Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G27.7 Capsicum annuum HOM05D006025 ORTHO05D008547 5.0e-177 624.4 329 100.0
Nitab4.5_0000679g0100 Nicotiana tabacum HOM05D006025 ORTHO05D008547 3.5e-130 468.8 327 78.6
Sopen05g002930 Solanum pennellii HOM05D006025 ORTHO05D008547 5.2e-126 454.9 332 77.7
PGSC0003DMG400017619 Solanum tuberosum HOM05D006025 ORTHO05D008547 3.7e-124 448.7 330 77.6
Nitab4.5_0002969g0040 Nicotiana tabacum HOM05D006025 ORTHO05D008547 3.0e-113 412.5 355 67.9
Peaxi162Scf00209g00517 Petunia axillaris HOM05D006025 ORTHO05D008547 8.7e-113 411.0 330 71.5
Actinidia31175 Actinidia chinensis HOM05D006025 ORTHO05D008547 1.3e-105 387.1 330 67.6
Migut.L01348 Erythranthe guttata HOM05D006025 ORTHO05D008547 8.7e-105 384.4 330 66.4
Prupe.1G267200 Prunus persica HOM05D006025 ORTHO05D008547 1.5e-104 383.6 342 65.5
Cc11_g13550 Coffea canephora HOM05D006025 ORTHO05D008547 1.6e-103 380.2 331 65.0
SalBow8G3437 Salvia bowleyana HOM05D006025 ORTHO05D008547 8.1e-103 377.9 312 69.2
COL.COLO4_36182 Corchorus olitorius HOM05D006025 ORTHO05D008547 3.1e-102 375.9 322 65.5
Migut.E00118 Erythranthe guttata HOM05D006025 ORTHO05D008547 4.0e-102 375.6 295 68.5
Rhsim12G0129700 Rhododendron simsii HOM05D006025 ORTHO05D008547 9.0e-102 374.4 332 65.1
Manes.05G096000 Manihot esculenta HOM05D006025 ORTHO05D008547 2.6e-101 372.9 326 63.2
Thecc.02G232800 Theobroma cacao HOM05D006025 ORTHO05D008547 3.4e-101 372.5 261 75.1
Dinv34195 Davidia involucrata HOM05D006025 ORTHO05D008547 6.4e-100 368.2 336 63.4
FAN22G0508 Fragaria x ananassa HOM05D006025 ORTHO05D008547 1.4e-99 367.1 246 78.9
FvH4_4g32070 Fragaria vesca HOM05D006025 ORTHO05D008547 4.2e-99 365.5 246 78.9
FAN12G1990 Fragaria x ananassa HOM05D006025 ORTHO05D008547 5.4e-99 365.2 243 79.4
Lj6A795T74 Lonicera japonica HOM05D006025 ORTHO05D008547 5.4e-99 365.2 327 62.1
MD16G1079500 Malus domestica HOM05D006025 ORTHO05D008547 5.4e-99 365.2 330 64.2
MSTRG.7831 Avicennia marina HOM05D006025 ORTHO05D008547 1.2e-98 364.0 314 65.0
Lj2g0002167 Lotus japonicus HOM05D006025 ORTHO05D008547 3.5e-98 362.5 315 65.7
FAN07G0827 Fragaria x ananassa HOM05D006025 ORTHO05D008547 4.6e-98 362.1 248 77.8
MD13G1079600 Malus domestica HOM05D006025 ORTHO05D008547 6.0e-98 361.7 262 72.9
RcHm_v2.0_Chr4g0440761 Rosa chinensis HOM05D006025 ORTHO05D008547 1.8e-97 360.1 248 76.6
CANSAT78G1034 Cannabis sativa HOM05D006025 ORTHO05D008547 3.0e-97 359.4 256 73.0
Ciclev10032129m.g Citrus clementina HOM05D006025 ORTHO05D008547 5.1e-97 358.6 253 74.7
vmacro16324 Vaccinium macrocarpon HOM05D006025 ORTHO05D008547 5.1e-97 358.6 372 57.5
Sabra10G0030400 Salix brachista HOM05D006025 ORTHO05D008547 6.7e-97 358.2 253 73.5
Hund25274 Selenicereus undatus HOM05D006025 ORTHO05D008547 1.5e-96 357.1 334 62.6
Atru.chr11.1861 Acer truncatum HOM05D006025 ORTHO05D008547 1.9e-96 356.7 336 62.5
Gorai.009G347000 Gossypium raimondii HOM05D006025 ORTHO05D008547 1.9e-96 356.7 333 60.7
QL03p065944 Quercus lobata HOM05D006025 ORTHO05D008547 9.6e-96 354.4 328 63.4
PGR119G0173 Punica granatum HOM05D006025 ORTHO05D008547 1.3e-95 354.0 234 79.5
Potri.010G034400 Populus trichocarpa HOM05D006025 ORTHO05D008547 2.1e-95 353.2 248 73.8
Gohir.D05G323300 Gossypium hirsutum HOM05D006025 ORTHO05D008547 2.8e-95 352.8 333 59.8
Glyma.01G040500 Glycine max HOM05D006025 ORTHO05D008547 3.7e-95 352.4 324 61.7
Gohir.A05G321100 Gossypium hirsutum HOM05D006025 ORTHO05D008547 3.7e-95 352.4 333 60.1
EL10Ac6g13142 Beta vulgaris HOM05D006025 ORTHO05D008547 8.1e-95 351.3 336 60.7
Phvul.002G080900 Phaseolus vulgaris HOM05D006025 ORTHO05D008547 1.1e-94 350.9 332 60.2
Medtr5g037600 Medicago truncatula HOM05D006025 ORTHO05D008547 1.4e-94 350.5 312 63.8
CsaV3_5G032300 Cucumis sativus L. HOM05D006025 ORTHO05D008547 1.8e-94 350.1 269 70.6
VMungo1215G1908 Vigna mungo HOM05D006025 ORTHO05D008547 1.8e-94 350.1 303 62.0
TPR.G26717 Trifolium pratense HOM05D006025 ORTHO05D008547 2.4e-94 349.7 326 62.0
Cfa009042 Carpinus fangiana HOM05D006025 ORTHO05D008547 3.1e-94 349.4 329 63.2
MELO3C012062.2 Cucumis melo HOM05D006025 ORTHO05D008547 5.3e-94 348.6 269 70.6
Oeu044566.1 Olea europaea HOM05D006025 ORTHO05D008547 5.3e-94 348.6 304 64.8
Lsat_1_v5_gn_3_49700 Lactuca sativa HOM05D006025 ORTHO05D008547 6.9e-94 348.2 337 60.5
GSVIVG01020079001 Vitis vinifera HOM05D006025 ORTHO05D008547 6.9e-94 348.2 334 59.6
Sc11g0001660 Simmondsia chinensis HOM05D006025 ORTHO05D008547 9.0e-94 347.8 244 75.4
CiPaw.05G140400 Carya illinoinensis HOM05D006025 ORTHO05D008547 1.5e-93 347.1 327 62.1
Lalb_Chr05g0217521 Lupinus albus HOM05D006025 ORTHO05D008547 2.0e-93 346.7 316 61.4
Cpa.g.sc73.14 Carica papaya HOM05D006025 ORTHO05D008547 4.5e-93 345.5 307 62.5
HanXRQChr15g0478181 Helianthus annuus HOM05D006025 ORTHO05D008547 5.8e-93 345.1 336 60.4
Ca_04692_v3 Cicer arietinum L. HOM05D006025 ORTHO05D008547 9.9e-93 344.4 311 63.0
TWI18G0579 Tripterygium wilfordii HOM05D006025 ORTHO05D008547 9.9e-93 344.4 259 71.0
ClCG05G024630 Citrullus lanatus HOM05D006025 ORTHO05D008547 6.4e-92 341.7 254 71.7
Sed0022227 Sechium edule HOM05D006025 ORTHO05D008547 2.4e-91 339.7 254 70.1
AL5G11850 Arabidopsis lyrata HOM05D006025 ORTHO05D008547 3.2e-91 339.3 333 59.8
BcaC06g31223 Brassica carinata HOM05D006025 ORTHO05D008547 3.2e-91 339.3 299 62.9
Carub.0005s0158 Capsella rubella HOM05D006025 ORTHO05D008547 7.1e-91 338.2 338 60.1
Thhalv10004613m.g Eutrema salsugineum HOM05D006025 ORTHO05D008547 7.1e-91 338.2 330 60.3
Psat2g115440 Pisum sativum HOM05D006025 ORTHO05D008547 7.1e-91 338.2 320 60.6
BcaC06g34048 Brassica carinata HOM05D006025 ORTHO05D008547 3.5e-90 335.9 310 60.6
AT2G02590 Arabidopsis thaliana HOM05D006025 ORTHO05D008547 4.6e-90 335.5 264 68.9
C07p33300 Brassica napus HOM05D006025 ORTHO05D008547 4.6e-90 335.5 310 60.6
Sp2g13810 Schrenkiella parvula HOM05D006025 ORTHO05D008547 6.0e-90 335.1 329 59.6
TAR481G0011 Trochodendron aralioides HOM05D006025 ORTHO05D008547 6.0e-90 335.1 299 61.9
Duzib268G1145 Durio zibethinus HOM05D006025 ORTHO05D008547 7.9e-90 334.7 237 73.4
THA.LOC104805137 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 1.0e-89 334.3 325 58.8
arahy.Tifrunner.gnm1.ann1.1ZL8TB Arachis hypogaea HOM05D006025 ORTHO05D008547 5.1e-89 332.0 236 73.7
arahy.Tifrunner.gnm1.ann1.V5YJYF Arachis hypogaea HOM05D006025 ORTHO05D008547 5.1e-89 332.0 236 74.2
BraA09t37996Z Brassica rapa HOM05D006025 ORTHO05D008547 5.1e-89 332.0 332 58.7
A09p23920 Brassica napus HOM05D006025 ORTHO05D008547 8.7e-89 331.3 332 58.7
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 1.1e-88 330.9 210 82.9
BolC7t43841H Brassica oleracea HOM05D006025 ORTHO05D008547 3.3e-88 329.3 314 59.6
A06p43550 Brassica napus HOM05D006025 ORTHO05D008547 2.1e-87 326.6 332 57.8
BraA06t27240Z Brassica rapa HOM05D006025 ORTHO05D008547 2.8e-87 326.2 332 57.8
BolC9t55941H Brassica oleracea HOM05D006025 ORTHO05D008547 4.8e-87 325.5 289 64.0
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 6.2e-87 325.1 234 73.5
C09p30780 Brassica napus HOM05D006025 ORTHO05D008547 1.4e-86 323.9 295 62.7
SGA_v2.0_scaffold87G26972 Striga asiatica HOM05D006025 ORTHO05D008547 2.4e-86 323.2 330 57.0
Aa31LG2G7560 Aethionema arabicum HOM05D006025 ORTHO05D008547 9.0e-86 321.2 263 65.8
Aqoxy3G00786 Aquilegia oxysepala HOM05D006025 ORTHO05D008547 9.0e-86 321.2 237 71.3
AUR62026262 Chenopodium quinoa HOM05D006025 ORTHO05D008547 1.2e-85 320.9 212 77.8
BcaC04g21520 Brassica carinata HOM05D006025 ORTHO05D008547 2.6e-85 319.7 285 63.5
Nn4g23031 Nelumbo nucifera HOM05D006025 ORTHO05D008547 2.6e-85 319.7 275 63.6
PSO478G1322 Papaver somniferum HOM05D006025 ORTHO05D008547 3.4e-85 319.3 303 60.1
CARHR145110 Cardamine hirsuta HOM05D006025 ORTHO05D008547 4.5e-85 318.9 331 57.7
HanXRQChr17g0544581 Helianthus annuus HOM05D006025 ORTHO05D008547 1.0e-84 317.8 242 69.8
SalBow2G1916 Salvia bowleyana HOM05D006025 ORTHO05D008547 2.9e-84 316.2 253 66.8
CSS0050443 Camellia sinensis var. sinensis HOM05D006025 ORTHO05D008547 4.2e-83 312.4 198 79.3
ATR0665G167 Amborella trichopoda HOM05D006025 ORTHO05D008547 1.2e-82 310.8 327 54.4
MBI04_g22196_MAGBIO Magnolia biondii HOM05D006025 ORTHO05D008547 1.6e-82 310.5 199 76.4
BcaB07g30697 Brassica carinata HOM05D006025 ORTHO05D008547 2.7e-82 309.7 228 72.4
unitig_62.g23684 Utricularia gibba HOM05D006025 ORTHO05D008547 4.6e-82 308.9 303 57.8
AUR62026454 Chenopodium quinoa HOM05D006025 ORTHO05D008547 7.9e-82 308.1 218 76.6
Haze_12072 Corylus avellana HOM05D006025 ORTHO05D008547 2.3e-81 306.6 305 59.7
ECA246G2177 Erigeron canadensis HOM05D006025 ORTHO05D008547 5.1e-81 305.4 211 74.4
Eucgr.B02589 Eucalyptus grandis HOM05D006025 ORTHO05D008547 6.7e-81 305.1 204 77.5
Os03g0800500 Oryza sativa ssp. japonica HOM05D006025 ORTHO05D008547 3.3e-80 302.8 214 72.9
Zm00001eb212770 Zea mays HOM05D006025 ORTHO05D008547 2.9e-68 263.1 199 67.8
SEGI_16485 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 3.2e-67 259.6 215 61.9
Mapoly0001s0092 Marchantia polymorpha HOM05D006025 ORTHO05D008547 3.4e-61 239.6 248 52.0
AagrBONN_evm.TU.Sc2ySwM_117.678 Anthoceros agrestis HOM05D006025 ORTHO05D008547 5.9e-61 238.8 315 47.9
SMO147G0037 Selaginella moellendorffii HOM05D006025 ORTHO05D008547 3.6e-58 229.6 201 56.7
CBR_g39595 Chara braunii HOM05D006025 ORTHO05D008547 3.9e-57 226.1 226 51.8
CDE07G0470 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 2.8e-55 219.9 167 65.3
Pp3c22_2360 Physcomitrium patens HOM05D006025 ORTHO05D008547 8.2e-55 218.4 225 52.4
HPP92_018837 Vanilla planifolia HOM05D006025 ORTHO05D008547 7.0e-54 215.3 150 73.3
Glyma.02G024100 Glycine max HOM05D006025 ORTHO05D008547 1.1e-35 154.8 201 51.7
Solyc05g006965.1 Solanum lycopersicum HOM05D006025 ORTHO05D008547 5.2e-33 146.0 180 52.8
CDE06G2488 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 1.2e-32 144.8 178 46.1
SEGI_34054 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 3.4e-32 143.3 110 65.5
Hma1.2p1_0513F.1_g169540 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 8.0e-18 95.5 75 68.0
Hma1.2p1_0808F.1_g221580 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 1.1e-17 95.1 75 66.7
DCAR_001229 Daucus carota HOM05D006025 ORTHO05D008547 1.5e-11 74.7 50 78.0
Zm00001eb151370 Zea mays HOM05D006025 ORTHO05D443914 4.7e-10 69.7 57 66.7
Dinv16285 Davidia involucrata HOM05D000027 ORTHO05D000500 1.3e-07 61.6 38 84.2


User provided reference genes

Program Settings