Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 0.0e+00 1159.1 1015 100.0
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 2.6e-261 906.0 1034 84.9
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 1.0e-252 877.5 1034 84.6
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 7.1e-206 721.8 1035 74.5
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 1.8e-201 707.2 1036 63.2
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.7e-191 674.1 1044 70.9
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 6.4e-183 645.6 923 76.1
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 2.5e-126 457.6 1051 57.7
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 1.3e-122 445.3 1059 57.7
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 6.6e-119 433.0 1056 59.2
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 3.4e-115 420.6 977 55.9
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 4.4e-115 420.2 1055 58.2
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 6.4e-114 416.4 1005 58.1
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 3.2e-113 414.1 1057 57.1
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 9.2e-113 412.5 1006 58.0
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 1.0e-111 409.1 1051 57.9
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 2.8e-109 401.0 1041 55.9
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 3.6e-109 400.6 1041 55.9
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 4.0e-108 397.1 1045 47.7
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 6.8e-108 396.4 1055 57.3
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 1.5e-107 395.2 1053 59.3
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 5.8e-107 393.3 1031 57.4
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 5.8e-107 393.3 1053 57.7
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 4.1e-105 387.1 1060 57.4
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 5.4e-105 386.7 723 53.0
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 6.6e-103 379.8 631 62.6
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 2.5e-102 377.9 1041 54.6
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 9.5e-102 375.9 1051 56.7
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 9.5e-102 375.9 1042 55.2
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 1.6e-101 375.2 1041 54.2
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 2.1e-101 374.8 961 57.3
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 2.1e-101 374.8 912 59.9
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 3.6e-101 374.0 722 51.2
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 3.6e-101 374.0 1038 50.9
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 6.2e-101 373.2 965 60.2
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 3.1e-100 370.9 1050 54.4
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 3.1e-100 370.9 1042 55.3
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 1.4e-97 362.1 1052 56.4
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 1.6e-96 358.6 721 49.1
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 2.7e-96 357.8 1053 53.9
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 2.3e-95 354.8 1048 49.9
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 3.0e-95 354.4 1043 55.1
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 5.1e-95 353.6 1055 53.5
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 1.2e-93 349.0 1048 49.6
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 1.6e-93 348.6 720 50.4
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 1.1e-92 345.9 1053 54.0
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 1.2e-91 342.4 1053 51.2
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 2.0e-91 341.7 1053 54.1
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 2.4e-89 334.7 727 50.8
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 2.5e-86 324.7 715 48.7
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 3.3e-86 324.3 723 48.5
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 1.6e-85 322.0 1042 43.5
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 1.6e-85 322.0 726 51.0
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 8.1e-85 319.7 697 49.2
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 1.4e-84 318.9 830 56.1
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 5.8e-83 313.5 1036 56.7
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 9.9e-83 312.8 1054 46.0
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 2.2e-82 311.6 1058 52.4
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 2.4e-81 308.1 1041 55.6
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 1.2e-80 305.8 904 55.9
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 1.9e-78 298.5 1032 52.2
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 5.6e-78 297.0 727 49.4
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 5.6e-70 270.4 655 53.0
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 8.1e-69 266.5 623 44.6
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 8.1e-69 266.5 1006 37.8
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 1.3e-66 259.2 723 47.7
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 2.2e-66 258.5 1076 54.7
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 2.1e-64 251.9 723 44.1
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 1.0e-63 249.6 1039 49.2
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 1.1e-62 246.1 723 44.0
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 4.3e-62 244.2 723 44.5
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 4.8e-61 240.7 723 44.0
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 1.4e-60 239.2 655 51.0
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 9.0e-60 236.5 724 43.6
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 1.5e-59 235.7 722 43.9
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 6.9e-52 210.3 949 53.0
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 7.6e-51 206.8 725 42.9
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 7.6e-51 206.8 725 42.9
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 6.5e-50 203.8 613 46.5
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 3.2e-49 201.4 314 36.3
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 6.1e-48 197.2 506 51.0
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 7.4e-46 190.3 336 33.0
Nitab4.5_0007383g0080 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.3e-45 189.5 210 51.0
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 2.2e-45 188.7 905 55.1
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 8.2e-45 186.8 536 50.2
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 6.7e-39 167.2 725 43.3
MD16G1250300 Malus domestica HOM05D006842 ORTHO05D008908 4.2e-33 147.9 221 40.3
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 7.2e-33 147.1 727 40.9
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 1.4e-31 142.9 726 41.5
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 2.6e-30 138.7 484 63.0
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 1.3e-29 136.3 580 45.3
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 4.5e-27 127.9 136 47.1
RcHm_v2.0_Chr2g0131261 Rosa chinensis HOM05D006842 ORTHO05D008908 8.5e-26 123.6 149 40.9
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 8.2e-21 107.1 316 31.3
MD16G1250400 Malus domestica HOM05D006842 ORTHO05D008908 3.5e-19 101.7 245 28.6
Sc08g0004670 Simmondsia chinensis HOM05D006842 ORTHO05D008908 8.5e-18 97.1 442 62.0
Glyma.09G058502 Glycine max HOM05D006842 ORTHO05D008908 1.9e-17 95.9 153 36.6
Hund08945 Selenicereus undatus HOM05D006842 ORTHO05D008908 3.0e-15 88.6 409 61.6
Ah.14g084430 Amaranthus hybridus HOM05D006842 ORTHO05D008908 2.0e-14 85.9 426 60.3
AUR62028364 Chenopodium quinoa HOM05D006842 ORTHO05D008908 2.2e-13 82.4 133 42.1
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 3.7e-13 81.6 135 35.6
AUR62025363 Chenopodium quinoa HOM05D006842 ORTHO05D008908 4.8e-13 81.3 133 38.3
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 1.4e-12 79.7 205 29.3
MD16G1250600 Malus domestica HOM05D006842 ORTHO05D008908 1.3e-10 73.2 144 31.9
Nn8g40884 Nelumbo nucifera HOM05D006842 ORTHO05D008908 8.6e-10 70.5 125 37.6
AUR62039733 Chenopodium quinoa HOM05D006842 ORTHO05D008908 7.2e-09 67.4 76 44.7
Thhalv10022683m.g Eutrema salsugineum HOM05D007700 ORTHO05D009669 2.3e-07 62.4 169 23.7
A09p62690 Brassica napus HOM05D000162 ORTHO05D000090 4.0e-07 61.6 181 26.5
RcHm_v2.0_Chr4g0441861 Rosa chinensis HOM05D000001 ORTHO05D000648 6.8e-07 60.8 124 26.6
CSS0037549 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 8.8e-07 60.5 188 26.1
QL06p052538 Quercus lobata HOM05D007700 ORTHO05D009669 1.2e-06 60.1 166 25.9
RcHm_v2.0_Chr4g0401991 Rosa chinensis HOM05D000001 ORTHO05D000648 1.2e-06 60.1 124 26.6
Thhalv10007086m.g Eutrema salsugineum HOM05D007552 ORTHO05D009397 1.5e-06 59.7 135 25.9
BolC3t13332H Brassica oleracea HOM05D007455 ORTHO05D009431 2.6e-06 58.9 130 32.3
MD16G1250500 Malus domestica HOM05D006842 ORTHO05D008908 2.6e-06 58.9 54 50.0
RcHm_v2.0_Chr4g0445881 Rosa chinensis HOM05D007280 ORTHO05D009108 2.6e-06 58.9 85 37.6
CDE05G1147 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 4.4e-06 58.2 148 27.7
Sp3g31020 Schrenkiella parvula HOM05D007700 ORTHO05D009669 4.4e-06 58.2 168 24.4
CDE12G0140 Ceratophyllum demersum HOM05D001779 ORTHO05D001753 5.7e-06 57.8 129 31.8
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 5.7e-06 57.8 168 26.2
Eucgr.I02272 Eucalyptus grandis HOM05D007700 ORTHO05D009669 7.5e-06 57.4 166 24.1
TAR633G2615 Trochodendron aralioides HOM05D001779 ORTHO05D001753 7.5e-06 57.4 129 29.5
EL10Ac7g17850 Beta vulgaris HOM05D001779 ORTHO05D001753 9.8e-06 57.0 151 28.5
MD13G1010900 Malus domestica HOM05D007280 ORTHO05D009108 9.8e-06 57.0 94 36.2


User provided reference genes

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