Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G282.93 Capsicum annuum HOM05D003290 ORTHO05D003866 1.5e-311 1072.0 552 100.0
CAN.G282.94 Capsicum annuum HOM05D003290 ORTHO05D003866 1.7e-254 882.5 499 91.4
Sopen01g001090 Solanum pennellii HOM05D003290 ORTHO05D003866 8.2e-233 810.4 498 84.5
PGSC0003DMG400022786 Solanum tuberosum HOM05D003290 ORTHO05D003866 8.2e-233 810.4 498 84.7
Solyc01g005020.3 Solanum lycopersicum HOM05D003290 ORTHO05D003866 1.5e-231 806.2 498 83.9
Nitab4.5_0001529g0040 Nicotiana tabacum HOM05D003290 ORTHO05D003866 9.4e-221 770.4 498 80.5
Peaxi162Scf00349g00111 Petunia axillaris HOM05D003290 ORTHO05D003866 5.0e-214 748.0 495 78.4
Nitab4.5_0007122g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 6.8e-179 631.3 378 85.4
Cc11_g05260 Coffea canephora HOM05D003290 ORTHO05D003866 2.5e-157 559.7 483 61.3
Migut.E00570 Erythranthe guttata HOM05D003290 ORTHO05D003866 2.9e-153 546.2 492 60.2
MSTRG.2101 Avicennia marina HOM05D003290 ORTHO05D003866 1.8e-150 537.0 491 58.0
Actinidia12429 Actinidia chinensis HOM05D003290 ORTHO05D003866 8.7e-150 534.6 502 59.6
CANSAT78G1043 Cannabis sativa HOM05D003290 ORTHO05D003866 1.8e-147 526.9 500 57.4
PGR142G0945 Punica granatum HOM05D003290 ORTHO05D003866 2.0e-146 523.5 510 56.9
RcHm_v2.0_Chr4g0445491 Rosa chinensis HOM05D003290 ORTHO05D003866 1.0e-145 521.2 502 57.6
vmacro10756 Vaccinium macrocarpon HOM05D003290 ORTHO05D003866 1.0e-145 521.2 531 54.6
DCAR_030317 Daucus carota HOM05D003290 ORTHO05D003866 2.2e-145 520.0 502 56.4
GSVIVG01011573001 Vitis vinifera HOM05D003290 ORTHO05D003866 5.5e-144 515.4 494 57.7
FAN12G1356 Fragaria x ananassa HOM05D003290 ORTHO05D003866 1.6e-143 513.8 502 56.8
Prupe.1G339200 Prunus persica HOM05D003290 ORTHO05D003866 1.6e-143 513.8 501 55.7
Hma1.2p1_0197F.1_g085170 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 2.1e-143 513.5 495 57.4
Atru.chr11.983 Acer truncatum HOM05D003290 ORTHO05D003866 2.7e-143 513.1 501 57.7
SGA_v2.0_scaffold348G49593 Striga asiatica HOM05D003290 ORTHO05D003866 2.7e-143 513.1 495 57.2
Eucgr.G02062 Eucalyptus grandis HOM05D003290 ORTHO05D003866 1.5e-141 507.3 491 56.0
Nn4g24593 Nelumbo nucifera HOM05D003290 ORTHO05D003866 2.5e-141 506.5 500 55.6
Rhsim09G0082800 Rhododendron simsii HOM05D003290 ORTHO05D003866 9.6e-141 504.6 566 51.1
Potri.010G100900 Populus trichocarpa HOM05D003290 ORTHO05D003866 1.6e-140 503.8 500 57.0
Thecc.02G301400 Theobroma cacao HOM05D003290 ORTHO05D003866 3.7e-140 502.7 502 55.8
Dinv07020 Davidia involucrata HOM05D003290 ORTHO05D003866 7.6e-138 495.0 398 64.1
Potri.008G140700 Populus trichocarpa HOM05D003290 ORTHO05D003866 1.0e-137 494.6 492 56.9
ECA234G2339 Erigeron canadensis HOM05D003290 ORTHO05D003866 1.3e-137 494.2 520 53.5
TWI74G0523 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 3.8e-137 492.7 493 55.8
Manes.15G139900 Manihot esculenta HOM05D003290 ORTHO05D003866 1.9e-136 490.3 500 55.4
Lj6C728G5 Lonicera japonica HOM05D003290 ORTHO05D003866 5.5e-136 488.8 497 55.7
FAN22G1284 Fragaria x ananassa HOM05D003290 ORTHO05D003866 9.3e-136 488.0 503 55.3
TAR629G0420 Trochodendron aralioides HOM05D003290 ORTHO05D003866 2.1e-135 486.9 502 53.6
COL.COLO4_27555 Corchorus olitorius HOM05D003290 ORTHO05D003866 2.7e-135 486.5 502 55.8
Gohir.A03G113800 Gossypium hirsutum HOM05D003290 ORTHO05D003866 1.0e-134 484.6 504 54.2
Sabra08G0106800 Salix brachista HOM05D003290 ORTHO05D003866 2.3e-134 483.4 491 55.2
FvH4_4g35880 Fragaria vesca HOM05D003290 ORTHO05D003866 3.0e-134 483.0 503 54.5
Cfa015081 Carpinus fangiana HOM05D003290 ORTHO05D003866 1.1e-133 481.1 492 55.5
Lalb_Chr13g0293001 Lupinus albus HOM05D003290 ORTHO05D003866 1.9e-133 480.3 492 53.7
unitig_699.g19544 Utricularia gibba HOM05D003290 ORTHO05D003866 5.7e-133 478.8 494 54.5
THA.LOC104805106 Tarenaya hassleriana HOM05D003290 ORTHO05D003866 7.4e-133 478.4 503 54.5
AUR62003491 Chenopodium quinoa HOM05D003290 ORTHO05D003866 1.3e-132 477.6 496 53.6
Gohir.D02G138100 Gossypium hirsutum HOM05D003290 ORTHO05D003866 1.3e-132 477.6 504 53.6
Gorai.005G154600 Gossypium raimondii HOM05D003290 ORTHO05D003866 2.2e-132 476.9 504 53.4
CiPaw.05G159900 Carya illinoinensis HOM05D003290 ORTHO05D003866 3.7e-132 476.1 481 56.5
MBI13_g17879_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 4.8e-132 475.7 504 54.4
MELO3C005228.2 Cucumis melo HOM05D003290 ORTHO05D003866 3.1e-131 473.0 490 53.5
Sc03g0005960 Simmondsia chinensis HOM05D003290 ORTHO05D003866 4.1e-131 472.6 499 52.5
TWI56G1413 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 1.2e-130 471.1 493 53.8
Ciclev10015265m.g Citrus clementina HOM05D003290 ORTHO05D003866 1.5e-130 470.7 455 56.7
CsaV3_5G017250 Cucumis sativus L. HOM05D003290 ORTHO05D003866 2.0e-130 470.3 490 53.3
AUR62017800 Chenopodium quinoa HOM05D003290 ORTHO05D003866 3.8e-129 466.1 497 53.1
EL10Ac6g15381 Beta vulgaris HOM05D003290 ORTHO05D003866 1.9e-128 463.8 497 51.5
CSS0011262 Camellia sinensis var. sinensis HOM05D003290 ORTHO05D003866 3.2e-128 463.0 494 54.9
Lsat_1_v5_gn_5_35481 Lactuca sativa HOM05D003290 ORTHO05D003866 4.2e-128 462.6 506 51.8
arahy.Tifrunner.gnm1.ann1.4ZG746 Arachis hypogaea HOM05D003290 ORTHO05D003866 5.5e-128 462.2 508 52.4
arahy.Tifrunner.gnm1.ann1.GST19D Arachis hypogaea HOM05D003290 ORTHO05D003866 5.5e-128 462.2 508 52.4
arahy.Tifrunner.gnm1.ann1.P8F85A Arachis hypogaea HOM05D003290 ORTHO05D003866 7.2e-128 461.8 508 52.4
HanXRQChr15g0469331 Helianthus annuus HOM05D003290 ORTHO05D003866 9.4e-128 461.5 508 52.0
Sed0007344 Sechium edule HOM05D003290 ORTHO05D003866 1.2e-127 461.1 483 52.8
TPR.G11847 Trifolium pratense HOM05D003290 ORTHO05D003866 6.1e-127 458.8 491 51.5
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 1.8e-126 457.2 342 67.5
Ah.03g147350 Amaranthus hybridus HOM05D003290 ORTHO05D003866 2.3e-126 456.8 538 48.0
Lj4g0019755 Lotus japonicus HOM05D003290 ORTHO05D003866 9.7e-125 451.4 457 52.1
Duzib268G0109 Durio zibethinus HOM05D003290 ORTHO05D003866 2.2e-124 450.3 509 51.7
Manes.17G091100 Manihot esculenta HOM05D003290 ORTHO05D003866 1.8e-123 447.2 496 51.8
ATR0598G076 Amborella trichopoda HOM05D003290 ORTHO05D003866 6.9e-123 445.3 502 50.6
Ca_18198_v3 Cicer arietinum L. HOM05D003290 ORTHO05D003866 2.2e-121 440.3 443 53.3
ClCG01G006860 Citrullus lanatus HOM05D003290 ORTHO05D003866 2.5e-120 436.8 552 47.1
CiPaw.05G160100 Carya illinoinensis HOM05D003290 ORTHO05D003866 7.2e-120 435.3 388 59.8
Psat7g085560 Pisum sativum HOM05D003290 ORTHO05D003866 1.6e-119 434.1 491 49.7
Aa31LG2G7940 Aethionema arabicum HOM05D003290 ORTHO05D003866 4.7e-119 432.6 490 51.2
Sp2g13410 Schrenkiella parvula HOM05D003290 ORTHO05D003866 4.7e-119 432.6 488 51.4
Glyma.08G092000 Glycine max HOM05D003290 ORTHO05D003866 1.8e-118 430.6 446 53.6
Phvul.002G185150 Phaseolus vulgaris HOM05D003290 ORTHO05D003866 1.8e-118 430.6 447 54.4
VMungo0251G2069 Vigna mungo HOM05D003290 ORTHO05D003866 2.3e-118 430.3 445 53.3
AT2G01980 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 3.9e-118 429.5 486 52.1
Thhalv10003547m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 5.2e-118 429.1 438 56.6
FAN07G0883 Fragaria x ananassa HOM05D003290 ORTHO05D003866 8.8e-118 428.3 505 50.5
PSO017G1263 Papaver somniferum HOM05D003290 ORTHO05D003866 4.4e-117 426.0 496 49.0
Carub.0005s0099 Capsella rubella HOM05D003290 ORTHO05D003866 3.7e-116 422.9 486 51.4
AL5G11170 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 1.4e-115 421.0 487 51.3
BcaB07g30722 Brassica carinata HOM05D003290 ORTHO05D003866 5.3e-115 419.1 489 50.5
BolC9t55917H Brassica oleracea HOM05D003290 ORTHO05D003866 4.5e-114 416.0 472 51.3
A09p23700 Brassica napus HOM05D003290 ORTHO05D003866 2.2e-113 413.7 472 51.1
HPP92_016411 Vanilla planifolia HOM05D003290 ORTHO05D003866 3.8e-113 412.9 497 49.5
BcaC04g21541 Brassica carinata HOM05D003290 ORTHO05D003866 6.5e-113 412.1 472 50.8
BraA09t37969Z Brassica rapa HOM05D003290 ORTHO05D003866 8.5e-113 411.8 472 50.8
C09p30540 Brassica napus HOM05D003290 ORTHO05D003866 3.2e-112 409.8 472 50.6
DCAR_030318 Daucus carota HOM05D003290 ORTHO05D003866 6.1e-111 405.6 391 53.7
CDE06G1581 Ceratophyllum demersum HOM05D003290 ORTHO05D003866 3.0e-110 403.3 490 46.9
CARHR144580 Cardamine hirsuta HOM05D003290 ORTHO05D003866 6.5e-105 385.6 437 51.5
Lj4g0008630 Lotus japonicus HOM05D003290 ORTHO05D003866 6.5e-105 385.6 390 52.1
Cpa.g.sc2.68 Carica papaya HOM05D003290 ORTHO05D003866 7.2e-104 382.1 286 64.3
Zm00001eb033240 Zea mays HOM05D003290 ORTHO05D003866 1.5e-101 374.4 511 45.0
PSO729G0139 Papaver somniferum HOM05D003290 ORTHO05D003866 2.8e-100 370.2 490 45.1
Aqoxy4G00109 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 1.4e-99 367.9 464 45.5
PSO170G6380 Papaver somniferum HOM05D003290 ORTHO05D003866 6.5e-97 359.0 362 53.6
PSO170G2638 Papaver somniferum HOM05D003290 ORTHO05D003866 7.2e-96 355.5 362 52.8
Haze_10795 Corylus avellana HOM05D003290 ORTHO05D003866 1.2e-95 354.8 286 64.7
unitig_27.g25301 Utricularia gibba HOM05D003290 ORTHO05D003866 4.4e-93 346.3 503 43.5
QL03p039662 Quercus lobata HOM05D003290 ORTHO05D003866 1.3e-92 344.7 889 31.9
Os12g0641100 Oryza sativa ssp. japonica HOM05D003290 ORTHO05D003866 1.1e-91 341.7 451 44.3
PSO339G1388 Papaver somniferum HOM05D003290 ORTHO05D003866 7.7e-90 335.5 367 49.6
ECA246G3356 Erigeron canadensis HOM05D003290 ORTHO05D003866 5.4e-83 312.8 382 46.3
Pp3c22_9570 Physcomitrium patens HOM05D003290 ORTHO05D003866 1.1e-80 305.1 524 37.2
AagrBONN_evm.TU.Sc2ySwM_368.1085 Anthoceros agrestis HOM05D003290 ORTHO05D003866 1.6e-79 301.2 509 38.7
Mapoly0062s0025 Marchantia polymorpha HOM05D003290 ORTHO05D003866 6.2e-79 299.3 509 37.1
HanXRQChr12g0381631 Helianthus annuus HOM05D003290 ORTHO05D003866 2.0e-77 294.3 311 51.4
Mapoly0206s0002 Marchantia polymorpha HOM05D003290 ORTHO05D003866 5.8e-77 292.7 513 37.4
SMO367G0872 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 3.6e-71 273.5 279 48.7
Pp3c16_14280 Physcomitrium patens HOM05D003290 ORTHO05D003866 1.7e-68 264.6 317 45.4
SMO367G0300 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 1.2e-63 248.4 354 40.7
AagrBONN_evm.TU.Sc2ySwM_344.5331 Anthoceros agrestis HOM05D003290 ORTHO05D003866 6.2e-63 246.1 310 41.6
Hma1.2p1_0068F.1_g037320 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 2.3e-62 244.2 160 70.0
Eucgr.B02635 Eucalyptus grandis HOM05D003290 ORTHO05D003866 1.3e-60 238.4 316 41.5
SEGI_17003 Sequoiadendron giganteum HOM05D003290 ORTHO05D003866 4.9e-60 236.5 202 57.9
MD16G1011300 Malus domestica HOM05D003290 ORTHO05D003866 1.0e-57 228.8 172 63.4
CAN.G1237.29 Capsicum annuum HOM05D003290 ORTHO05D003866 4.3e-56 223.4 311 38.6
Peaxi162Scf00130g01216 Petunia axillaris HOM05D003290 ORTHO05D003866 7.3e-56 222.6 313 38.7
MD13G1014100 Malus domestica HOM05D003290 ORTHO05D003866 3.1e-54 217.2 291 47.8
PGR102G1943 Punica granatum HOM05D003290 ORTHO05D003866 8.9e-54 215.7 310 40.3
CAN.G282.92 Capsicum annuum HOM05D003290 ORTHO05D003866 1.5e-53 214.9 130 86.9
Aqoxy3G04046 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 1.9e-51 208.0 299 45.2
Solyc04g018100.4 Solanum lycopersicum HOM05D003290 ORTHO05D003866 4.2e-51 206.8 311 37.6
Nitab4.5_0009873g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 3.5e-50 203.8 276 40.6
Nitab4.5_0005031g0060 Nicotiana tabacum HOM05D003290 ORTHO05D003866 1.9e-40 171.4 210 41.4
Aa31LG2G2650 Aethionema arabicum HOM05D003290 ORTHO05D003866 3.8e-36 157.1 153 50.3
Haze_10794 Corylus avellana HOM05D003290 ORTHO05D003866 9.6e-32 142.5 208 45.2
Cpa.g.sc2.70 Carica papaya HOM05D003290 ORTHO05D003866 1.2e-29 135.6 219 42.5
SEGI_28338 Sequoiadendron giganteum HOM05D003290 ORTHO05D003866 2.7e-26 124.4 309 33.0
arahy.Tifrunner.gnm1.ann1.DQT168 Arachis hypogaea HOM05D003290 ORTHO05D003866 5.1e-25 120.2 103 60.2
BcaB02g06535 Brassica carinata HOM05D003290 ORTHO05D003866 2.2e-20 104.8 87 57.5
Sp1g13020 Schrenkiella parvula HOM05D003290 ORTHO05D003866 5.0e-20 103.6 72 68.1
Thhalv10006906m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 3.2e-19 100.9 75 65.3
Sp1g13040 Schrenkiella parvula HOM05D003290 ORTHO05D003866 3.2e-19 100.9 74 64.9
BcaC05g25381 Brassica carinata HOM05D003290 ORTHO05D003866 4.2e-19 100.5 75 64.0
AT1G14660 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 2.7e-18 97.8 87 59.8
CARHR015150 Cardamine hirsuta HOM05D003290 ORTHO05D003866 2.7e-18 97.8 87 57.5
Carub.0001s1442 Capsella rubella HOM05D003290 ORTHO05D003866 3.6e-18 97.4 82 57.3
A06p10710 Brassica napus HOM05D003290 ORTHO05D003866 6.1e-18 96.7 75 61.3
BraA06t24252Z Brassica rapa HOM05D003290 ORTHO05D003866 6.1e-18 96.7 75 61.3
BcaC05g25383 Brassica carinata HOM05D003290 ORTHO05D003866 1.0e-17 95.9 75 60.0
BolC5t30005H Brassica oleracea HOM05D003290 ORTHO05D003866 1.0e-17 95.9 75 60.0
AL1G26630 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 3.0e-17 94.4 87 57.5
C05p12620 Brassica napus HOM05D003290 ORTHO05D003866 6.7e-17 93.2 75 58.7
Hma1.2p1_0068F.1_g037310 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 3.3e-16 90.9 186 36.6
Potri.007G100500 Populus trichocarpa HOM05D003290 ORTHO05D003866 3.3e-16 90.9 103 52.4
Sp1g13030 Schrenkiella parvula HOM05D003290 ORTHO05D003866 4.3e-16 90.5 71 59.2
Lsat_1_v5_gn_6_55260 Lactuca sativa HOM05D003290 ORTHO05D003866 3.1e-14 84.3 93 47.3
HanXRQChr13g0400621 Helianthus annuus HOM05D003290 ORTHO05D003866 4.1e-14 84.0 112 45.5
MD16G1011400 Malus domestica HOM05D003290 ORTHO05D003866 1.5e-13 82.0 152 38.8
Sopen00g005880 Solanum pennellii HOM05D003290 ORTHO05D003866 2.7e-10 71.2 117 36.8
Sopen04g009320 Solanum pennellii HOM05D000004 ORTHO05D000002 2.7e-10 71.2 117 36.8
Sopen04g009310 Solanum pennellii HOM05D003290 ORTHO05D003866 3.7e-07 60.8 69 43.5


User provided reference genes

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