORTHO05D000107 7.4e-06 55.1 188 44.7
MSTRG.9361 Avicennia marina HOM05D000179 ORTHO05D000107 9.6e-06 54.7 109 30.3
MD16G1012300 Malus domestica HOM05D000179 ORTHO05D000107 9.6e-06 54.7 202 40.1
Sopen06g028730 Solanum pennellii HOM05D000179 ORTHO05D000107 9.6e-06 54.7 145 49.7


User provided reference genes

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