Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G276.13 Capsicum annuum HOM05D003195 ORTHO05D003773 1.6e-70 269.2 133 100.0
Solyc02g086110.3 Solanum lycopersicum HOM05D003195 ORTHO05D003773 2.8e-09 65.9 35 85.7
Sopen02g030800 Solanum pennellii HOM05D003195 ORTHO05D003773 2.8e-09 65.9 35 85.7
PGSC0003DMG400026391 Solanum tuberosum HOM05D003195 ORTHO05D003773 2.8e-09 65.9 35 85.7
CAN.G625.28 Capsicum annuum HOM05D003195 ORTHO05D003773 4.7e-09 65.1 35 82.9
Peaxi162Scf00394g00718 Petunia axillaris HOM05D003195 ORTHO05D003773 6.1e-09 64.7 35 82.9
CDE06G0743 Ceratophyllum demersum HOM05D003195 ORTHO05D003773 8.0e-09 64.3 35 82.9
HanXRQChr12g0375801 Helianthus annuus HOM05D003195 ORTHO05D003773 1.0e-08 63.9 33 84.8
Lsat_1_v5_gn_3_79640 Lactuca sativa HOM05D003195 ORTHO05D003773 1.0e-08 63.9 33 84.8
Lsat_1_v5_gn_3_79660 Lactuca sativa HOM05D003195 ORTHO05D003773 1.0e-08 63.9 33 84.8
CDE12G0109 Ceratophyllum demersum HOM05D003195 ORTHO05D003773 1.8e-08 63.2 35 80.0
DCAR_021447 Daucus carota HOM05D003195 ORTHO05D003773 3.1e-08 62.4 33 81.8
Atru.chr9.863 Acer truncatum HOM05D003195 ORTHO05D003773 4.0e-08 62.0 35 80.0
Potri.004G098800 Populus trichocarpa HOM05D003195 ORTHO05D003773 4.0e-08 62.0 33 84.8
Solyc03g034250.4 Solanum lycopersicum HOM05D003195 ORTHO05D003773 4.0e-08 62.0 35 77.1
Sopen03g007030 Solanum pennellii HOM05D003195 ORTHO05D003773 4.0e-08 62.0 35 77.1
CsaV3_2G033720 Cucumis sativus L. HOM05D003195 ORTHO05D003773 5.2e-08 61.6 33 84.8
Sabra04G0081000 Salix brachista HOM05D003195 ORTHO05D003773 5.2e-08 61.6 33 81.8
SalBow5G0703 Salvia bowleyana HOM05D003195 ORTHO05D003773 5.2e-08 61.6 33 81.8
Sed0004624 Sechium edule HOM05D003195 ORTHO05D003773 5.2e-08 61.6 33 84.8
Hund16160 Selenicereus undatus HOM05D003195 ORTHO05D003773 5.2e-08 61.6 33 81.8
Atru.chr1.1671 Acer truncatum HOM05D003195 ORTHO05D003773 6.8e-08 61.2 33 78.8
MSTRG.15299 Avicennia marina HOM05D003195 ORTHO05D003773 6.8e-08 61.2 33 81.8
MSTRG.3567 Avicennia marina HOM05D003195 ORTHO05D003773 6.8e-08 61.2 33 81.8
Migut.H00222 Erythranthe guttata HOM05D003195 ORTHO05D003773 6.8e-08 61.2 33 81.8
Migut.L00325 Erythranthe guttata HOM05D003195 ORTHO05D003773 6.8e-08 61.2 33 81.8
Oeu050375.1 Olea europaea HOM05D003195 ORTHO05D003773 6.8e-08 61.2 33 81.8
SalBow3G2560 Salvia bowleyana HOM05D003195 ORTHO05D003773 6.8e-08 61.2 33 81.8
SGA_v2.0_scaffold278G46750 Striga asiatica HOM05D003195 ORTHO05D003773 6.8e-08 61.2 33 81.8
Eucgr.F02502 Eucalyptus grandis HOM05D003195 ORTHO05D003773 8.9e-08 60.8 37 73.0
MSTRG.23578 Avicennia marina HOM05D003195 ORTHO05D003773 1.2e-07 60.5 33 78.8
Aa31LG2G3460 Aethionema arabicum HOM05D003195 ORTHO05D003773 1.5e-07 60.1 33 78.8
Lalb_Chr10g0091281 Lupinus albus HOM05D003195 ORTHO05D003773 1.5e-07 60.1 33 78.8
Nitab4.5_0001382g0030 Nicotiana tabacum HOM05D003195 ORTHO05D003773 1.5e-07 60.1 33 78.8
Nitab4.5_0002207g0030 Nicotiana tabacum HOM05D003195 ORTHO05D003773 1.5e-07 60.1 33 78.8
Peaxi162Scf00104g01110 Petunia axillaris HOM05D003195 ORTHO05D003773 1.5e-07 60.1 33 78.8
Sc10g0001110 Simmondsia chinensis HOM05D003195 ORTHO05D003773 1.5e-07 60.1 33 78.8
PGSC0003DMG400024377 Solanum tuberosum HOM05D003195 ORTHO05D003773 1.5e-07 60.1 33 78.8
PGSC0003DMG403019589 Solanum tuberosum HOM05D003195 ORTHO05D003773 1.5e-07 60.1 33 78.8
THA.LOC104805570 Tarenaya hassleriana HOM05D003195 ORTHO05D003773 1.5e-07 60.1 33 78.8
THA.LOC104823859 Tarenaya hassleriana HOM05D003195 ORTHO05D003773 1.5e-07 60.1 33 78.8
unitig_32.g10652 Utricularia gibba HOM05D003195 ORTHO05D003773 1.5e-07 60.1 33 78.8
vmacro05549 Vaccinium macrocarpon HOM05D003195 ORTHO05D003773 1.5e-07 60.1 33 78.8
GSVIVG01031014001 Vitis vinifera HOM05D003195 ORTHO05D003773 1.5e-07 60.1 33 78.8
AL2G25410 Arabidopsis lyrata HOM05D003195 ORTHO05D003773 2.0e-07 59.7 33 75.8
AT1G67060 Arabidopsis thaliana HOM05D003195 ORTHO05D003773 2.0e-07 59.7 33 75.8
BcaB05g24233 Brassica carinata HOM05D003195 ORTHO05D003773 2.0e-07 59.7 33 75.8
BcaC03g14792 Brassica carinata HOM05D003195 ORTHO05D003773 2.0e-07 59.7 33 75.8
A02p13890 Brassica napus HOM05D003195 ORTHO05D003773 2.0e-07 59.7 33 75.8
C02p22390 Brassica napus HOM05D003195 ORTHO05D003773 2.0e-07 59.7 33 75.8
BolC2t08393H Brassica oleracea HOM05D003195 ORTHO05D003773 2.0e-07 59.7 33 75.8
BraA02t06450Z Brassica rapa HOM05D003195 ORTHO05D003773 2.0e-07 59.7 33 75.8
Carub.0002s1335 Capsella rubella HOM05D003195 ORTHO05D003773 2.0e-07 59.7 33 75.8
CARHR059480 Cardamine hirsuta HOM05D003195 ORTHO05D003773 2.0e-07 59.7 33 75.8
Thhalv10019077m.g Eutrema salsugineum HOM05D003195 ORTHO05D003773 2.0e-07 59.7 33 75.8
Sp5g21990 Schrenkiella parvula HOM05D003195 ORTHO05D003773 2.0e-07 59.7 33 75.8
ClCG11G007870 Citrullus lanatus HOM05D003195 ORTHO05D003773 2.6e-07 59.3 32 81.2
Dinv33951 Davidia involucrata HOM05D003195 ORTHO05D003773 2.6e-07 59.3 33 78.8
Os02g0221600 Oryza sativa ssp. japonica HOM05D003195 ORTHO05D003773 2.6e-07 59.3 33 75.8
Zm00001eb012780 Zea mays HOM05D003195 ORTHO05D003773 2.6e-07 59.3 33 75.8
Zm00001eb397400 Zea mays HOM05D003195 ORTHO05D003773 2.6e-07 59.3 33 75.8
Hma1.2p1_1109F.1_g258080 Hydrangea macrophylla HOM05D003195 ORTHO05D003773 3.4e-07 58.9 33 78.8
Manes.02G069400 Manihot esculenta HOM05D003195 ORTHO05D003773 3.4e-07 58.9 33 78.8
MELO3C008142.2 Cucumis melo HOM05D003195 ORTHO05D003773 4.4e-07 58.5 30 86.7
Lj4A191T46 Lonicera japonica HOM05D003195 ORTHO05D003773 4.4e-07 58.5 31 80.6
MD06G1217500 Malus domestica HOM05D003195 ORTHO05D003773 4.4e-07 58.5 35 77.1
MD14G1227700 Malus domestica HOM05D003195 ORTHO05D003773 4.4e-07 58.5 35 77.1
Ah.16g101720 Amaranthus hybridus HOM05D003195 ORTHO05D003773 5.8e-07 58.2 33 78.8
Prupe.5G222700 Prunus persica HOM05D003195 ORTHO05D003773 5.8e-07 58.2 35 74.3
QL10p025608 Quercus lobata HOM05D003195 ORTHO05D003773 5.8e-07 58.2 35 71.4
HPP92_019813 Vanilla planifolia HOM05D003195 ORTHO05D003773 5.8e-07 58.2 33 72.7
EL10Ac2g04559 Beta vulgaris HOM05D003195 ORTHO05D003773 7.5e-07 57.8 33 78.8
CAN.G82.4 Capsicum annuum HOM05D003195 ORTHO05D003773 7.5e-07 57.8 33 75.8
Ciclev10012627m.g Citrus clementina HOM05D003195 ORTHO05D003773 7.5e-07 57.8 33 75.8
Dinv34818 Davidia involucrata HOM05D003195 ORTHO05D003773 7.5e-07 57.8 33 75.8
Duzib133G1273 Durio zibethinus HOM05D003195 ORTHO05D003773 7.5e-07 57.8 33 75.8
Nn4g23892 Nelumbo nucifera HOM05D003195 ORTHO05D003773 7.5e-07 57.8 33 75.8
TAR371G1046 Trochodendron aralioides HOM05D003195 ORTHO05D009168 7.5e-07 57.8 33 75.8
Actinidia15887 Actinidia chinensis HOM05D003195 ORTHO05D003773 9.8e-07 57.4 33 75.8
Aqoxy3G00261 Aquilegia oxysepala HOM05D003195 ORTHO05D003773 9.8e-07 57.4 33 75.8
CANSAT78G0992 Cannabis sativa HOM05D003195 ORTHO05D003773 9.8e-07 57.4 33 75.8
Rhsim10G0068000 Rhododendron simsii HOM05D003195 ORTHO05D003773 9.8e-07 57.4 33 75.8
TWI53G0997 Tripterygium wilfordii HOM05D003195 ORTHO05D003773 9.8e-07 57.4 33 75.8
TWI74G1558 Tripterygium wilfordii HOM05D003195 ORTHO05D003773 9.8e-07 57.4 33 75.8
TAR622G1191 Trochodendron aralioides HOM05D003195 ORTHO05D003773 9.8e-07 57.4 33 72.7
ATR1125G011 Amborella trichopoda HOM05D003195 ORTHO05D003773 1.3e-06 57.0 33 72.7
Ciclev10023924m.g Citrus clementina HOM05D003195 ORTHO05D003773 1.3e-06 57.0 35 71.4
Cc07_g08760 Coffea canephora HOM05D003195 ORTHO05D003773 1.3e-06 57.0 33 75.8
Medtr7g082140 Medicago truncatula HOM05D003195 ORTHO05D003773 1.3e-06 57.0 33 75.8
PSO063G5893 Papaver somniferum HOM05D003195 ORTHO05D003773 1.3e-06 57.0 33 75.8
PSO782G3507 Papaver somniferum HOM05D003195 ORTHO05D003773 1.3e-06 57.0 33 75.8
Psat3g098560 Pisum sativum HOM05D003195 ORTHO05D003773 1.3e-06 57.0 33 75.8
TPR.G29085 Trifolium pratense HOM05D003195 ORTHO05D003773 1.3e-06 57.0 33 75.8
TAR629G0768 Trochodendron aralioides HOM05D003195 ORTHO05D003773 1.3e-06 57.0 33 75.8
Cpa.g.c35056 Carica papaya HOM05D003195 ORTHO05D003773 1.7e-06 56.6 30 80.0
Ca_08074_v3 Cicer arietinum L. HOM05D003195 ORTHO05D003773 1.7e-06 56.6 33 75.8
COL.COLO4_09344 Corchorus olitorius HOM05D003195 ORTHO05D003773 1.7e-06 56.6 33 75.8
Glyma.08G366100 Glycine max HOM05D003195 ORTHO05D003773 1.7e-06 56.6 33 75.8
Glyma.18G296200 Glycine max HOM05D003195 ORTHO05D003773 1.7e-06 56.6 33 75.8
MBI16_g23457_MAGBIO Magnolia biondii HOM05D003195 ORTHO05D003773 1.7e-06 56.6 33 72.7
Phvul.008G006400 Phaseolus vulgaris HOM05D003195 ORTHO05D003773 1.7e-06 56.6 33 75.8
GSVIVG01008308001 Vitis vinifera HOM05D003195 ORTHO05D003773 1.7e-06 56.6 33 75.8
arahy.Tifrunner.gnm1.ann1.DJ6Y7L Arachis hypogaea HOM05D003195 ORTHO05D003773 2.2e-06 56.2 33 72.7
Haze_14162 Corylus avellana HOM05D003195 ORTHO05D003773 2.2e-06 56.2 33 72.7
FvH4_5g11891 Fragaria vesca HOM05D003195 ORTHO05D003773 2.2e-06 56.2 33 75.8
FAN04G2107 Fragaria x ananassa HOM05D003195 ORTHO05D003773 2.2e-06 56.2 33 75.8
FAN08G2993 Fragaria x ananassa HOM05D003195 ORTHO05D003773 2.2e-06 56.2 33 75.8
FAN18G4034 Fragaria x ananassa HOM05D003195 ORTHO05D003773 2.2e-06 56.2 33 75.8
FAN18G4239 Fragaria x ananassa HOM05D003195 ORTHO05D003773 2.2e-06 56.2 33 75.8
Nn3g17887 Nelumbo nucifera HOM05D003195 ORTHO05D003773 2.2e-06 56.2 33 75.8
RcHm_v2.0_Chr7g0185681 Rosa chinensis HOM05D003195 ORTHO05D003773 2.2e-06 56.2 35 71.4
Gohir.A08G053100 Gossypium hirsutum HOM05D003195 ORTHO05D003773 2.9e-06 55.8 35 71.4
Gohir.D08G062700 Gossypium hirsutum HOM05D003195 ORTHO05D003773 2.9e-06 55.8 35 71.4
Gorai.004G064900 Gossypium raimondii HOM05D003195 ORTHO05D003773 2.9e-06 55.8 35 71.4
Haze_18694 Corylus avellana HOM05D003195 ORTHO05D003773 3.7e-06 55.5 35 68.6
CiPaw.16G087700 Carya illinoinensis HOM05D003195 ORTHO05D003773 4.9e-06 55.1 35 68.6
Prupe.3G143000 Prunus persica HOM05D003195 ORTHO05D003773 4.9e-06 55.1 33 75.8
Cc00_g11610 Coffea canephora HOM05D003195 ORTHO05D003773 6.4e-06 54.7 33 72.7
QL02p051116 Quercus lobata HOM05D003195 ORTHO05D003773 6.4e-06 54.7 35 68.6
Thecc.04G132800 Theobroma cacao HOM05D003195 ORTHO05D003773 6.4e-06 54.7 33 72.7
Dinv15690 Davidia involucrata HOM05D003195 ORTHO05D003773 8.3e-06 54.3 33 72.7
Duzib205G2069 Durio zibethinus HOM05D003195 ORTHO05D003773 8.3e-06 54.3 33 72.7
ECA238G4561 Erigeron canadensis HOM05D003195 ORTHO05D003773 8.3e-06 54.3 33 69.7
FvH4_5g11892 Fragaria vesca HOM05D003195 ORTHO05D003773 8.3e-06 54.3 33 72.7
FAN13G1862 Fragaria x ananassa HOM05D003195 ORTHO05D003773 8.3e-06 54.3 33 72.7
Gohir.A09G048600 Gossypium hirsutum HOM05D003195 ORTHO05D003773 8.3e-06 54.3 33 72.7
Gohir.D09G049700 Gossypium hirsutum HOM05D003195 ORTHO05D003773 8.3e-06 54.3 33 72.7
Gorai.006G060100 Gossypium raimondii HOM05D003195 ORTHO05D003773 8.3e-06 54.3 33 72.7
Lj1g0004565 Lotus japonicus HOM05D003195 ORTHO05D003773 8.3e-06 54.3 33 72.7
Prupe.5G222600 Prunus persica HOM05D003195 ORTHO05D003773 8.3e-06 54.3 33 72.7
PGR083G2458 Punica granatum HOM05D003195 ORTHO05D003773 8.3e-06 54.3 33 72.7
RcHm_v2.0_Chr2g0126081 Rosa chinensis HOM05D003195 ORTHO05D003773 8.3e-06 54.3 33 72.7
RcHm_v2.0_Chr7g0185671 Rosa chinensis HOM05D003195 ORTHO05D003773 8.3e-06 54.3 33 72.7
SMO174G0159 Selaginella moellendorffii HOM05D003195 ORTHO05D003773 8.3e-06 54.3 30 76.7
Thecc.03G037100 Theobroma cacao HOM05D003195 ORTHO05D003773 8.3e-06 54.3 33 72.7
VMungo1383G2772 Vigna mungo HOM05D003195 ORTHO05D003773 8.3e-06 54.3 33 72.7


User provided reference genes

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