Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 9.2e-242 839.7 402 100.0
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 1.1e-205 719.9 404 86.6
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 4.5e-204 714.5 405 86.2
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 3.8e-203 711.4 404 85.9
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 5.9e-164 581.3 445 68.3
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 2.2e-163 579.3 418 71.8
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 4.0e-144 515.4 398 64.6
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 6.4e-142 508.1 403 61.3
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 5.4e-141 505.0 402 60.9
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 9.2e-141 504.2 401 61.6
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 3.0e-139 499.2 401 61.3
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 6.6e-139 498.0 402 60.0
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 1.5e-138 496.9 391 61.9
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 6.2e-137 491.5 402 58.7
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 4.4e-135 485.3 393 62.1
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 1.2e-132 477.2 400 58.0
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 1.6e-132 476.9 392 58.4
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 2.0e-132 476.5 394 61.2
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 2.7e-132 476.1 396 57.1
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 1.3e-131 473.8 397 60.7
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 1.7e-131 473.4 397 60.7
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 2.3e-131 473.0 397 60.5
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 3.0e-131 472.6 395 61.5
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 3.9e-131 472.2 397 60.5
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 6.6e-131 471.5 376 62.5
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 5.6e-130 468.4 400 58.0
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 4.7e-129 465.3 401 57.4
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 4.7e-129 465.3 396 57.3
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 1.8e-128 463.4 390 61.0
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 3.1e-128 462.6 399 59.6
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 8.9e-128 461.1 402 58.5
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 1.2e-127 460.7 377 59.9
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 2.6e-127 459.5 404 59.2
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 2.6e-127 459.5 395 58.7
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 5.8e-127 458.4 392 56.6
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 1.3e-126 457.2 392 59.4
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 2.2e-126 456.4 391 59.1
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 2.9e-126 456.1 396 58.8
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 2.4e-125 453.0 397 58.7
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 1.2e-124 450.7 396 56.3
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 1.6e-124 450.3 399 58.1
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 4.6e-124 448.7 395 58.7
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 7.8e-124 448.0 438 52.5
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 2.3e-123 446.4 383 59.0
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 3.9e-123 445.7 401 55.9
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 8.6e-123 444.5 403 53.8
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 1.5e-122 443.7 390 56.2
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 1.9e-122 443.4 398 56.5
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 9.5e-122 441.0 397 56.9
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 2.8e-121 439.5 400 55.8
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 4.7e-121 438.7 400 56.8
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 6.2e-121 438.3 404 53.7
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 1.4e-120 437.2 395 55.9
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 1.4e-120 437.2 395 55.9
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 1.4e-120 437.2 395 58.2
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 1.4e-120 437.2 388 55.4
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 4.0e-120 435.6 396 56.6
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 5.2e-120 435.3 391 57.5
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 6.8e-120 434.9 398 55.5
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 3.4e-119 432.6 400 53.8
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 5.8e-119 431.8 385 58.4
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 5.8e-119 431.8 402 56.2
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 9.9e-119 431.0 390 56.9
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 9.9e-119 431.0 393 56.0
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 1.2e-116 424.1 403 54.8
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 3.9e-115 419.1 397 55.2
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 8.6e-115 417.9 402 55.0
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 1.5e-114 417.2 382 58.1
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 9.6e-114 414.5 376 56.6
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 9.6e-114 414.5 345 61.4
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 6.9e-112 408.3 407 51.8
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 3.4e-111 406.0 306 67.6
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 9.9e-111 404.4 327 58.7
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 2.2e-110 403.3 397 53.7
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 2.9e-110 402.9 413 52.3
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 6.4e-110 401.7 399 51.1
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 7.1e-109 398.3 373 52.0
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 1.0e-107 394.4 369 53.1
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 3.9e-107 392.5 404 52.0
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 6.6e-107 391.7 397 49.1
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 5.3e-104 382.1 400 51.8
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 5.4e-101 372.1 402 50.2
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 5.3e-96 355.5 422 47.9
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 1.7e-94 350.5 292 53.8
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 9.6e-90 334.7 409 45.5
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 2.1e-89 333.6 323 54.2
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 8.1e-89 331.6 290 59.0
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 1.1e-88 331.3 335 51.9
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 9.0e-88 328.2 327 50.8
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 4.5e-87 325.9 399 46.1
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 7.4e-82 308.5 236 62.7
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 2.1e-81 307.0 336 50.9
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 4.8e-81 305.8 393 44.3
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 1.4e-80 304.3 396 43.4
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.2e-77 293.1 181 75.7
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 3.2e-77 293.1 465 37.2
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 6.1e-76 288.9 316 48.7
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 5.3e-64 249.2 289 47.8
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 2.2e-62 243.8 281 48.8
Migut.O00731 Erythranthe guttata HOM05D005922 ORTHO05D006934 2.5e-61 240.4 250 50.4
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.5e-58 231.1 150 72.7
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 2.0e-58 230.7 154 68.2
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 1.8e-56 224.2 374 37.2
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 1.2e-55 221.5 272 43.4
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 1.6e-55 221.1 286 43.4
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 2.9e-54 216.9 127 76.4
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 2.3e-51 207.2 109 85.3
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 1.9e-45 187.6 132 65.2
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 1.8e-43 181.0 121 62.0
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 1.5e-42 177.9 102 71.6
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 2.2e-41 174.1 251 43.4
VMungo0251G2725 Vigna mungo HOM05D005922 ORTHO05D006934 1.4e-40 171.4 236 44.5
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 7.7e-39 165.6 93 80.6
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 7.7e-39 165.6 192 42.7
Manes.18G025338 Manihot esculenta HOM05D005922 ORTHO05D006934 2.1e-36 157.5 90 78.9
Oeu031680.1 Olea europaea HOM05D005922 ORTHO05D006934 2.8e-36 157.1 131 61.8
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 3.6e-28 130.2 111 58.6
Zm00001eb399130 Zea mays HOM05D005922 ORTHO05D006934 4.9e-25 119.8 84 57.1
arahy.Tifrunner.gnm1.ann1.B3UXS8 Arachis hypogaea HOM05D005922 ORTHO05D006934 5.0e-22 109.8 68 72.1
PRCOL_00005504 Prasinoderma coloniale HOM05D005922 ORTHO05D006934 5.0e-22 109.8 215 34.0
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 1.1e-19 102.1 102 47.1
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 1.1e-19 102.1 102 47.1
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 2.2e-17 94.4 106 47.2
CDE11G0599 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 4.9e-17 93.2 89 47.2
Haze_10820 Corylus avellana HOM05D005922 ORTHO05D006934 6.4e-17 92.8 78 61.5
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 2.4e-16 90.9 103 47.6
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 1.2e-15 88.6 50 74.0
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 2.5e-13 80.9 49 67.3
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 3.3e-13 80.5 49 65.3
SEGI_24854 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 1.2e-12 78.6 231 30.3
Manes.17G089020 Manihot esculenta HOM05D005922 ORTHO05D006934 3.4e-10 70.5 79 49.4
MCO06G046 Micromonas commoda HOM05D005922 ORTHO05D006934 7.1e-08 62.8 93 35.5
A02p14700 Brassica napus HOM05D005922 ORTHO05D006934 1.2e-07 62.0 181 28.7
BraA02t06537Z Brassica rapa HOM05D005922 ORTHO05D006934 1.2e-07 62.0 181 28.7


User provided reference genes

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