Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 2.0e-144 515.8 258 100.0
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 1.2e-96 357.1 233 80.7
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 8.3e-95 350.9 259 72.2
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 1.4e-94 350.1 258 74.0
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 6.6e-92 341.3 221 81.9
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 5.2e-89 331.6 254 72.4
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 3.5e-85 318.9 227 73.6
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 3.9e-84 315.5 193 81.3
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 5.6e-83 311.6 194 80.9
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 9.6e-83 310.8 189 81.0
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 9.6e-83 310.8 224 71.9
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 1.2e-82 310.5 244 67.2
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 1.6e-82 310.1 181 84.5
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 4.7e-82 308.5 223 72.2
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 6.2e-82 308.1 234 67.9
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 6.2e-82 308.1 190 79.5
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 4.0e-81 305.4 201 76.1
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 2.6e-80 302.8 229 69.4
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 3.4e-80 302.4 229 69.0
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 9.9e-80 300.8 226 70.4
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 1.7e-79 300.1 174 83.3
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 6.4e-79 298.1 235 67.7
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 8.4e-79 297.7 187 78.1
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 8.4e-79 297.7 200 76.0
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 2.4e-78 296.2 240 65.4
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 2.4e-78 296.2 240 65.4
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 5.4e-78 295.0 243 65.0
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 9.3e-78 294.3 196 75.5
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 1.2e-77 293.9 193 76.7
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 3.5e-77 292.4 214 71.5
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 6.0e-77 291.6 193 76.7
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 1.7e-76 290.0 200 74.5
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 1.7e-76 290.0 181 76.8
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 8.7e-76 287.7 193 75.6
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 8.7e-76 287.7 193 75.6
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 8.7e-76 287.7 193 75.6
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 3.3e-75 285.8 233 67.8
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 3.3e-75 285.8 189 73.5
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 2.8e-74 282.7 200 73.5
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 8.1e-74 281.2 184 76.6
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 3.1e-73 279.3 226 65.5
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 4.0e-73 278.9 235 64.3
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 6.9e-73 278.1 244 63.1
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 2.6e-72 276.2 189 74.6
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 2.6e-72 276.2 189 75.1
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 2.6e-72 276.2 189 74.1
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 3.4e-72 275.8 191 75.9
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 4.4e-72 275.4 163 81.0
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 5.8e-72 275.0 210 69.5
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 7.6e-72 274.6 235 63.0
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 1.3e-71 273.9 189 74.6
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 1.7e-71 273.5 213 68.1
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 2.9e-71 272.7 186 72.0
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 3.8e-71 272.3 193 73.1
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 4.9e-71 271.9 278 57.6
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 6.4e-71 271.6 185 74.1
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 1.1e-70 270.8 216 66.2
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 1.9e-70 270.0 200 71.0
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 3.2e-70 269.2 190 71.6
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 4.2e-70 268.9 220 65.5
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 2.7e-69 266.2 250 61.2
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 3.5e-69 265.8 236 61.0
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 6.0e-69 265.0 208 64.4
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 1.0e-68 264.2 193 70.5
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 1.3e-68 263.8 188 72.3
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 1.3e-68 263.8 186 73.1
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 3.0e-68 262.7 196 67.9
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 3.9e-68 262.3 196 67.9
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 8.7e-68 261.2 227 61.2
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 3.3e-67 259.2 179 73.2
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 3.3e-67 259.2 213 64.8
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 4.3e-67 258.8 209 63.6
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 5.6e-67 258.5 179 73.2
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 9.6e-67 257.7 179 72.6
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 9.6e-67 257.7 179 72.6
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 9.6e-67 257.7 188 70.7
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 9.6e-67 257.7 191 70.2
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 1.3e-66 257.3 264 56.4
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 3.6e-66 255.8 192 68.2
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 4.8e-66 255.4 200 67.0
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 8.1e-66 254.6 188 69.7
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 8.1e-66 254.6 179 72.1
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 2.4e-65 253.1 188 69.7
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 3.1e-65 252.7 188 69.1
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 3.1e-65 252.7 179 71.5
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 5.3e-65 251.9 194 66.5
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 6.9e-65 251.5 242 57.9
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 5.8e-64 248.4 189 67.7
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 9.9e-64 247.7 192 64.6
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.3e-63 247.3 196 66.8
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 4.2e-62 242.3 190 66.8
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 7.9e-61 238.0 235 56.6
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 1.8e-60 236.9 191 63.4
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 8.7e-60 234.6 267 52.4
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 2.5e-59 233.0 202 62.9
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 4.3e-59 232.3 193 63.2
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 5.6e-59 231.9 217 58.5
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 1.3e-58 230.7 225 58.2
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 1.8e-57 226.9 245 54.3
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 2.4e-57 226.5 234 54.3
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 4.0e-57 225.7 195 61.5
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 1.0e-55 221.1 129 82.2
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 1.3e-50 204.1 211 54.0
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 2.1e-50 203.4 134 73.1
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 6.9e-49 198.4 177 59.9
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 3.9e-44 182.6 146 73.3
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 2.2e-39 166.8 223 44.8
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 3.8e-39 166.0 96 82.3
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 5.7e-35 152.1 160 54.4
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 7.4e-35 151.8 185 44.3
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 1.3e-34 151.0 138 60.9
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 1.4e-33 147.5 134 64.2
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 2.6e-27 126.7 96 68.8
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 4.1e-25 119.4 172 43.6
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 2.2e-23 113.6 170 38.8
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 4.2e-22 109.4 84 66.7
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 9.7e-19 98.2 149 43.6
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 7.2e-14 82.0 98 52.0
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 8.0e-13 78.6 84 57.1
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 8.0e-13 78.6 102 39.2
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 8.8e-12 75.1 151 32.5
SalBow6G1357 Salvia bowleyana HOM05D003575 ORTHO05D003587 1.3e-07 61.2 39 74.4
RcHm_v2.0_Chr6g0279701 Rosa chinensis HOM05D006234 ORTHO05D007813 5.0e-07 59.3 55 58.2
CAN.G164.3 Capsicum annuum HOM05D006234 ORTHO05D007813 1.1e-06 58.2 28 96.4
SalBow3G0890 Salvia bowleyana HOM05D001251 ORTHO05D007813 1.5e-06 57.8 30 86.7
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 4.2e-06 56.2 32 75.0


User provided reference genes

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