Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G269.1 Capsicum annuum HOM05D000875 ORTHO05D000684 8.2e-73 276.9 139 100.0
Solyc06g030470.4 Solanum lycopersicum HOM05D000875 ORTHO05D000684 8.9e-35 150.6 135 60.7
Sopen06g009320 Solanum pennellii HOM05D000875 ORTHO05D000684 8.9e-35 150.6 135 60.7
Nitab4.5_0001897g0020 Nicotiana tabacum HOM05D000875 ORTHO05D000684 3.4e-34 148.7 138 61.6
PGSC0003DMG400002267 Solanum tuberosum HOM05D000875 ORTHO05D000684 2.9e-33 145.6 135 61.5
Nitab4.5_0001634g0040 Nicotiana tabacum HOM05D000875 ORTHO05D000684 1.1e-32 143.7 140 60.0
PGSC0003DMG400000416 Solanum tuberosum HOM05D000875 ORTHO05D000684 2.0e-26 122.9 156 48.1
Peaxi162Scf00365g00021 Petunia axillaris HOM05D000875 ORTHO05D000684 2.6e-26 122.5 156 51.3
CAN.G546.48 Capsicum annuum HOM05D000875 ORTHO05D000684 3.4e-26 122.1 156 48.1
Solyc11g066380.3 Solanum lycopersicum HOM05D000875 ORTHO05D000684 4.4e-26 121.7 156 47.4
Sopen11g026130 Solanum pennellii HOM05D000875 ORTHO05D000684 4.4e-26 121.7 156 47.4
Nitab4.5_0028110g0010 Nicotiana tabacum HOM05D000875 ORTHO05D000684 1.3e-25 120.2 156 46.8
Peaxi162Scf00983g00415 Petunia axillaris HOM05D000875 ORTHO05D000684 1.7e-25 119.8 142 48.6
Nitab4.5_0004414g0030 Nicotiana tabacum HOM05D000875 ORTHO05D000684 2.2e-25 119.4 156 46.8
Oeu008358.1 Olea europaea HOM05D000875 ORTHO05D000684 3.5e-23 112.1 155 46.5
Oeu008359.1 Olea europaea HOM05D000875 ORTHO05D000684 3.5e-23 112.1 155 46.5
Dinv29377 Davidia involucrata HOM05D000875 ORTHO05D000684 7.8e-23 110.9 123 52.0
COL.COLO4_11103 Corchorus olitorius HOM05D000875 ORTHO05D000684 1.7e-22 109.8 164 43.9
Duzib168G0123 Durio zibethinus HOM05D000875 ORTHO05D000684 2.3e-22 109.4 142 47.9
MD11G1147800 Malus domestica HOM05D000875 ORTHO05D000684 5.1e-22 108.2 161 42.9
Thecc.09G350900 Theobroma cacao HOM05D000875 ORTHO05D000684 5.1e-22 108.2 145 45.5
CiPaw.13G123100 Carya illinoinensis HOM05D000875 ORTHO05D000684 6.6e-22 107.8 143 46.9
Dinv16218 Davidia involucrata HOM05D000875 ORTHO05D000684 8.6e-22 107.5 124 50.8
Nn2g13840 Nelumbo nucifera HOM05D000875 ORTHO05D000684 8.6e-22 107.5 147 44.2
Atru.chr3.3522 Acer truncatum HOM05D000875 ORTHO05D000684 1.1e-21 107.1 147 45.6
vmacro14394 Vaccinium macrocarpon HOM05D000875 ORTHO05D000684 1.1e-21 107.1 124 49.2
Ciclev10028190m.g Citrus clementina HOM05D000875 ORTHO05D000684 1.5e-21 106.7 139 46.0
Oeu007311.1 Olea europaea HOM05D000875 ORTHO05D000684 1.5e-21 106.7 146 44.5
EL10Ac9g22614 Beta vulgaris HOM05D000875 ORTHO05D000684 1.9e-21 106.3 141 45.4
DCAR_015507 Daucus carota HOM05D000875 ORTHO05D000684 1.9e-21 106.3 156 45.5
MD00G1165800 Malus domestica HOM05D000875 ORTHO05D000684 1.9e-21 106.3 153 43.8
MD03G1127100 Malus domestica HOM05D000875 ORTHO05D000684 1.9e-21 106.3 153 43.8
QL01p015125 Quercus lobata HOM05D000875 ORTHO05D000684 1.9e-21 106.3 143 44.1
QL01p015218 Quercus lobata HOM05D000875 ORTHO05D000684 1.9e-21 106.3 143 44.1
TWI79G0879 Tripterygium wilfordii HOM05D000875 ORTHO05D000684 1.9e-21 106.3 123 48.0
MSTRG.17760 Avicennia marina HOM05D000875 ORTHO05D000684 2.5e-21 105.9 156 45.5
Gohir.A03G029200 Gossypium hirsutum HOM05D000875 ORTHO05D000684 3.3e-21 105.5 144 45.8
Gohir.D03G139400 Gossypium hirsutum HOM05D000875 ORTHO05D000684 3.3e-21 105.5 144 45.8
Gorai.003G146100 Gossypium raimondii HOM05D000875 ORTHO05D000684 3.3e-21 105.5 144 45.8
Lalb_Chr24g0394921 Lupinus albus HOM05D000875 ORTHO05D000684 3.3e-21 105.5 145 43.4
Sabra09G0003100 Salix brachista HOM05D000875 ORTHO05D000684 3.3e-21 105.5 157 42.7
CSS0010484 Camellia sinensis var. sinensis HOM05D000875 ORTHO05D000684 4.3e-21 105.1 121 48.8
AUR62014960 Chenopodium quinoa HOM05D000875 ORTHO05D000684 4.3e-21 105.1 149 45.0
Actinidia03693 Actinidia chinensis HOM05D000875 ORTHO05D000684 5.6e-21 104.8 145 44.1
Cpa.g.sc476.3 Carica papaya HOM05D000875 ORTHO05D000684 5.6e-21 104.8 131 48.1
Phvul.005G130600 Phaseolus vulgaris HOM05D000875 ORTHO05D000684 5.6e-21 104.8 141 44.7
Aqoxy2G01668 Aquilegia oxysepala HOM05D000875 ORTHO05D000684 7.3e-21 104.4 155 42.6
Duzib150G0456 Durio zibethinus HOM05D000875 ORTHO05D000684 7.3e-21 104.4 144 45.1
CANSAT25G2534 Cannabis sativa HOM05D000875 ORTHO05D000684 9.6e-21 104.0 157 42.0
AUR62029174 Chenopodium quinoa HOM05D000875 ORTHO05D000684 9.6e-21 104.0 149 45.0
Cc01_g10330 Coffea canephora HOM05D000875 ORTHO05D000684 9.6e-21 104.0 157 44.6
PGR119G1829 Punica granatum HOM05D000875 ORTHO05D000684 9.6e-21 104.0 123 48.8
Sabra04G0147100 Salix brachista HOM05D000875 ORTHO05D000684 1.2e-20 103.6 127 44.9
FAN21G1138 Fragaria x ananassa HOM05D000875 ORTHO05D000684 1.6e-20 103.2 161 42.9
Nn6g35235 Nelumbo nucifera HOM05D000875 ORTHO05D000684 1.6e-20 103.2 163 41.1
TWI31G0905 Tripterygium wilfordii HOM05D000875 ORTHO05D000684 1.6e-20 103.2 135 45.2
TWI75G1353 Tripterygium wilfordii HOM05D000875 ORTHO05D000684 1.6e-20 103.2 123 47.2
unitig_22.g6653 Utricularia gibba HOM05D000875 ORTHO05D000684 1.6e-20 103.2 139 47.5
Duzib170G1168 Durio zibethinus HOM05D000875 ORTHO05D000684 2.1e-20 102.8 148 42.6
Manes.04G013400 Manihot esculenta HOM05D000875 ORTHO05D000684 3.6e-20 102.1 137 45.3
Eucgr.J00387 Eucalyptus grandis HOM05D000875 ORTHO05D000684 4.7e-20 101.7 120 48.3
TAR623G0289 Trochodendron aralioides HOM05D000875 ORTHO05D000684 6.2e-20 101.3 118 50.0
Oeu000600.1 Olea europaea HOM05D000875 ORTHO05D000684 8.1e-20 100.9 155 43.2
MELO3C026950.2 Cucumis melo HOM05D000875 ORTHO05D000684 1.1e-19 100.5 134 47.0
CsaV3_6G014330 Cucumis sativus L. HOM05D000875 ORTHO05D000684 1.1e-19 100.5 134 47.0
FvH4_3g30680 Fragaria vesca HOM05D000875 ORTHO05D000684 1.1e-19 100.5 161 41.6
FAN11G1500 Fragaria x ananassa HOM05D000875 ORTHO05D000684 1.1e-19 100.5 161 41.6
FAN16G0875 Fragaria x ananassa HOM05D000875 ORTHO05D000684 1.1e-19 100.5 121 49.6
Glyma.12G178300 Glycine max HOM05D000875 ORTHO05D000684 1.1e-19 100.5 144 41.7
ClCG02G021560 Citrullus lanatus HOM05D000875 ORTHO05D000684 1.4e-19 100.1 134 47.0
Glyma.13G322200 Glycine max HOM05D000875 ORTHO05D000684 1.4e-19 100.1 139 43.9
Rhsim01G0211000 Rhododendron simsii HOM05D000875 ORTHO05D000684 2.4e-19 99.4 120 47.5
Ca_19319_v3 Cicer arietinum L. HOM05D000875 ORTHO05D000684 3.1e-19 99.0 140 42.9
Gohir.A08G201000 Gossypium hirsutum HOM05D000875 ORTHO05D000684 3.1e-19 99.0 143 44.1
Phvul.005G069000 Phaseolus vulgaris HOM05D000875 ORTHO05D000684 3.1e-19 99.0 160 41.9
Potri.009G005800 Populus trichocarpa HOM05D000875 ORTHO05D000684 3.1e-19 99.0 132 45.5
Migut.N02545 Erythranthe guttata HOM05D000875 ORTHO05D000684 4.0e-19 98.6 141 46.8
FAN25G2615 Fragaria x ananassa HOM05D000875 ORTHO05D000684 4.0e-19 98.6 121 48.8
Lj2A1008T37 Lonicera japonica HOM05D000875 ORTHO05D000684 4.0e-19 98.6 136 44.9
Glyma.12G081000 Glycine max HOM05D000875 ORTHO05D000684 5.2e-19 98.2 160 39.4
Gohir.D08G218200 Gossypium hirsutum HOM05D000875 ORTHO05D000684 5.2e-19 98.2 144 43.1
Gorai.004G232000 Gossypium raimondii HOM05D000875 ORTHO05D000684 5.2e-19 98.2 144 43.1
VMungo1127G1254 Vigna mungo HOM05D000875 ORTHO05D000684 6.8e-19 97.8 154 42.9
Cfa010295 Carpinus fangiana HOM05D000875 ORTHO05D000684 8.9e-19 97.4 120 47.5
ECA233G0178 Erigeron canadensis HOM05D000875 ORTHO05D000684 8.9e-19 97.4 158 41.1
Hma1.2p1_0051F.1_g029430 Hydrangea macrophylla HOM05D000875 ORTHO05D000684 8.9e-19 97.4 122 46.7
RcHm_v2.0_Chr5g0056921 Rosa chinensis HOM05D000875 ORTHO05D000684 8.9e-19 97.4 136 44.9
Haze_23711 Corylus avellana HOM05D000875 ORTHO05D000684 1.2e-18 97.1 120 47.5
Lalb_Chr22g0350401 Lupinus albus HOM05D000875 ORTHO05D000684 1.2e-18 97.1 144 40.3
Sed0017622 Sechium edule HOM05D000875 ORTHO05D000684 1.2e-18 97.1 135 47.4
Sc06g0010810 Simmondsia chinensis HOM05D000875 ORTHO05D000684 1.2e-18 97.1 129 45.0
THA.LOC104800576 Tarenaya hassleriana HOM05D000875 ORTHO05D000684 1.5e-18 96.7 147 40.8
Glyma.11G193000 Glycine max HOM05D000875 ORTHO05D000684 2.0e-18 96.3 160 39.4
Manes.11G152200 Manihot esculenta HOM05D000875 ORTHO05D000684 2.0e-18 96.3 120 46.7
Medtr2g084275 Medicago truncatula HOM05D000875 ORTHO05D000684 2.6e-18 95.9 160 39.4
Lj3g0002642 Lotus japonicus HOM05D000875 ORTHO05D000684 3.4e-18 95.5 161 39.8
Aa31LG5G7990 Aethionema arabicum HOM05D000875 ORTHO05D000684 4.4e-18 95.1 144 43.1
CSS0044092 Camellia sinensis var. sinensis HOM05D000875 ORTHO05D000684 4.4e-18 95.1 123 46.3
CSS0045254 Camellia sinensis var. sinensis HOM05D000875 ORTHO05D000684 4.4e-18 95.1 123 46.3
TPR.G21027 Trifolium pratense HOM05D000875 ORTHO05D000684 5.8e-18 94.7 161 39.1
Potri.004G216200 Populus trichocarpa HOM05D000875 ORTHO05D000684 9.9e-18 94.0 139 41.7
arahy.Tifrunner.gnm1.ann1.62L8X5 Arachis hypogaea HOM05D000875 ORTHO05D000684 1.3e-17 93.6 141 39.7
arahy.Tifrunner.gnm1.ann1.9K9ZRS Arachis hypogaea HOM05D000875 ORTHO05D000684 1.3e-17 93.6 161 39.1
Lsat_1_v5_gn_6_43200 Lactuca sativa HOM05D000875 ORTHO05D000684 1.3e-17 93.6 147 42.9
arahy.Tifrunner.gnm1.ann1.KRI533 Arachis hypogaea HOM05D000875 ORTHO05D000684 1.7e-17 93.2 144 38.2
TPR.G28209 Trifolium pratense HOM05D000875 ORTHO05D000684 1.7e-17 93.2 140 41.4
Psat5g253440 Pisum sativum HOM05D000875 ORTHO05D000684 2.2e-17 92.8 141 41.1
arahy.Tifrunner.gnm1.ann1.00K3B7 Arachis hypogaea HOM05D000875 ORTHO05D000684 2.9e-17 92.4 161 38.5
Lj3g0028131 Lotus japonicus HOM05D000875 ORTHO05D000684 2.9e-17 92.4 161 39.1
PSO339G6584 Papaver somniferum HOM05D000875 ORTHO05D000684 2.9e-17 92.4 138 43.5
PSO801G0239 Papaver somniferum HOM05D000875 ORTHO05D000684 2.9e-17 92.4 137 44.5
Sp4g10960 Schrenkiella parvula HOM05D000875 ORTHO05D000684 3.8e-17 92.0 132 44.7
THA.LOC104816072 Tarenaya hassleriana HOM05D000875 ORTHO05D000684 3.8e-17 92.0 148 40.5
AT2G28150 Arabidopsis thaliana HOM05D000875 ORTHO05D000684 4.9e-17 91.7 143 42.7
Lalb_Chr19g0136931 Lupinus albus HOM05D000875 ORTHO05D000684 4.9e-17 91.7 139 41.7
Thhalv10016498m.g Eutrema salsugineum HOM05D000875 ORTHO05D000684 6.4e-17 91.3 127 44.1
Medtr4g057330 Medicago truncatula HOM05D000875 ORTHO05D000684 6.4e-17 91.3 140 41.4
Carub.0004s0897 Capsella rubella HOM05D000875 ORTHO05D000684 1.4e-16 90.1 132 43.2
Lj1A211T42 Lonicera japonica HOM05D000875 ORTHO05D000684 1.4e-16 90.1 157 39.5
Prupe.6G112400 Prunus persica HOM05D000875 ORTHO05D000684 1.9e-16 89.7 124 43.5
Ca_01708_v3 Cicer arietinum L. HOM05D000875 ORTHO05D000684 2.4e-16 89.4 141 40.4
HanXRQChr13g0396271 Helianthus annuus HOM05D000875 ORTHO05D000684 2.4e-16 89.4 136 42.6
Lalb_Chr01g0004581 Lupinus albus HOM05D000875 ORTHO05D000684 2.4e-16 89.4 135 40.0
SGA_v2.0_scaffold50G18608 Striga asiatica HOM05D000875 ORTHO05D000684 2.4e-16 89.4 134 43.3
MSTRG.18700 Avicennia marina HOM05D000875 ORTHO05D000684 4.2e-16 88.6 151 39.1
HanXRQChr02g0055531 Helianthus annuus HOM05D000875 ORTHO05D000684 7.1e-16 87.8 163 39.3
Psat7g191240 Pisum sativum HOM05D000875 ORTHO05D000684 1.6e-15 86.7 140 39.3
AL4G22000 Arabidopsis lyrata HOM05D000875 ORTHO05D000684 2.1e-15 86.3 123 43.1
BcaC02g10949 Brassica carinata HOM05D000875 ORTHO05D000684 2.1e-15 86.3 126 43.7
A07p18690 Brassica napus HOM05D000875 ORTHO05D000684 2.1e-15 86.3 126 43.7
C04p23360 Brassica napus HOM05D000875 ORTHO05D000684 2.1e-15 86.3 126 43.7
BolC4t23838H Brassica oleracea HOM05D000875 ORTHO05D000684 2.1e-15 86.3 126 43.7
BraA07t29580Z Brassica rapa HOM05D000875 ORTHO05D000684 2.1e-15 86.3 126 43.7
CARHR121000 Cardamine hirsuta HOM05D000875 ORTHO05D000684 3.5e-15 85.5 130 42.3
Lj3g0006705 Lotus japonicus HOM05D000875 ORTHO05D000684 7.8e-15 84.3 162 37.0
BcaB02g10152 Brassica carinata HOM05D000875 ORTHO05D000684 1.3e-14 83.6 133 41.4
unitig_27.g25047 Utricularia gibba HOM05D000875 ORTHO05D000684 1.3e-14 83.6 138 41.3
Hund01426 Selenicereus undatus HOM05D000875 ORTHO05D000684 5.1e-14 81.6 136 36.8
CDE03G0238 Ceratophyllum demersum HOM05D000875 ORTHO05D000684 1.5e-13 80.1 132 41.7
TAR369G1022 Trochodendron aralioides HOM05D000875 ORTHO05D000684 1.9e-13 79.7 160 36.2
HPP92_025961 Vanilla planifolia HOM05D000875 ORTHO05D000684 5.6e-13 78.2 135 39.3
Os03g0692400 Oryza sativa ssp. japonica HOM05D000875 ORTHO05D000684 5.3e-11 71.6 134 35.1
Os08g0561600 Oryza sativa ssp. japonica HOM05D000875 ORTHO05D000684 6.9e-11 71.2 128 38.3
ECA248G1962 Erigeron canadensis HOM05D000875 ORTHO05D000684 2.0e-10 69.7 147 34.7
PGR119G1253 Punica granatum HOM05D000875 ORTHO05D000684 2.0e-10 69.7 64 56.2
unitig_699.g19187 Utricularia gibba HOM05D000875 ORTHO05D000684 6.4e-09 64.7 136 39.7
CDE06G1880 Ceratophyllum demersum HOM05D000875 ORTHO05D000684 3.2e-08 62.4 118 33.9
SalBow6G5923 Salvia bowleyana HOM05D000875 ORTHO05D000684 4.2e-08 62.0 119 37.0
Zm00001eb175850 Zea mays HOM05D000875 ORTHO05D000684 5.4e-08 61.6 143 32.2
Zm00001eb039020 Zea mays HOM05D000875 ORTHO05D000684 9.3e-08 60.8 74 44.6
Lsat_1_v5_gn_1_64580 Lactuca sativa HOM05D000875 ORTHO05D000684 3.5e-07 58.9 125 32.8
Zm00001eb053610 Zea mays HOM05D000875 ORTHO05D000684 4.6e-07 58.5 133 33.1
ATR1145G058 Amborella trichopoda HOM05D000875 ORTHO05D000684 6.0e-07 58.2 113 39.8
MBI05_g35604_MAGBIO Magnolia biondii HOM05D000875 ORTHO05D000684 7.9e-07 57.8 134 34.3


User provided reference genes

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