Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1526.6 Capsicum annuum HOM05D007371 ORTHO05D009319 1.6e-89 332.8 177 100.0
CAN.G278.2 Capsicum annuum HOM05D007371 ORTHO05D009319 1.6e-89 332.8 177 100.0
CAN.G939.5 Capsicum annuum HOM05D007371 ORTHO05D009319 1.6e-89 332.8 177 100.0
CAN.G965.5 Capsicum annuum HOM05D007371 ORTHO05D009319 1.1e-85 320.1 177 96.0
DCAR_032539 Daucus carota HOM05D007371 ORTHO05D009319 6.6e-83 310.8 177 91.5
Solyc03g013600.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.1e-82 310.1 177 94.4
Migut.D01251 Erythranthe guttata HOM05D007371 ORTHO05D009319 4.7e-81 304.7 177 90.4
SalBow1G7973 Salvia bowleyana HOM05D007371 ORTHO05D009319 1.0e-80 303.5 177 89.3
Nn064s42209 Nelumbo nucifera HOM05D007371 ORTHO05D009319 2.0e-79 299.3 177 89.3
Peaxi162Scf00338g00628 Petunia axillaris HOM05D007371 ORTHO05D009319 2.6e-79 298.9 177 91.5
Gohir.1Z049431 Gossypium hirsutum HOM05D007371 ORTHO05D009319 9.8e-79 297.0 177 88.1
Gohir.1Z049679 Gossypium hirsutum HOM05D007371 ORTHO05D009319 9.8e-79 297.0 177 88.1
Gohir.A02G134600 Gossypium hirsutum HOM05D007371 ORTHO05D009319 9.8e-79 297.0 177 88.1
Lj2P1238T112 Lonicera japonica HOM05D007371 ORTHO05D009319 2.2e-78 295.8 177 88.7
Lju5009P0T52 Lonicera japonica HOM05D007371 ORTHO05D009319 2.2e-78 295.8 177 88.7
PGR111G0032 Punica granatum HOM05D007371 ORTHO05D009319 3.7e-78 295.0 177 88.1
Nn3g20215 Nelumbo nucifera HOM05D007371 ORTHO05D009319 6.3e-78 294.3 177 88.1
RcHm_v2.0_Chr5g0017201 Rosa chinensis HOM05D007371 ORTHO05D009319 1.8e-77 292.7 177 87.6
RcHm_v2.0_CPg0502761 Rosa chinensis HOM05D007371 ORTHO05D009319 1.8e-77 292.7 177 87.6
Gohir.A09G046246 Gossypium hirsutum HOM05D007371 ORTHO05D009319 2.4e-77 292.4 177 87.0
HanXRQChr00c0289g0573141 Helianthus annuus HOM05D007371 ORTHO05D009319 4.1e-77 291.6 177 87.6
HanXRQChr02g0059721 Helianthus annuus HOM05D007371 ORTHO05D009319 4.1e-77 291.6 177 87.6
HanXRQChr09g0258501 Helianthus annuus HOM05D007371 ORTHO05D009319 4.1e-77 291.6 177 87.6
HanXRQChr15g0465431 Helianthus annuus HOM05D007371 ORTHO05D009319 4.1e-77 291.6 177 87.6
HanXRQChr15g0465461 Helianthus annuus HOM05D007371 ORTHO05D009319 4.1e-77 291.6 177 87.6
HanXRQChr17g0569751 Helianthus annuus HOM05D007371 ORTHO05D009319 4.1e-77 291.6 177 87.6
HanXRQCPg0580341 Helianthus annuus HOM05D007371 ORTHO05D009319 4.1e-77 291.6 177 87.6
Lj9P89T22 Lonicera japonica HOM05D007371 ORTHO05D009319 5.4e-77 291.2 177 87.0
Solyc02g011770.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 9.2e-77 290.4 177 88.7
RcHm_v2.0_Chr5g0043021 Rosa chinensis HOM05D007371 ORTHO05D009319 2.0e-76 289.3 177 86.4
Lalb_Chr07g0191781 Lupinus albus HOM05D007371 ORTHO05D009319 1.7e-75 286.2 177 85.3
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 1.1e-74 283.5 176 84.7
TAR625G0296 Trochodendron aralioides HOM05D007371 ORTHO05D009319 1.1e-74 283.5 177 84.7
PSO548G0046 Papaver somniferum HOM05D007371 ORTHO05D009319 1.5e-74 283.1 177 83.6
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 4.3e-74 281.6 176 84.1
Medtr6g042220 Medicago truncatula HOM05D007371 ORTHO05D009319 7.3e-74 280.8 177 84.2
C09p24650 Brassica napus HOM05D007371 ORTHO05D009319 4.7e-73 278.1 177 83.1
C09p40180 Brassica napus HOM05D007371 ORTHO05D009319 4.7e-73 278.1 177 83.1
BolC2t10597H Brassica oleracea HOM05D007371 ORTHO05D009319 4.7e-73 278.1 177 83.1
BolSC29t60507H Brassica oleracea HOM05D007371 ORTHO05D009319 4.7e-73 278.1 177 83.1
BolSC29t60622H Brassica oleracea HOM05D007371 ORTHO05D009319 4.7e-73 278.1 177 83.1
BolSC37t60794H Brassica oleracea HOM05D007371 ORTHO05D009319 4.7e-73 278.1 177 83.1
BolSC47t61064H Brassica oleracea HOM05D007371 ORTHO05D009319 4.7e-73 278.1 177 83.1
BraA10t43431Z Brassica rapa HOM05D007371 ORTHO05D009319 4.7e-73 278.1 177 83.1
BraSC103t45430Z Brassica rapa HOM05D007371 ORTHO05D009319 4.7e-73 278.1 177 83.1
BraSC179t45773Z Brassica rapa HOM05D007371 ORTHO05D009319 4.7e-73 278.1 177 83.1
BraSC59t46552Z Brassica rapa HOM05D007371 ORTHO05D009319 4.7e-73 278.1 177 83.1
ATCG01080 Arabidopsis thaliana HOM05D007371 ORTHO05D009319 3.1e-72 275.4 177 81.4
CARHR282450 Cardamine hirsuta HOM05D007371 ORTHO05D009319 2.0e-71 272.7 177 81.4
AL9U11956 Arabidopsis lyrata HOM05D007371 ORTHO05D009319 4.4e-71 271.6 177 80.8
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 1.7e-70 269.6 176 83.0
BolC9t56922H Brassica oleracea HOM05D007371 ORTHO05D009319 1.2e-68 263.5 177 78.5
HanXRQChr17g0569721 Helianthus annuus HOM05D007371 ORTHO05D009319 2.7e-68 262.3 162 85.8
Gohir.D04G175100 Gossypium hirsutum HOM05D007371 ORTHO05D009319 4.6e-68 261.5 153 86.9
CAN.G256.22 Capsicum annuum HOM05D007371 ORTHO05D009319 4.3e-66 255.0 141 95.0
Nn1g08633 Nelumbo nucifera HOM05D007371 ORTHO05D009319 5.6e-66 254.6 162 82.1
Solyc07g026910.3 Solanum lycopersicum HOM05D007371 ORTHO05D009319 5.8e-63 244.6 137 94.9
Gohir.D12G089301 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.9e-61 239.6 152 83.6
Gohir.D06G133700 Gossypium hirsutum HOM05D007371 ORTHO05D009319 4.9e-54 214.9 161 74.5
CAN.G262.7 Capsicum annuum HOM05D007371 ORTHO05D009319 8.6e-51 204.1 119 90.8
Glyma.19G081000 Glycine max HOM05D007371 ORTHO05D009319 3.6e-49 198.7 150 74.0
BraSC143t45659Z Brassica rapa HOM05D007371 ORTHO05D009319 1.3e-46 190.3 124 80.6
Potri.013G075100 Populus trichocarpa HOM05D007371 ORTHO05D009319 2.7e-44 182.6 116 79.3
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 1.1e-42 177.2 117 76.9
Nn031s41614 Nelumbo nucifera HOM05D007371 ORTHO05D009319 1.1e-42 177.2 99 87.9
HanXRQChr00c0336g0573671 Helianthus annuus HOM05D007371 ORTHO05D009319 7.3e-42 174.5 99 86.9
BolSC45t60908H Brassica oleracea HOM05D007371 ORTHO05D009319 4.0e-40 168.7 108 81.5
Nitab4.5_0007979g0070 Nicotiana tabacum HOM05D007371 ORTHO05D009319 6.9e-40 167.9 177 61.6
Thecc.08G131100 Theobroma cacao HOM05D007371 ORTHO05D009319 6.9e-40 167.9 99 83.8
BolSC29t60547H Brassica oleracea HOM05D007371 ORTHO05D009319 1.5e-39 166.8 107 81.3
BolSC35t60691H Brassica oleracea HOM05D007371 ORTHO05D009319 1.5e-39 166.8 107 81.3
BolSC46t60957H Brassica oleracea HOM05D007371 ORTHO05D009319 1.5e-39 166.8 107 81.3
BolSC56t61236H Brassica oleracea HOM05D007371 ORTHO05D009319 1.5e-39 166.8 107 81.3
Gohir.A03G146201 Gossypium hirsutum HOM05D007371 ORTHO05D009319 5.8e-39 164.9 163 57.1
BolSC35t60705H Brassica oleracea HOM05D007371 ORTHO05D009319 4.2e-37 158.7 99 80.8
Gorai.013G109900 Gossypium raimondii HOM05D007371 ORTHO05D009319 3.0e-35 152.5 98 79.6
BolSC49t61144H Brassica oleracea HOM05D007371 ORTHO05D009319 8.7e-35 151.0 99 80.8
BraSC25t45911Z Brassica rapa HOM05D007371 ORTHO05D009319 1.1e-34 150.6 93 80.6
C02p24280 Brassica napus HOM05D007371 ORTHO05D009319 4.3e-34 148.7 128 62.5
C09p40330 Brassica napus HOM05D007371 ORTHO05D009319 3.6e-33 145.6 100 78.0
Gorai.005G189900 Gossypium raimondii HOM05D007371 ORTHO05D009319 4.8e-33 145.2 94 74.5
Hma1.2p1_0656F.1_g196806 Hydrangea macrophylla HOM05D007371 ORTHO05D009319 6.2e-33 144.8 84 92.9
HanXRQChr01g0000251 Helianthus annuus HOM05D007371 ORTHO05D009319 1.1e-32 144.1 153 61.4
Solyc11g021217.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.8e-32 143.3 90 87.8
HanXRQChr05g0152451 Helianthus annuus HOM05D007371 ORTHO05D009319 7.6e-31 137.9 74 85.1
HanXRQChr08g0211951 Helianthus annuus HOM05D007371 ORTHO05D009319 7.6e-31 137.9 74 85.1
BraSC138t45534Z Brassica rapa HOM05D007371 ORTHO05D009319 2.2e-30 136.3 109 70.6
Gohir.D02G169550 Gossypium hirsutum HOM05D007371 ORTHO05D009319 2.2e-30 136.3 96 69.8
BolC2t10612H Brassica oleracea HOM05D007371 ORTHO05D009319 1.4e-29 133.7 84 85.7
Gohir.D07G194033 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.8e-27 126.7 76 85.5
arahy.Tifrunner.gnm1.ann1.5E4H9C Arachis hypogaea HOM05D007371 ORTHO05D009319 1.9e-26 123.2 84 79.8
BraSC58t46462Z Brassica rapa HOM05D007371 ORTHO05D009319 1.1e-24 117.5 75 73.3
HanXRQChr00c0703g0576941 Helianthus annuus HOM05D007371 ORTHO05D009319 1.4e-24 117.1 75 88.0
arahy.Tifrunner.gnm1.ann1.UDKX9E Arachis hypogaea HOM05D000890 ORTHO05D000697 6.9e-24 114.8 67 77.6
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 4.9e-22 108.6 74 78.4
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 4.9e-22 108.6 74 78.4
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 4.9e-22 108.6 74 78.4
RcHm_v2.0_Chr4g0438011 Rosa chinensis HOM05D007371 ORTHO05D009319 4.9e-22 108.6 66 86.4
SMO086G0016 Selaginella moellendorffii HOM05D007371 ORTHO05D009319 1.4e-21 107.1 176 45.5
HanXRQChr02g0037971 Helianthus annuus HOM05D007371 ORTHO05D009319 1.8e-19 100.1 83 71.1
Lalb_Chr09g0335451 Lupinus albus HOM05D007371 ORTHO05D009319 1.5e-18 97.1 65 78.5
HanXRQChr11g0323761 Helianthus annuus HOM05D007371 ORTHO05D009319 1.8e-16 90.1 81 70.4
BolC7t43856H Brassica oleracea HOM05D007371 ORTHO05D009319 4.1e-16 89.0 56 78.6
Aa31LG5G21710 Aethionema arabicum HOM05D007371 ORTHO05D009319 7.6e-15 84.7 85 64.7
Mapoly0048s0040 Marchantia polymorpha HOM05D007371 ORTHO05D009319 2.2e-14 83.2 99 47.5
Lsat_1_v5_gn_6_54121 Lactuca sativa HOM05D007371 ORTHO05D009319 1.2e-12 77.4 48 85.4
HanXRQChr02g0038001 Helianthus annuus HOM05D007371 ORTHO05D009319 5.1e-11 72.0 61 68.9
CsaV3_UNG210150 Cucumis sativus L. HOM05D001200 ORTHO05D009713 3.3e-10 69.3 45 77.8
Haze_02268 Corylus avellana HOM05D007371 ORTHO05D009319 2.8e-09 66.2 42 78.6
Lalb_Chr11g0071331 Lupinus albus HOM05D007371 ORTHO05D009319 2.8e-09 66.2 70 55.7
Hund24330 Selenicereus undatus HOM05D007371 ORTHO05D009319 1.0e-06 57.8 41 65.9


User provided reference genes

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