Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G266.1 Capsicum annuum HOM05D004681 ORTHO05D005541 1.2e-163 579.7 284 100.0
Nitab4.5_0000074g0040 Nicotiana tabacum HOM05D004681 ORTHO05D005541 4.0e-42 176.0 161 60.2
Solyc07g009320.3 Solanum lycopersicum HOM05D004681 ORTHO05D005541 1.5e-41 174.1 157 61.1
Sopen07g005070 Solanum pennellii HOM05D004681 ORTHO05D005541 1.5e-41 174.1 157 61.1
PGSC0003DMG400008514 Solanum tuberosum HOM05D004681 ORTHO05D005541 1.0e-40 171.4 157 60.5
CAN.G1668.9 Capsicum annuum HOM05D004681 ORTHO05D005541 1.7e-40 170.6 157 60.5
Nitab4.5_0010281g0010 Nicotiana tabacum HOM05D004681 ORTHO05D005541 4.9e-40 169.1 157 59.2
Peaxi162Scf00324g00718 Petunia axillaris HOM05D004681 ORTHO05D005541 2.3e-37 160.2 157 56.1
Dinv25404 Davidia involucrata HOM05D004681 ORTHO05D005541 2.5e-31 140.2 157 48.4
Lj7A127G13 Lonicera japonica HOM05D004681 ORTHO05D005541 2.1e-30 137.1 162 46.3
CSS0001946 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 4.6e-30 136.0 157 48.4
Dinv26443 Davidia involucrata HOM05D004681 ORTHO05D005541 7.9e-30 135.2 157 47.1
Actinidia06358 Actinidia chinensis HOM05D004681 ORTHO05D005541 1.0e-29 134.8 157 47.1
Cc06_g22600 Coffea canephora HOM05D004681 ORTHO05D005541 1.3e-29 134.4 157 47.1
MSTRG.10452 Avicennia marina HOM05D004681 ORTHO05D005541 2.3e-29 133.7 157 45.2
SalBow7G0268 Salvia bowleyana HOM05D004681 ORTHO05D005541 3.0e-29 133.3 157 46.5
SalBow7G3904 Salvia bowleyana HOM05D004681 ORTHO05D005541 3.0e-29 133.3 157 46.5
CSS0025965 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 3.9e-29 132.9 157 48.4
Actinidia22469 Actinidia chinensis HOM05D004681 ORTHO05D005541 6.7e-29 132.1 157 47.1
HanXRQChr09g0266261 Helianthus annuus HOM05D004681 ORTHO05D005541 7.4e-28 128.6 157 44.6
TWI63G0533 Tripterygium wilfordii HOM05D004681 ORTHO05D005541 7.4e-28 128.6 157 44.6
CiPaw.08G033800 Carya illinoinensis HOM05D004681 ORTHO05D005541 9.7e-28 128.3 155 45.8
CiPaw.07G195100 Carya illinoinensis HOM05D004681 ORTHO05D005541 1.3e-27 127.9 157 45.2
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 1.3e-27 127.9 146 50.0
Thecc.09G181200 Theobroma cacao HOM05D004681 ORTHO05D005541 1.3e-27 127.9 161 44.7
CsaV3_1G031790 Cucumis sativus L. HOM05D004681 ORTHO05D005541 1.6e-27 127.5 156 45.5
GSVIVG01010902001 Vitis vinifera HOM05D004681 ORTHO05D005541 1.6e-27 127.5 157 43.9
COL.COLO4_29315 Corchorus olitorius HOM05D004681 ORTHO05D005541 2.8e-27 126.7 169 42.6
Sed0004411 Sechium edule HOM05D004681 ORTHO05D005541 3.7e-27 126.3 160 42.5
Sc14g0001370 Simmondsia chinensis HOM05D004681 ORTHO05D005541 3.7e-27 126.3 157 45.9
Cfa013431 Carpinus fangiana HOM05D004681 ORTHO05D005541 6.3e-27 125.6 161 43.5
ClCG06G013520 Citrullus lanatus HOM05D004681 ORTHO05D005541 6.3e-27 125.6 156 44.9
MELO3C017439.2 Cucumis melo HOM05D004681 ORTHO05D005541 8.2e-27 125.2 156 44.9
Duzib170G0205 Durio zibethinus HOM05D004681 ORTHO05D005541 1.1e-26 124.8 157 43.9
Oeu000976.1 Olea europaea HOM05D004681 ORTHO05D005541 1.1e-26 124.8 161 42.9
CAN.G609.4 Capsicum annuum HOM05D004681 ORTHO05D005541 1.8e-26 124.0 88 70.5
Duzib168G0714 Durio zibethinus HOM05D004681 ORTHO05D005541 2.4e-26 123.6 157 43.9
Atru.chr7.819 Acer truncatum HOM05D004681 ORTHO05D005541 5.3e-26 122.5 157 43.3
Ah.09g230170 Amaranthus hybridus HOM05D004681 ORTHO05D005541 5.3e-26 122.5 157 44.6
Potri.018G147625 Populus trichocarpa HOM05D004681 ORTHO05D005541 9.0e-26 121.7 130 50.8
CANSAT11G1051 Cannabis sativa HOM05D004681 ORTHO05D005541 1.2e-25 121.3 157 43.9
ECA232G3088 Erigeron canadensis HOM05D004681 ORTHO05D005541 1.5e-25 120.9 157 42.0
Eucgr.C00132 Eucalyptus grandis HOM05D004681 ORTHO05D005541 2.0e-25 120.6 164 43.9
Gohir.A08G017900 Gossypium hirsutum HOM05D004681 ORTHO05D005541 2.0e-25 120.6 157 42.7
Gohir.D08G028500 Gossypium hirsutum HOM05D004681 ORTHO05D005541 2.0e-25 120.6 157 42.7
PSO079G0045 Papaver somniferum HOM05D004681 ORTHO05D005541 2.0e-25 120.6 159 44.0
SGA_v2.0_scaffold41G15864 Striga asiatica HOM05D004681 ORTHO05D005541 3.4e-25 119.8 157 42.0
PSO423G0181 Papaver somniferum HOM05D004681 ORTHO05D005541 5.9e-25 119.0 163 42.3
RcHm_v2.0_Chr4g0400191 Rosa chinensis HOM05D004681 ORTHO05D005541 5.9e-25 119.0 157 43.3
AUR62033246 Chenopodium quinoa HOM05D004681 ORTHO05D005541 7.7e-25 118.6 157 43.3
Aqoxy7G02735 Aquilegia oxysepala HOM05D004681 ORTHO05D005541 1.7e-24 117.5 168 42.9
EL10Ac8g18317 Beta vulgaris HOM05D004681 ORTHO05D005541 1.7e-24 117.5 157 43.3
QL12p032381 Quercus lobata HOM05D004681 ORTHO05D005541 2.2e-24 117.1 164 40.2
Rhsim13G0200500 Rhododendron simsii HOM05D004681 ORTHO05D005541 2.9e-24 116.7 211 37.4
Gorai.004G025600 Gossypium raimondii HOM05D004681 ORTHO05D005541 3.8e-24 116.3 168 39.9
Hund09046 Selenicereus undatus HOM05D004681 ORTHO05D005541 3.8e-24 116.3 157 43.9
Ciclev10008916m.g Citrus clementina HOM05D004681 ORTHO05D005541 1.1e-23 114.8 160 40.0
CARHR109600 Cardamine hirsuta HOM05D004681 ORTHO05D005541 2.5e-23 113.6 157 38.9
Manes.14G161401 Manihot esculenta HOM05D004681 ORTHO05D005541 2.5e-23 113.6 157 40.1
Cpa.g.sc95.29 Carica papaya HOM05D004681 ORTHO05D005541 3.2e-23 113.2 157 40.1
Manes.04G060300 Manihot esculenta HOM05D004681 ORTHO05D005541 3.2e-23 113.2 157 40.1
Potri.018G145508 Populus trichocarpa HOM05D004681 ORTHO05D005541 3.2e-23 113.2 161 41.6
PGR044G2653 Punica granatum HOM05D004681 ORTHO05D005541 3.2e-23 113.2 157 43.9
Aa31LG8G16140 Aethionema arabicum HOM05D004681 ORTHO05D005541 7.2e-23 112.1 157 38.9
arahy.Tifrunner.gnm1.ann1.K04ERL Arachis hypogaea HOM05D004681 ORTHO05D005541 7.2e-23 112.1 165 40.6
Prupe.1G079200 Prunus persica HOM05D004681 ORTHO05D005541 1.2e-22 111.3 157 40.1
arahy.Tifrunner.gnm1.ann1.L4KBSE Arachis hypogaea HOM05D004681 ORTHO05D005541 2.1e-22 110.5 165 40.0
MBI13_g31546_MAGBIO Magnolia biondii HOM05D004681 ORTHO05D005541 2.1e-22 110.5 154 40.9
BcaB07g31622 Brassica carinata HOM05D004681 ORTHO05D005541 2.7e-22 110.2 157 38.2
RcHm_v2.0_Chr7g0191541 Rosa chinensis HOM05D004681 ORTHO05D005541 2.7e-22 110.2 157 40.8
BcaC06g36518 Brassica carinata HOM05D004681 ORTHO05D005541 3.6e-22 109.8 157 37.6
C09p14440 Brassica napus HOM05D004681 ORTHO05D005541 3.6e-22 109.8 208 33.2
BraA09t36865Z Brassica rapa HOM05D004681 ORTHO05D005541 3.6e-22 109.8 208 33.2
BcaC04g22869 Brassica carinata HOM05D004681 ORTHO05D005541 4.6e-22 109.4 157 37.6
A09p12190 Brassica napus HOM05D004681 ORTHO05D005541 4.6e-22 109.4 157 37.6
AL3G52840 Arabidopsis lyrata HOM05D004681 ORTHO05D005541 6.1e-22 109.0 161 36.6
Sabra06G0058400 Salix brachista HOM05D004681 ORTHO05D005541 6.1e-22 109.0 161 39.8
Haze_21984 Corylus avellana HOM05D004681 ORTHO05D005541 7.9e-22 108.6 117 52.1
A07p01650 Brassica napus HOM05D004681 ORTHO05D005541 1.0e-21 108.2 157 36.9
BraA07t27967Z Brassica rapa HOM05D004681 ORTHO05D005541 1.0e-21 108.2 157 36.9
Migut.L01897 Erythranthe guttata HOM05D004681 ORTHO05D005541 1.0e-21 108.2 157 41.4
Thhalv10022785m.g Eutrema salsugineum HOM05D004681 ORTHO05D005541 1.0e-21 108.2 157 37.6
FvH4_4g07590 Fragaria vesca HOM05D004681 ORTHO05D005541 1.4e-21 107.8 159 41.5
Glyma.13G099400 Glycine max HOM05D004681 ORTHO05D005541 1.8e-21 107.5 162 40.7
BcaB03g16704 Brassica carinata HOM05D004681 ORTHO05D005541 2.3e-21 107.1 157 38.2
C07p03410 Brassica napus HOM05D004681 ORTHO05D005541 2.3e-21 107.1 157 36.9
BolC7t40740H Brassica oleracea HOM05D004681 ORTHO05D005541 2.3e-21 107.1 157 36.9
BolC9t54347H Brassica oleracea HOM05D004681 ORTHO05D005541 2.3e-21 107.1 158 36.7
FAN17G0253 Fragaria x ananassa HOM05D004681 ORTHO05D005541 3.0e-21 106.7 159 40.9
FAN22G1928 Fragaria x ananassa HOM05D004681 ORTHO05D005541 3.0e-21 106.7 159 40.3
Potri.006G077100 Populus trichocarpa HOM05D004681 ORTHO05D005541 3.9e-21 106.3 161 39.1
THA.LOC104819968 Tarenaya hassleriana HOM05D004681 ORTHO05D005541 3.9e-21 106.3 158 38.6
FAN12G2798 Fragaria x ananassa HOM05D004681 ORTHO05D005541 5.1e-21 105.9 159 40.9
AT2G19080 Arabidopsis thaliana HOM05D004681 ORTHO05D005541 8.8e-21 105.1 161 36.0
Lsat_1_v5_gn_4_183080 Lactuca sativa HOM05D004681 ORTHO05D005541 8.8e-21 105.1 150 39.3
HanXRQChr10g0297571 Helianthus annuus HOM05D004681 ORTHO05D005541 1.1e-20 104.8 143 40.6
MD13G1245600 Malus domestica HOM05D004681 ORTHO05D005541 1.1e-20 104.8 157 38.2
SGA_v2.0_scaffold21G09637 Striga asiatica HOM05D004681 ORTHO05D005541 1.1e-20 104.8 157 40.8
Glyma.17G060700 Glycine max HOM05D004681 ORTHO05D005541 1.5e-20 104.4 163 39.9
HanXRQChr04g0105751 Helianthus annuus HOM05D004681 ORTHO05D005541 4.3e-20 102.8 139 40.3
Lj6g0005497 Lotus japonicus HOM05D004681 ORTHO05D005541 4.3e-20 102.8 161 39.8
Sp3g32480 Schrenkiella parvula HOM05D004681 ORTHO05D005541 5.7e-20 102.4 157 34.4
Carub.0003s3332 Capsella rubella HOM05D004681 ORTHO05D005541 9.7e-20 101.7 157 35.7
Glyma.09G057900 Glycine max HOM05D004681 ORTHO05D005541 1.7e-19 100.9 161 38.5
Lj4g0016729 Lotus japonicus HOM05D004681 ORTHO05D005541 1.7e-19 100.9 162 38.9
Phvul.009G237800 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 4.8e-19 99.4 161 38.5
Lalb_Chr12g0199511 Lupinus albus HOM05D004681 ORTHO05D005541 6.3e-19 99.0 164 38.4
VMungo1309G2393 Vigna mungo HOM05D004681 ORTHO05D005541 6.3e-19 99.0 161 37.9
Phvul.003G142900 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 1.4e-18 97.8 162 37.7
unitig_578.g16069 Utricularia gibba HOM05D004681 ORTHO05D005541 1.4e-18 97.8 157 39.5
Glyma.15G164000 Glycine max HOM05D004681 ORTHO05D005541 1.8e-18 97.4 161 37.3
Medtr2g036910 Medicago truncatula HOM05D004681 ORTHO05D005541 1.8e-18 97.4 161 36.6
VMungo1215G0406 Vigna mungo HOM05D004681 ORTHO05D005541 2.4e-18 97.1 162 37.0
ATR0626G278 Amborella trichopoda HOM05D004681 ORTHO05D005541 4.1e-18 96.3 156 36.5
vmacro23062 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 6.9e-18 95.5 90 53.3
Ca_02042_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 9.1e-18 95.1 161 37.3
Lalb_Chr15g0084091 Lupinus albus HOM05D004681 ORTHO05D005541 1.2e-17 94.7 160 37.5
Psat0s736g0040 Pisum sativum HOM05D004681 ORTHO05D005541 2.0e-17 94.0 161 36.6
Psat1g145840 Pisum sativum HOM05D004681 ORTHO05D005541 4.5e-17 92.8 159 37.1
TPR.G5388 Trifolium pratense HOM05D004681 ORTHO05D005541 5.9e-17 92.4 161 35.4
HPP92_004723 Vanilla planifolia HOM05D004681 ORTHO05D005541 7.7e-17 92.0 169 36.1
Medtr4g127630 Medicago truncatula HOM05D004681 ORTHO05D005541 1.0e-16 91.7 162 37.0
Os06g0168000 Oryza sativa ssp. japonica HOM05D004681 ORTHO05D005541 2.9e-16 90.1 158 36.7
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 5.0e-16 89.4 78 51.3
TPR.G9028 Trifolium pratense HOM05D004681 ORTHO05D005541 5.0e-16 89.4 161 36.0
arahy.Tifrunner.gnm1.ann1.KM341F Arachis hypogaea HOM05D004681 ORTHO05D005541 3.2e-15 86.7 160 35.6
arahy.Tifrunner.gnm1.ann1.LX7F61 Arachis hypogaea HOM05D004681 ORTHO05D005541 3.2e-15 86.7 160 35.6
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 7.2e-15 85.5 160 33.8
TAR636G1425 Trochodendron aralioides HOM05D004681 ORTHO05D005541 1.3e-11 74.7 110 40.9
CAN.G497.61 Capsicum annuum HOM05D004681 ORTHO05D005541 8.2e-11 72.0 109 44.0
CDE06G1906 Ceratophyllum demersum HOM05D004681 ORTHO05D005541 1.1e-10 71.6 133 35.3
AUR62021331 Chenopodium quinoa HOM05D004681 ORTHO05D005541 3.1e-10 70.1 117 36.8
Pp3c12_12510 Physcomitrium patens HOM05D004681 ORTHO05D005541 2.0e-09 67.4 154 29.9
QL05p087685 Quercus lobata HOM05D004681 ORTHO05D005541 2.0e-09 67.4 136 35.3
Pp3c4_10660 Physcomitrium patens HOM05D004681 ORTHO05D005541 7.7e-09 65.5 154 28.6
Nn2g12745 Nelumbo nucifera HOM05D004681 ORTHO05D005541 1.0e-08 65.1 49 63.3
Ca_02046_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 2.2e-08 63.9 73 46.6
Zm00001eb375500 Zea mays HOM05D004681 ORTHO05D005541 2.9e-08 63.5 138 33.3
Mapoly0001s0301 Marchantia polymorpha HOM05D004681 ORTHO05D005541 6.5e-08 62.4 157 30.6
Potri.001G065336 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.1e-06 57.4 114 35.1
AagrBONN_evm.TU.Sc2ySwM_228.4196 Anthoceros agrestis HOM05D004681 ORTHO05D005541 2.7e-06 57.0 158 29.1


User provided reference genes

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