Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 0.0e+00 2353.6 1224 100.0
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 2033.1 1228 87.1
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 2012.3 1228 85.7
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1993.8 1228 85.3
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1943.7 1229 81.9
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1914.4 1247 80.1
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 0.0e+00 1792.3 1242 76.1
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1405.6 1259 60.0
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1374.4 1259 59.0
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1302.3 1257 56.0
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1298.5 1278 55.2
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1286.2 1236 55.6
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1279.6 1271 53.9
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 0.0e+00 1278.1 1253 55.7
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1253.4 1271 53.3
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1246.5 1257 53.8
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 0.0e+00 1235.3 1214 55.0
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1233.8 1270 52.8
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1215.7 1265 52.7
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1209.9 1262 52.5
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1204.1 1232 52.2
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1203.0 1267 50.7
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 0.0e+00 1202.6 1243 51.5
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1200.3 1270 51.4
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1199.1 1270 52.0
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1196.4 1233 53.1
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1192.9 1262 52.0
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1189.1 1258 51.2
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 0.0e+00 1186.0 1238 54.0
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 0.0e+00 1183.3 1300 51.5
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1178.7 1260 51.0
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1169.8 1258 50.5
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1163.3 1237 52.4
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 0.0e+00 1160.2 1242 50.8
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1156.7 1255 49.9
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1155.6 1272 50.9
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1155.2 1278 50.6
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1154.4 1257 50.4
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1152.5 1270 50.9
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 0.0e+00 1144.4 1118 55.7
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1143.3 1253 49.9
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1142.9 1253 49.8
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 0.0e+00 1140.9 1240 50.3
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1139.0 1253 49.9
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1136.7 1251 50.3
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1131.7 1223 50.0
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1126.3 1266 49.5
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1121.3 1271 49.6
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 0.0e+00 1120.9 1255 50.5
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1120.1 1186 51.2
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 0.0e+00 1116.7 1266 48.7
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1116.3 1256 49.5
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1113.2 1077 55.2
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1113.2 1272 48.3
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1112.8 1263 49.6
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 0.0e+00 1107.0 1242 49.2
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 1105.5 1248 49.4
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1099.3 1262 48.1
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1097.8 1264 48.3
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1097.0 1235 49.5
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1090.9 1275 48.4
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1088.6 1271 48.4
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1086.6 1259 48.8
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1086.6 1255 48.7
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 0.0e+00 1086.2 1188 49.2
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1084.3 1258 47.8
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1082.4 1240 48.2
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 0.0e+00 1081.6 1012 57.7
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1080.5 1249 48.5
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1077.8 1258 48.1
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 8.4e-312 1074.7 1247 47.1
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 8.4e-312 1073.9 1244 47.9
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 2.5e-311 1072.4 1262 47.8
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 1.4e-309 1066.6 1245 48.4
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 7.2e-306 1054.3 1249 46.9
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 1.5e-303 1046.6 1232 48.1
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 4.1e-301 1038.5 1251 48.0
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 8.6e-299 1030.8 1243 47.5
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 1.4e-296 1023.5 1095 51.7
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 5.2e-296 1021.5 1235 47.4
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 5.0e-291 1005.0 1184 48.1
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 5.6e-290 1001.5 1260 46.1
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 1.2e-289 1000.3 1256 46.0
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 5.8e-287 991.5 1264 45.6
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 2.5e-282 976.1 899 56.4
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 1.7e-278 963.4 1254 45.8
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 8.3e-278 961.1 939 55.0
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 6.4e-270 934.9 1239 43.8
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 6.6e-267 924.9 880 56.1
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 5.8e-263 911.8 1203 43.5
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 3.4e-255 885.9 1050 46.9
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 1.0e-243 847.8 1265 41.2
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 1.1e-237 827.8 985 47.8
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 6.3e-233 812.0 902 51.4
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 1.0e-227 794.7 859 51.7
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 5.3e-224 782.3 1208 39.8
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 1.7e-214 750.7 933 45.4
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 9.7e-210 734.9 983 44.4
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 5.5e-205 719.2 1107 39.1
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 8.1e-164 582.4 572 53.5
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 1.5e-162 578.2 881 38.9
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 1.7e-161 574.7 772 42.2
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 1.6e-156 558.1 1116 33.4
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 2.9e-153 547.4 826 38.7
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 2.4e-139 501.1 787 37.2
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 7.9e-135 486.1 428 60.0
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 3.1e-131 474.2 638 41.4
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 5.9e-114 416.8 364 62.9
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 4.8e-108 397.1 600 39.2
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 7.7e-98 363.2 349 56.4
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 8.5e-97 359.8 338 57.4
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 2.7e-95 354.8 338 57.1
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 9.8e-85 319.7 236 65.7
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 5.5e-80 303.9 459 41.0
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.4e-75 289.3 649 31.3
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 7.5e-69 266.9 452 33.4
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 1.7e-65 255.8 381 39.9
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 8.0e-63 246.9 492 32.1
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 8.6e-57 226.9 396 35.4
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 5.8e-53 214.2 336 35.4
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 2.3e-49 202.2 285 41.4
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 1.2e-47 196.4 380 35.0
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.1e-47 195.7 294 38.4
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 1.8e-30 139.4 325 32.9
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 2.6e-29 135.6 168 43.5
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 9.3e-19 100.5 355 27.3
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 1.6e-18 99.8 203 34.0
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 1.3e-17 96.7 132 40.2
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 5.8e-13 81.3 158 29.7
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 5.8e-13 81.3 129 33.3
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 7.6e-13 80.9 121 34.7
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 1.9e-11 76.3 114 34.2
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 3.5e-10 72.0 61 55.7
Zm00001eb060820 Zea mays HOM05D000726 ORTHO05D007554 4.6e-10 71.6 143 28.7


User provided reference genes

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