Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 2.2e-174 615.5 314 100.0
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 2.2e-174 615.5 314 100.0
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 2.2e-174 615.5 314 100.0
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 2.2e-174 615.5 314 100.0
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 3.2e-173 611.7 314 99.4
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 1.4e-157 559.7 326 89.9
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 5.9e-143 511.1 316 84.2
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 5.1e-139 498.0 316 81.0
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 1.1e-136 490.3 325 80.0
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 1.2e-135 486.9 316 78.5
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 5.9e-135 484.6 326 78.5
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 5.9e-135 484.6 326 78.5
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 5.9e-135 484.6 326 78.5
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 5.9e-135 484.6 326 78.5
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 2.1e-132 476.1 316 78.2
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 2.1e-132 476.1 316 78.2
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.7e-132 475.7 320 78.4
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.7e-132 475.7 320 78.4
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 7.0e-128 461.1 316 75.0
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 2.9e-126 455.7 322 72.4
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 3.8e-126 455.3 318 74.5
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 4.2e-125 451.8 322 73.0
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 4.2e-125 451.8 322 73.0
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 8.0e-124 447.6 326 73.9
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 1.7e-121 439.9 327 70.0
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 1.7e-121 439.9 327 70.0
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 1.7e-121 439.9 327 70.0
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 1.7e-121 439.9 327 70.0
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 2.2e-121 439.5 317 72.2
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 4.8e-121 438.3 327 70.0
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 4.8e-121 438.3 327 70.0
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 4.8e-121 438.3 327 70.0
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 4.8e-121 438.3 327 70.0
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 4.8e-121 438.3 327 70.0
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 6.3e-121 438.0 327 70.0
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 6.3e-121 438.0 327 70.0
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 6.3e-121 438.0 327 70.0
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 3.1e-120 435.6 325 69.8
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 4.1e-120 435.3 322 70.5
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 2.2e-118 429.5 326 69.0
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 1.0e-115 420.6 310 71.0
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 6.3e-113 411.4 270 80.4
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.1e-112 409.1 271 77.1
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 5.0e-110 401.7 320 68.4
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.2e-109 399.1 283 75.3
HanXRQChr09g0258531 Helianthus annuus HOM05D005034 ORTHO05D006234 3.6e-108 395.6 326 68.1
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 6.1e-108 394.8 314 68.5
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 8.8e-107 391.0 293 70.0
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 3.4e-106 389.0 235 85.1
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 7.5e-106 387.9 271 77.1
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 2.2e-105 386.3 302 67.9
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 1.8e-99 366.7 270 71.1
CAN.G939.6 Capsicum annuum HOM05D005034 ORTHO05D006234 1.7e-97 360.1 177 100.0
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 7.8e-95 351.3 325 61.8
PGSC0003DMG400029012 Solanum tuberosum HOM05D005034 ORTHO05D006234 8.0e-92 341.3 173 96.0
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 7.5e-90 334.7 269 64.7
CAN.G1431.1 Capsicum annuum HOM05D005034 ORTHO05D006234 1.1e-88 330.9 163 100.0
CAN.G424.20 Capsicum annuum HOM05D005034 ORTHO05D006234 1.1e-88 330.9 163 100.0
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 9.2e-88 327.8 179 97.8
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 3.0e-86 322.8 264 67.4
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 1.2e-84 317.4 248 66.5
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 5.8e-82 308.5 277 59.9
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 7.3e-77 291.6 261 59.0
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 7.3e-77 291.6 261 59.0
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 7.3e-77 291.6 261 59.0
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 7.3e-77 291.6 261 59.0
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 7.3e-77 291.6 261 59.0
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 4.4e-74 282.3 220 68.2
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 1.0e-70 271.2 243 61.7
Solyc11g021210.2 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.3e-70 270.8 185 79.5
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 6.6e-70 268.5 187 80.7
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 9.6e-69 264.6 307 49.2
RcHm_v2.0_Chr5g0017241 Rosa chinensis HOM05D005034 ORTHO05D006234 3.6e-68 262.7 175 75.4
Eucgr.C03526 Eucalyptus grandis HOM05D005034 ORTHO05D006234 2.7e-63 246.5 230 59.1
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 1.2e-58 231.1 208 63.9
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 2.0e-58 230.3 178 70.2
RcHm_v2.0_CPg0502821 Rosa chinensis HOM05D005034 ORTHO05D006234 8.4e-57 224.9 147 81.0
Nitab4.5_0000100g0130 Nicotiana tabacum HOM05D005034 ORTHO05D006234 6.0e-55 218.8 183 70.5
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 2.3e-54 216.9 186 67.7
MCO12G235 Micromonas commoda HOM05D005034 ORTHO05D006234 7.4e-53 211.8 277 40.8
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 7.4e-53 211.8 112 87.5
Gohir.D08G145250 Gossypium hirsutum HOM05D005034 ORTHO05D006234 7.6e-50 201.8 104 88.5
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 3.8e-49 199.5 182 60.4
Phvul.002G050101 Phaseolus vulgaris HOM05D005034 ORTHO05D006234 6.4e-49 198.7 127 72.4
PRCOL_00005002 Prasinoderma coloniale HOM05D005034 ORTHO05D006234 8.4e-49 198.4 294 39.8
CARHR178430 Cardamine hirsuta HOM05D005034 ORTHO05D006234 3.5e-47 193.0 120 74.2
Prupe.5G061000 Prunus persica HOM05D005034 ORTHO05D006234 4.6e-47 192.6 170 61.2
Gorai.009G333000 Gossypium raimondii HOM05D005034 ORTHO05D006234 6.7e-46 188.7 103 83.5
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 1.1e-45 188.0 161 63.4
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.1e-45 188.0 261 44.8
Gohir.D05G311850 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.9e-45 187.2 103 83.5
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 3.3e-45 186.4 187 57.2
HanXRQChr03g0073081 Helianthus annuus HOM05D005034 ORTHO05D006234 4.3e-45 186.0 181 60.8
HanXRQChr08g0212001 Helianthus annuus HOM05D005034 ORTHO05D006234 4.3e-45 186.0 128 77.3
Hma1.2p1_0201F.1_g086105 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 4.3e-45 186.0 90 94.4
Hma1.2p1_0201F.1_g086120 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 4.3e-45 186.0 90 94.4
BolSC45t60912H Brassica oleracea HOM05D005034 ORTHO05D006234 1.5e-42 177.6 142 65.5
Nn1g08156 Nelumbo nucifera HOM05D005034 ORTHO05D006234 1.0e-41 174.9 121 72.7
SMO086G0050 Selaginella moellendorffii HOM05D005034 ORTHO05D006234 4.2e-40 169.5 272 42.6
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.2e-39 167.9 199 49.2
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 4.6e-39 166.0 199 49.2
Hma1.2p1_0665F.1_g199050 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 7.9e-39 165.2 91 92.3
CAN.G1045.14 Capsicum annuum HOM05D005034 ORTHO05D006234 2.8e-36 156.8 81 98.8
HanXRQChr01g0020081 Helianthus annuus HOM05D005034 ORTHO05D006234 2.8e-36 156.8 79 87.3
Gorai.003G181700 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.1e-35 154.8 76 88.2
Medtr4g006180 Medicago truncatula HOM05D005034 ORTHO05D006234 1.4e-35 154.5 151 55.6
Gohir.D03G171050 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.4e-34 149.8 76 86.8
Manes.18G138354 Manihot esculenta HOM05D005034 ORTHO05D006234 4.5e-34 149.4 94 80.9
Migut.L00236 Erythranthe guttata HOM05D005034 ORTHO05D006234 7.6e-34 148.7 77 85.7
Hund25564 Selenicereus undatus HOM05D005034 ORTHO05D006234 3.8e-33 146.4 249 44.6
Migut.L00237 Erythranthe guttata HOM05D005034 ORTHO05D006234 8.5e-33 145.2 77 83.1
HanXRQChr00c0504g0575291 Helianthus annuus HOM05D005034 ORTHO05D006234 8.5e-33 145.2 115 73.0
Migut.L00238 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.6e-31 141.0 70 88.6
HanXRQChr00c0495g0575141 Helianthus annuus HOM05D005034 ORTHO05D006234 3.6e-31 139.8 131 63.4
BolC2t10593H Brassica oleracea HOM05D005034 ORTHO05D006234 4.6e-31 139.4 110 69.1
Eucgr.J01554 Eucalyptus grandis HOM05D005034 ORTHO05D006234 5.1e-30 136.0 69 87.0
Nitab4.5_0001130g0150 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.5e-29 134.4 67 94.0
HanXRQChr08g0211991 Helianthus annuus HOM05D005034 ORTHO05D006234 2.8e-28 130.2 68 86.8
Lsat_1_v5_gn_5_11321 Lactuca sativa HOM05D005034 ORTHO05D006234 4.8e-28 129.4 83 72.3
Nitab4.5_0001130g0160 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.8e-27 127.5 79 87.3
Gohir.D10G247550 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.4e-26 123.2 69 82.6
BolC6t36207H Brassica oleracea HOM05D005034 ORTHO05D006234 5.9e-26 122.5 100 66.0
Gorai.011G286000 Gossypium raimondii HOM05D005034 ORTHO05D006234 5.0e-25 119.4 69 79.7
Lalb_Chr18g0049451 Lupinus albus HOM05D005034 ORTHO05D006234 3.6e-23 113.2 100 62.0
Medtr0002s0180 Medicago truncatula HOM05D005034 ORTHO05D006234 6.1e-23 112.5 324 27.2
Nitab4.5_0001446g0070 Nicotiana tabacum HOM05D005034 ORTHO05D006234 8.8e-22 108.6 62 93.5
Lalb_Chr05g0227101 Lupinus albus HOM05D005034 ORTHO05D006234 1.1e-21 108.2 66 84.8
HanXRQChr01g0020091 Helianthus annuus HOM05D005034 ORTHO05D006234 3.3e-21 106.7 90 68.9
CAN.G262.6 Capsicum annuum HOM05D005034 ORTHO05D006234 2.2e-20 104.0 62 87.1
MBI19_g35567_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 6.3e-20 102.4 50 90.0
Hma1.2p1_0382F.1_g140190 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.1e-19 101.7 53 90.6
HanXRQChr00c0718g0576991 Helianthus annuus HOM05D005034 ORTHO05D006234 3.1e-19 100.1 53 83.0
Eucgr.K01772 Eucalyptus grandis HOM05D005034 ORTHO05D006234 9.1e-19 98.6 76 68.4
Psat0s8829g0120 Pisum sativum HOM05D005034 ORTHO05D006234 3.8e-17 93.2 44 86.4
Solyc02g150101.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 7.2e-16 89.0 56 82.1
Solyc00g500194.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.1e-13 81.6 41 97.6
Solyc02g011730.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 3.3e-13 80.1 60 68.3
Nitab4.5_0007979g0110 Nicotiana tabacum HOM05D005034 ORTHO05D006234 4.8e-12 76.3 89 58.4
arahy.Tifrunner.gnm1.ann1.5N7P5J Arachis hypogaea HOM05D005034 ORTHO05D006234 1.8e-11 74.3 49 77.6
CARHR178440 Cardamine hirsuta HOM05D005034 ORTHO05D006234 2.6e-10 70.5 42 88.1
Medtr4g050940 Medicago truncatula HOM05D001243 ORTHO05D000843 4.5e-10 69.7 49 69.4
arahy.Tifrunner.gnm1.ann1.A5A200 Arachis hypogaea HOM05D005034 ORTHO05D006234 3.8e-09 66.6 94 51.1
Nitab4.5_0007979g0090 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.5e-08 64.7 108 42.6
Psat5g168080 Pisum sativum HOM05D005034 ORTHO05D006234 8.8e-06 55.5 23 91.3


User provided reference genes

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