Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 8.8e-107 390.6 239 100.0
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 4.9e-65 251.9 228 76.8
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 2.2e-49 199.9 234 57.3
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 1.1e-48 197.6 233 57.5
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 1.1e-48 197.6 234 58.1
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 7.1e-48 194.9 231 60.6
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 3.5e-47 192.6 230 57.0
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 6.0e-47 191.8 176 67.6
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 4.3e-45 185.7 235 58.3
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 7.3e-45 184.9 233 59.7
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.6e-44 183.7 149 67.8
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 9.0e-43 177.9 228 50.4
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 9.0e-43 177.9 228 50.4
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.2e-42 177.6 228 50.4
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 2.4e-40 169.9 230 52.6
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 1.6e-39 167.2 234 46.2
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 2.1e-39 166.8 228 46.9
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 2.7e-39 166.4 230 45.7
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 7.8e-39 164.9 230 45.7
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.7e-38 163.7 231 45.0
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 3.9e-38 162.5 231 44.6
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 3.9e-38 162.5 230 45.2
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 8.7e-38 161.4 230 44.3
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 1.1e-37 161.0 228 46.1
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.5e-37 160.6 227 41.9
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 3.3e-37 159.5 227 41.9
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.3e-36 157.5 230 43.5
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.6e-36 157.1 176 49.4
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 2.8e-36 156.4 241 43.6
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 3.6e-36 156.0 228 45.6
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 6.2e-36 155.2 176 49.4
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 6.2e-36 155.2 225 44.0
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 8.1e-36 154.8 225 44.4
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.1e-35 154.5 228 44.7
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.1e-35 154.5 228 45.6
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 1.8e-35 153.7 178 49.4
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 2.4e-35 153.3 173 50.9
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 3.1e-35 152.9 175 50.9
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 2.0e-34 150.2 173 49.7
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 2.6e-34 149.8 235 43.0
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 3.4e-34 149.4 232 43.5
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 5.8e-34 148.7 231 42.4
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 7.6e-34 148.3 229 41.5
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 9.9e-34 147.9 182 49.5
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 1.3e-33 147.5 228 41.2
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 1.7e-33 147.1 228 42.5
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 3.8e-33 146.0 226 42.5
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 3.8e-33 146.0 228 42.5
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 4.9e-33 145.6 176 48.9
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 1.1e-32 144.4 228 41.7
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.1e-32 144.4 229 42.8
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 1.4e-32 144.1 162 50.6
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 1.4e-32 144.1 174 46.6
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.4e-32 144.1 174 50.0
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 2.4e-32 143.3 232 40.1
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 3.2e-32 142.9 175 50.3
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 4.2e-32 142.5 230 48.7
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 4.2e-32 142.5 233 42.5
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 4.2e-32 142.5 230 40.4
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 5.4e-32 142.1 225 38.2
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 7.1e-32 141.7 228 42.1
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 9.3e-32 141.4 229 40.6
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.2e-31 141.0 230 48.3
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 2.1e-31 140.2 172 48.8
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 2.1e-31 140.2 228 40.4
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 2.1e-31 140.2 228 47.8
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 2.7e-31 139.8 176 48.9
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 3.5e-31 139.4 177 46.9
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 3.5e-31 139.4 228 46.9
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 3.5e-31 139.4 236 41.5
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 3.5e-31 139.4 230 41.3
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 4.6e-31 139.0 230 39.6
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 2.3e-30 136.7 229 40.6
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.3e-30 136.7 230 40.4
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 3.0e-30 136.3 229 39.3
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 3.9e-30 136.0 227 41.0
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 6.7e-30 135.2 175 46.9
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 8.7e-30 134.8 166 46.4
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.5e-29 134.0 176 46.6
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 1.5e-29 134.0 226 38.5
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 1.9e-29 133.7 230 39.6
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 3.3e-29 132.9 171 46.8
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 3.3e-29 132.9 230 39.1
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 1.3e-28 131.0 172 46.5
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 1.3e-28 131.0 165 46.1
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 2.1e-28 130.2 173 45.7
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 3.7e-28 129.4 228 40.4
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 6.2e-28 128.6 230 37.4
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 8.1e-28 128.3 177 43.5
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 1.8e-27 127.1 228 38.2
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.4e-27 126.7 228 37.3
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.1e-27 126.3 228 37.3
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 3.1e-27 126.3 228 50.4
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 3.1e-27 126.3 228 37.7
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 4.0e-27 125.9 157 47.8
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 5.3e-27 125.6 176 44.3
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.3e-27 125.6 228 36.8
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 6.9e-27 125.2 228 36.8
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.5e-26 124.0 228 36.4
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 2.6e-26 123.2 229 40.2
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 3.4e-26 122.9 230 41.3
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.5e-26 122.5 228 36.4
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.5e-26 122.5 228 36.4
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.3e-25 120.9 228 36.0
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 1.7e-25 120.6 228 36.0
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.2e-25 120.2 228 36.4
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 3.8e-25 119.4 164 43.3
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 4.9e-25 119.0 228 40.8
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 8.4e-25 118.2 127 48.8
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 8.4e-25 118.2 228 35.1
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 1.1e-24 117.9 228 36.4
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 1.4e-24 117.5 228 36.4
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 1.4e-24 117.5 174 42.5
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 2.4e-24 116.7 173 41.6
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 4.2e-24 115.9 228 36.0
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 7.1e-24 115.2 141 46.8
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 7.1e-24 115.2 228 41.7
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 1.2e-23 114.4 147 45.6
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 1.2e-23 114.4 147 45.6
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 1.2e-23 114.4 147 45.6
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 1.2e-23 114.4 147 45.6
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 2.7e-23 113.2 147 44.9
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 2.7e-23 113.2 227 41.9
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 3.5e-23 112.8 165 41.8
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 4.6e-23 112.5 318 29.9
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.0e-22 111.3 168 42.9
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 1.3e-22 110.9 137 46.0
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 2.3e-22 110.2 160 41.9
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 1.1e-21 107.8 172 39.0
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 9.6e-21 104.8 212 37.7
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 6.2e-20 102.1 236 33.9
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 3.1e-19 99.8 154 40.3
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 2.6e-18 96.7 229 32.8
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 7.6e-18 95.1 167 35.3
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 1.0e-17 94.7 138 41.3
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 3.8e-17 92.8 151 38.4
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 6.5e-17 92.0 173 36.4
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 9.3e-16 88.2 190 35.3
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 5.1e-14 82.4 158 35.4
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 1.5e-13 80.9 152 36.2
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 5.7e-13 79.0 176 30.7
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 9.7e-13 78.2 226 28.8
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 2.8e-12 76.6 169 33.1
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 6.9e-11 72.0 68 54.4
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 2.0e-10 70.5 69 52.2
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 2.3e-06 57.0 161 29.8


User provided reference genes

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