Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 0.0e+00 1836.2 901 100.0
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1593.6 962 83.2
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1573.9 962 82.2
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 0.0e+00 1351.3 968 72.8
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 0.0e+00 1310.4 886 76.5
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1172.9 968 62.7
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1169.5 970 62.3
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1149.0 968 62.2
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1134.4 965 61.2
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1133.6 966 61.3
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1133.2 965 60.4
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1132.1 977 60.8
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1131.7 959 60.9
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1121.3 979 59.9
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1116.7 1008 58.7
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1115.9 957 61.4
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1114.0 971 61.1
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1106.7 994 59.8
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1104.4 961 60.0
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1097.4 956 60.5
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1097.0 1000 57.8
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1097.0 954 59.5
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1096.3 952 60.5
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1095.1 995 58.7
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1094.3 1020 57.7
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1094.3 932 60.9
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1094.0 949 59.3
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1093.2 972 59.1
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1091.6 985 59.2
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1090.9 952 60.3
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1090.5 992 58.4
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1089.3 954 59.7
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1088.6 956 59.6
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1088.6 954 59.6
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1088.6 949 59.0
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1088.2 944 60.9
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1088.2 969 59.4
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1084.7 998 57.6
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1084.3 948 60.0
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1084.3 975 59.1
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1083.2 985 58.4
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1083.2 946 60.3
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1082.4 965 59.3
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1082.0 932 60.3
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1081.2 940 59.3
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1078.2 944 59.3
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1078.2 963 57.9
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1076.6 955 59.5
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1076.2 963 58.4
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 6.2e-312 1073.5 933 60.5
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 6.7e-309 1063.9 960 57.8
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 8.8e-309 1063.5 954 59.1
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 1.5e-308 1062.8 968 57.7
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 2.6e-308 1062.0 956 58.8
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 3.3e-308 1061.6 918 60.9
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 4.4e-308 1061.2 962 59.1
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 9.7e-308 1060.1 954 58.5
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 2.2e-307 1058.9 956 59.2
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 2.8e-307 1058.5 1031 55.1
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 2.8e-307 1058.5 968 58.0
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 6.3e-307 1057.4 956 57.7
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 3.1e-306 1055.0 1031 54.8
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 3.1e-306 1055.0 965 57.5
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 4.1e-306 1054.7 951 57.9
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 5.3e-306 1054.3 967 57.7
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 7.0e-306 1053.9 1031 55.0
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 1.6e-305 1052.7 957 57.6
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 1.6e-305 1052.7 957 57.6
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 1.7e-304 1049.3 1045 54.0
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 2.2e-304 1048.9 998 55.9
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 8.5e-304 1047.0 960 57.5
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 1.5e-303 1046.2 954 58.2
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 3.2e-303 1045.0 958 57.9
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 4.2e-303 1044.6 960 57.7
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 7.2e-303 1043.9 954 57.5
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 1.6e-302 1042.7 958 57.8
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 6.1e-302 1040.8 956 57.4
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 1.5e-300 1036.2 925 57.7
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 3.3e-300 1035.0 902 58.9
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 8.2e-299 1030.4 1085 53.1
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 1.4e-298 1029.6 935 57.8
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 1.4e-298 1029.6 935 57.8
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 5.3e-298 1027.7 928 58.7
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 3.5e-297 1025.0 983 56.2
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 2.2e-296 1022.3 967 56.5
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 4.2e-295 1018.1 958 57.2
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 5.5e-295 1017.7 970 56.5
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 2.3e-293 1012.3 927 57.1
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 3.0e-293 1011.9 968 56.6
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 5.4e-290 1001.1 928 56.9
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 9.1e-290 1000.3 967 57.1
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.2e-289 1000.0 876 60.4
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 2.7e-289 998.8 1043 53.4
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 3.5e-289 998.4 991 53.7
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 4.7e-286 988.0 1074 52.4
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 2.3e-285 985.7 1065 52.5
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 2.8e-283 978.8 716 72.1
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 5.4e-282 974.5 912 57.0
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 2.0e-281 972.6 916 56.9
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 5.6e-279 964.5 869 58.7
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 3.7e-275 951.8 980 52.9
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 1.4e-274 949.9 963 53.8
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 2.4e-274 949.1 840 59.6
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 3.2e-274 948.7 959 54.4
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.1e-271 940.3 1074 49.6
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 2.5e-271 939.1 958 52.9
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 7.3e-271 937.6 880 57.0
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 4.7e-270 934.9 982 53.1
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.8e-269 932.9 982 52.5
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 2.9e-267 925.6 958 53.0
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 1.1e-266 923.7 841 58.0
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 4.1e-266 921.8 1192 47.1
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 5.4e-266 921.4 903 55.3
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 1.0e-240 837.4 983 50.4
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 4.8e-238 828.6 810 53.2
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 2.4e-237 826.2 788 57.0
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 1.3e-230 803.9 947 46.9
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 1.1e-229 800.8 777 54.7
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 4.5e-228 795.4 874 48.5
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 3.2e-218 762.7 654 61.9
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 2.2e-214 750.0 1120 40.1
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.8e-189 667.2 447 73.6
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 1.8e-181 640.6 673 52.5
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 5.0e-179 632.5 646 54.8
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 8.6e-171 605.1 740 48.0
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.2e-169 601.3 692 51.7
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.2e-160 569.3 432 67.6
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.8e-159 565.8 386 72.5
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 9.5e-154 548.5 423 67.1
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 5.4e-125 453.0 291 73.5
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 1.4e-120 438.3 553 48.1
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 5.8e-119 433.0 498 50.8
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 2.9e-118 430.6 295 68.8
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 9.3e-117 425.6 336 63.1
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.4e-111 407.1 711 38.7
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 7.9e-108 396.0 556 43.9
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.9e-106 391.3 261 71.3
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 4.8e-97 360.1 376 50.8
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.8e-91 341.7 461 42.5
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 4.5e-87 327.0 207 77.3
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.0e-55 221.9 148 68.2
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 7.2e-53 213.4 153 68.6
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 2.0e-50 205.3 210 48.1
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 3.3e-45 188.0 140 65.0
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 2.0e-39 168.7 132 59.8
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 6.4e-33 147.1 122 55.7
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.7e-30 139.0 107 64.5
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 3.9e-30 137.9 74 86.5
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 2.0e-26 125.6 111 54.1
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 8.6e-22 110.2 215 40.0
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 9.6e-21 106.7 76 64.5
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 1.4e-16 92.8 163 38.7
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 9.3e-16 90.1 66 59.1
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 6.0e-15 87.4 57 71.9
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 6.0e-15 87.4 82 56.1
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 5.6e-13 80.9 52 71.2
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 1.1e-11 76.6 97 46.4
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 5.3e-11 74.3 77 45.5
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 4.4e-10 71.2 59 57.6
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 1.7e-09 69.3 50 62.0
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 4.9e-09 67.8 62 54.8
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 1.4e-08 66.2 55 56.4
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 1.4e-08 66.2 55 56.4
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 7.1e-08 63.9 53 56.6
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 1.2e-07 63.2 33 75.8
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.7e-07 62.0 52 59.6
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 5.1e-06 57.8 71 47.9


User provided reference genes

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