Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 9.2e-95 350.1 167 100.0
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 4.9e-80 301.2 168 87.5
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 6.4e-80 300.8 168 87.5
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 3.9e-77 291.6 174 80.5
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 5.6e-76 287.7 169 82.8
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 2.8e-75 285.4 168 81.5
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 4.7e-75 284.6 167 83.2
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 5.6e-60 234.6 165 68.5
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 4.0e-58 228.4 165 64.2
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 1.5e-57 226.5 163 65.0
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 2.0e-57 226.1 168 66.7
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 2.0e-57 226.1 164 64.6
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 3.4e-57 225.3 163 64.4
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 4.5e-57 224.9 167 64.7
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 7.6e-57 224.2 167 64.1
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 7.6e-57 224.2 169 63.9
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.7e-56 223.0 164 66.5
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 1.7e-56 223.0 164 63.4
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 3.8e-56 221.9 168 64.9
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 4.9e-56 221.5 160 66.9
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 4.9e-56 221.5 168 61.3
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 6.4e-56 221.1 167 64.1
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 8.4e-56 220.7 159 67.3
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 1.1e-55 220.3 163 63.2
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.1e-55 220.3 163 64.4
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 1.1e-55 220.3 156 67.3
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 1.4e-55 219.9 159 66.7
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 3.2e-55 218.8 165 63.0
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 5.5e-55 218.0 151 69.5
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 5.5e-55 218.0 163 63.8
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 7.1e-55 217.6 165 61.8
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 7.1e-55 217.6 160 63.8
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 9.3e-55 217.2 164 66.5
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 1.6e-54 216.5 164 62.8
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 2.1e-54 216.1 168 61.9
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 2.7e-54 215.7 164 62.2
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 3.5e-54 215.3 164 63.4
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 3.5e-54 215.3 164 64.0
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 3.5e-54 215.3 168 61.3
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 4.6e-54 214.9 162 63.0
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 6.0e-54 214.5 164 62.2
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 6.0e-54 214.5 168 62.5
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 6.0e-54 214.5 164 59.8
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 7.9e-54 214.2 162 63.6
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 7.9e-54 214.2 171 60.2
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 7.9e-54 214.2 164 59.8
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 7.9e-54 214.2 164 59.8
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 7.9e-54 214.2 164 62.2
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 1.3e-53 213.4 164 59.8
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.8e-53 213.0 174 58.0
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 3.9e-53 211.8 164 60.4
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 3.9e-53 211.8 159 63.5
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 6.7e-53 211.1 162 60.5
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 6.7e-53 211.1 161 65.2
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 6.7e-53 211.1 164 59.1
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.5e-52 209.1 166 61.4
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 2.5e-52 209.1 165 61.2
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 3.3e-52 208.8 149 64.4
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 3.3e-52 208.8 165 61.8
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.3e-51 206.8 168 60.7
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.6e-51 206.5 169 59.2
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.1e-51 206.1 165 60.0
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 2.8e-51 205.7 147 62.6
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.8e-51 205.7 171 60.8
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 2.8e-51 205.7 169 59.2
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 8.2e-51 204.1 164 58.5
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 1.1e-50 203.8 165 60.6
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 4.0e-50 201.8 168 57.7
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 5.3e-50 201.4 161 58.4
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 1.5e-49 199.9 108 91.7
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 2.0e-49 199.5 169 56.2
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 2.0e-49 199.5 169 56.2
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 2.6e-49 199.1 161 54.0
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 2.6e-49 199.1 150 60.0
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 5.8e-49 198.0 169 56.2
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 7.6e-49 197.6 162 54.9
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 7.6e-49 197.6 161 54.0
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 1.3e-48 196.8 161 54.7
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 2.9e-48 195.7 158 56.3
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 2.9e-48 195.7 158 57.6
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 8.4e-48 194.1 161 54.7
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 8.4e-48 194.1 162 55.6
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 1.1e-47 193.7 147 63.3
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 1.9e-47 193.0 161 55.3
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 1.9e-47 193.0 162 53.7
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 2.5e-47 192.6 161 53.4
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 2.5e-47 192.6 161 55.3
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 2.5e-47 192.6 161 55.3
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 2.5e-47 192.6 167 55.1
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 3.2e-47 192.2 161 52.2
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 4.2e-47 191.8 161 54.7
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 7.1e-47 191.0 168 54.8
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 7.1e-47 191.0 161 54.7
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 7.1e-47 191.0 167 52.1
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 1.6e-46 189.9 163 55.8
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 3.5e-46 188.7 150 60.0
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 4.6e-46 188.3 161 50.9
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 6.0e-46 188.0 182 54.9
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 7.9e-46 187.6 161 53.4
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 7.9e-46 187.6 158 55.7
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 7.9e-46 187.6 158 55.7
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 1.0e-45 187.2 161 50.3
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 1.3e-45 186.8 158 55.1
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.3e-45 186.8 164 51.8
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 2.3e-45 186.0 147 55.8
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 3.0e-45 185.7 165 56.4
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 8.7e-45 184.1 144 60.4
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 1.5e-44 183.3 167 56.3
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 5.7e-44 181.4 161 50.9
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 9.7e-44 180.6 150 61.3
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 4.8e-43 178.3 166 59.6
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 1.8e-42 176.4 143 55.2
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.8e-42 176.4 191 46.6
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 4.1e-42 175.3 130 66.2
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 3.4e-41 172.2 185 45.9
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 4.5e-41 171.8 125 67.2
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 7.6e-41 171.0 126 65.9
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 1.7e-40 169.9 153 54.2
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 6.5e-40 167.9 179 48.0
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 1.1e-36 157.1 140 51.4
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 7.4e-36 154.5 110 69.1
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 1.7e-35 153.3 147 49.0
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.4e-34 150.2 138 59.4
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 5.9e-33 144.8 108 62.0
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 1.0e-32 144.1 132 51.5
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 3.8e-32 142.1 158 46.8
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.4e-31 140.2 167 47.3
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 5.5e-31 138.3 162 46.9
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 2.3e-29 132.9 181 43.1
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 9.1e-26 120.9 159 42.1
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 6.5e-24 114.8 99 57.6
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 5.5e-23 111.7 61 73.8
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 1.6e-22 110.2 82 51.2
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 2.1e-22 109.8 90 65.6
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.0e-21 107.5 72 61.1
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 3.9e-21 105.5 53 84.9
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 6.7e-21 104.8 69 60.9
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 7.2e-15 84.7 53 62.3
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 2.6e-12 76.3 64 46.9
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 1.3e-11 73.9 35 82.9
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 1.6e-09 67.0 67 55.2
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 2.7e-09 66.2 133 30.8
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 2.9e-08 62.8 52 61.5
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.5e-07 59.7 68 48.5
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 4.2e-07 58.9 112 31.2
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 5.5e-07 58.5 38 65.8
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.2e-06 57.4 51 58.8


User provided reference genes

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