Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 9.1e-102 373.6 196 100.0
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 9.1e-102 373.6 196 100.0
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.2e-98 363.2 199 97.5
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.2e-98 363.2 199 97.5
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 5.2e-97 357.8 199 96.0
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 1.3e-92 343.2 189 94.7
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 1.7e-92 342.8 199 92.5
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 2.4e-86 322.4 195 88.2
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 2.4e-86 322.4 195 88.2
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 4.5e-85 318.2 186 89.2
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 4.5e-85 318.2 186 89.2
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 7.8e-85 317.4 195 86.7
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 3.3e-83 312.0 189 88.9
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 4.3e-83 311.6 189 88.9
Nitab4.5_0010333g0060 Nicotiana tabacum HOM05D007533 ORTHO05D009622 9.5e-83 310.5 171 95.3
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 4.7e-82 308.1 189 87.8
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 6.1e-82 307.8 199 84.4
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 6.1e-82 307.8 199 85.9
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 6.1e-82 307.8 199 85.9
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 4.0e-81 305.1 189 87.3
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 8.9e-81 303.9 189 87.3
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 1.2e-80 303.5 187 86.1
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 5.8e-80 301.2 189 86.8
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 5.8e-80 301.2 189 86.8
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 5.8e-80 301.2 189 86.8
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 9.8e-80 300.4 199 83.9
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 3.7e-79 298.5 199 82.4
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 8.3e-79 297.4 196 83.2
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 8.3e-79 297.4 189 86.2
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 2.4e-78 295.8 196 82.7
PGSC0003DMG400026520 Solanum tuberosum HOM05D007533 ORTHO05D009622 4.1e-78 295.0 155 98.7
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 5.4e-78 294.7 194 83.0
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 9.2e-78 293.9 195 83.1
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 1.2e-77 293.5 172 88.4
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 1.2e-77 293.5 172 88.4
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 2.7e-77 292.4 189 85.7
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 2.7e-77 292.4 189 85.7
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 2.7e-77 292.4 189 85.7
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 6.0e-77 291.2 199 81.9
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 6.0e-77 291.2 199 81.9
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 1.7e-76 289.7 195 82.6
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 2.3e-76 289.3 189 85.2
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 1.9e-75 286.2 178 86.0
Sopen00g001050 Solanum pennellii HOM05D007533 ORTHO05D009622 2.5e-75 285.8 150 98.0
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 5.8e-72 274.6 182 83.0
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 2.2e-71 272.7 171 86.0
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 8.3e-71 270.8 150 92.7
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 1.4e-70 270.0 164 89.0
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 3.2e-70 268.9 158 91.1
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 1.9e-67 259.6 144 94.4
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 4.3e-67 258.5 143 95.8
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 4.3e-67 258.5 143 95.8
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 2.3e-65 252.7 150 92.0
PGSC0003DMG400030942 Solanum tuberosum HOM05D007533 ORTHO05D009622 6.8e-65 251.1 143 90.2
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 1.5e-64 250.0 178 76.4
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 2.0e-64 249.6 131 98.5
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 2.2e-63 246.1 153 83.7
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 2.2e-63 246.1 158 83.5
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 3.7e-63 245.4 147 88.4
Nitab4.5_0012599g0080 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.1e-62 241.9 133 94.0
A04p09330 Brassica napus HOM05D007533 ORTHO05D009622 8.6e-60 234.2 185 73.0
BraSC48t46232Z Brassica rapa HOM05D007533 ORTHO05D009622 8.6e-60 234.2 185 73.0
BraSC48t46320Z Brassica rapa HOM05D007533 ORTHO05D009622 8.6e-60 234.2 185 73.0
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 7.3e-59 231.1 134 89.6
C01p34790 Brassica napus HOM05D007533 ORTHO05D009622 4.7e-58 228.4 185 70.8
Nitab4.5_0000172g1940 Nicotiana tabacum HOM05D007533 ORTHO05D009622 6.2e-58 228.0 187 72.7
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 8.1e-58 227.6 150 81.3
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 1.4e-57 226.9 145 83.4
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 2.0e-56 223.0 132 87.1
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 2.0e-56 223.0 132 87.1
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 8.4e-55 217.6 122 91.8
arahy.Tifrunner.gnm1.ann1.PN90EB Arachis hypogaea HOM05D007533 ORTHO05D009622 8.4e-55 217.6 122 91.8
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.9e-51 206.5 124 86.3
TPR.G21214 Trifolium pratense HOM05D007533 ORTHO05D009622 2.8e-50 202.6 119 86.6
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 4.7e-50 201.8 124 85.5
unitig_87.g27950 Utricularia gibba HOM05D007533 ORTHO05D009622 1.1e-49 200.7 148 73.0
SalBow1G6690 Salvia bowleyana HOM05D007533 ORTHO05D009622 9.6e-43 177.6 122 76.2
Lsat_1_v5_gn_5_43041 Lactuca sativa HOM05D007533 ORTHO05D009622 6.2e-42 174.9 115 85.2
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 3.8e-39 165.6 99 84.8
CAN.G649.12 Capsicum annuum HOM05D007533 ORTHO05D009622 8.4e-39 164.5 89 93.3
BolC1t03447H Brassica oleracea HOM05D007533 ORTHO05D009622 3.2e-38 162.5 99 88.9
HanXRQChr07g0189001 Helianthus annuus HOM05D007533 ORTHO05D009622 8.7e-36 154.5 97 89.7
BraSC54t46363Z Brassica rapa HOM05D007533 ORTHO05D009622 1.8e-33 146.7 86 93.0
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 4.0e-33 145.6 89 86.5
Nitab4.5_0010333g0120 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.0e-33 145.6 79 93.7
Nitab4.5_0010333g0150 Nicotiana tabacum HOM05D007533 ORTHO05D009622 7.6e-32 141.4 88 89.8
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 1.4e-25 120.6 76 80.3
TPR.G39970 Trifolium pratense HOM05D007533 ORTHO05D009622 1.8e-25 120.2 75 90.7
C03p57120 Brassica napus HOM05D007533 ORTHO05D009622 4.5e-24 115.5 91 69.2
BolC3t17989H Brassica oleracea HOM05D007533 ORTHO05D009622 4.5e-24 115.5 91 69.2
HanXRQChr17g0567331 Helianthus annuus HOM05D007533 ORTHO05D009622 8.4e-23 111.3 81 74.1
Nitab4.5_0000068g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.1e-22 110.9 68 89.7
Nitab4.5_0000034g0140 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.2e-22 109.0 61 90.2
Peaxi162Scf01098g00011 Petunia axillaris HOM05D007533 ORTHO05D009622 4.2e-22 109.0 64 89.1
Nitab4.5_0002253g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.6e-21 107.1 65 81.5
SHI19535 Sapria himalayana HOM05D000105 ORTHO05D000023 1.3e-20 104.0 76 71.1
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 1.8e-20 103.6 94 67.0
ATR0807G043 Amborella trichopoda HOM05D007533 ORTHO05D009622 3.0e-20 102.8 68 80.9
Nitab4.5_0000172g2020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.9e-20 102.4 83 71.1
Lsat_1_v5_gn_1_118900 Lactuca sativa HOM05D007533 ORTHO05D009622 1.3e-18 97.4 73 69.9
Gohir.D01G116666 Gossypium hirsutum HOM05D007533 ORTHO05D009622 2.4e-17 93.2 65 72.3
Solyc06g042990.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 9.0e-17 91.3 68 69.1
Oeu041867.1 Olea europaea HOM05D007533 ORTHO05D009622 4.2e-14 82.4 47 87.2
Nitab4.5_0000832g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.3e-11 72.8 45 80.0
Peaxi162Scf00673g00229 Petunia axillaris HOM05D011380 ORTHO05D016005 6.3e-10 68.6 43 93.0
CDE02G0940 Ceratophyllum demersum HOM05D000131 ORTHO05D000086 6.9e-09 65.1 39 79.5
Potri.007G062422 Populus trichocarpa HOM05D007533 ORTHO05D010378 2.6e-08 63.2 58 65.5
GSVIVG01010884001 Vitis vinifera HOM05D007533 ORTHO05D009622 3.2e-06 56.2 49 57.1


User provided reference genes

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