Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 3.9e-67 258.5 179 100.0
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 1.1e-64 250.4 179 97.2
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 4.0e-64 248.4 179 96.6
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 1.5e-63 246.5 179 96.1
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 8.4e-62 240.7 176 94.3
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 8.4e-62 240.7 176 94.3
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 1.4e-61 240.0 179 91.6
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 6.0e-60 234.6 174 93.1
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 1.3e-57 226.9 176 89.2
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 1.4e-56 223.4 176 82.4
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 5.3e-56 221.5 176 85.2
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 1.2e-55 220.3 174 88.5
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 1.5e-55 219.9 178 85.4
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 3.4e-55 218.8 176 84.7
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 1.7e-54 216.5 174 83.3
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 8.4e-54 214.2 174 83.9
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 4.2e-53 211.8 173 86.7
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 5.5e-53 211.5 174 85.6
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 9.3e-53 210.7 176 78.4
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 1.2e-52 210.3 179 83.2
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 2.1e-52 209.5 176 80.7
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 2.1e-52 209.5 174 75.9
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 2.7e-52 209.1 174 79.9
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 3.5e-52 208.8 174 79.9
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 3.5e-52 208.8 174 81.6
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 6.1e-52 208.0 176 79.0
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 6.1e-52 208.0 174 83.3
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 1.0e-51 207.2 174 82.2
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 1.0e-51 207.2 177 81.4
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 1.3e-51 206.8 174 83.3
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 1.3e-51 206.8 174 81.0
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 1.3e-51 206.8 174 83.3
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 1.8e-51 206.5 175 80.0
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 2.3e-51 206.1 174 81.6
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 3.0e-51 205.7 174 83.9
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 3.0e-51 205.7 175 60.6
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 3.0e-51 205.7 174 82.2
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 5.1e-51 204.9 176 79.0
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 5.1e-51 204.9 176 80.7
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 5.1e-51 204.9 174 81.0
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 6.7e-51 204.5 174 82.8
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 6.7e-51 204.5 176 81.8
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 8.7e-51 204.1 174 83.3
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 8.7e-51 204.1 174 83.3
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 1.1e-50 203.8 179 82.1
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 1.1e-50 203.8 177 81.9
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 1.5e-50 203.4 176 81.8
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 1.5e-50 203.4 174 83.3
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 1.9e-50 203.0 174 79.9
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 1.9e-50 203.0 174 82.2
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 2.5e-50 202.6 174 79.9
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 2.5e-50 202.6 174 78.7
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 3.3e-50 202.2 176 78.4
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 3.3e-50 202.2 174 81.0
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 4.3e-50 201.8 176 58.0
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 9.7e-50 200.7 176 79.0
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 2.2e-49 199.5 176 81.8
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 2.8e-49 199.1 176 82.4
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 6.3e-49 198.0 177 75.1
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 8.2e-49 197.6 180 77.8
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 1.4e-48 196.8 174 81.0
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 1.8e-48 196.4 174 79.3
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 2.4e-48 196.1 176 79.0
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 3.1e-48 195.7 176 81.2
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 3.1e-48 195.7 179 77.7
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 4.1e-48 195.3 176 80.1
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 9.0e-48 194.1 179 78.8
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 9.0e-48 194.1 174 77.0
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 1.5e-47 193.4 179 78.2
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 3.4e-47 192.2 181 74.6
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 1.7e-46 189.9 174 78.7
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 1.7e-46 189.9 179 78.8
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 6.5e-46 188.0 176 77.8
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 6.5e-46 188.0 191 52.4
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 1.4e-45 186.8 174 77.6
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 2.5e-45 186.0 174 79.3
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 2.5e-45 186.0 199 49.7
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 9.4e-45 184.1 175 77.7
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 1.2e-44 183.7 176 56.2
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 1.0e-43 180.6 174 76.4
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 1.0e-43 180.6 174 55.2
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 1.0e-43 180.6 175 75.4
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 1.4e-43 180.3 176 55.1
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 1.4e-43 180.3 176 55.1
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 2.3e-43 179.5 247 44.1
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 3.0e-43 179.1 176 51.1
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 1.1e-42 177.2 176 57.4
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 1.1e-42 177.2 204 63.2
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 9.7e-42 174.1 155 82.6
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 1.3e-41 173.7 159 82.4
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 5.3e-40 168.3 174 48.9
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 6.9e-40 167.9 179 50.3
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 4.5e-39 165.2 175 49.1
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 1.7e-38 163.3 179 72.1
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.9e-38 162.5 84 92.9
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 6.5e-38 161.4 138 91.3
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 1.9e-37 159.8 192 68.2
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 7.2e-37 157.9 174 47.7
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.6e-36 156.8 171 49.7
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 2.7e-36 156.0 173 52.0
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 1.0e-35 154.1 150 52.0
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 2.0e-34 149.8 138 79.0
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 1.1e-32 144.1 177 65.0
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 1.4e-32 143.7 160 73.1
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 1.8e-32 143.3 86 77.9
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 1.0e-30 137.5 138 67.4
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 1.3e-30 137.1 166 68.1
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.7e-30 136.7 166 68.1
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 2.9e-30 136.0 87 75.9
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 5.0e-30 135.2 174 65.5
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.9e-29 133.3 125 74.4
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 4.7e-28 128.6 87 69.0
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 3.3e-26 122.5 86 66.3
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.3e-25 120.6 215 38.1
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 7.7e-23 111.3 120 48.3
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 1.1e-21 107.5 119 48.7
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 5.5e-21 105.1 165 38.8
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 1.8e-19 100.1 128 43.8
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 2.9e-14 82.8 115 37.4
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 3.4e-10 69.3 36 94.4
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 3.4e-10 69.3 36 91.7
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 9.8e-10 67.8 98 40.8
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 2.8e-09 66.2 52 61.5
Nitab4.5_0011078g0030 Nicotiana tabacum HOM05D006436 ORTHO05D008011 4.9e-09 65.5 36 83.3
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 1.6e-07 60.5 36 75.0


User provided reference genes

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