Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G262.8 Capsicum annuum HOM05D000533 ORTHO05D002807 2.6e-56 221.9 116 100.0
Solyc00g500041.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 3.8e-39 164.9 105 85.7
Solyc00g500086.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 3.8e-39 164.9 105 85.7
Solyc00g500123.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 3.8e-39 164.9 105 85.7
Solyc00g500193.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 3.8e-39 164.9 105 85.7
CAN.G1045.10 Capsicum annuum HOM05D000533 ORTHO05D002807 8.5e-39 163.7 104 86.5
PGSC0003DMG402008783 Solanum tuberosum HOM05D000533 ORTHO05D002807 8.5e-39 163.7 105 84.8
CAN.G1470.9 Capsicum annuum HOM05D000533 ORTHO05D002807 3.2e-38 161.8 104 85.6
CAN.G965.4 Capsicum annuum HOM05D000533 ORTHO05D002807 4.2e-38 161.4 104 85.6
CAN.G1526.1 Capsicum annuum HOM05D000533 ORTHO05D002807 5.5e-38 161.0 104 85.6
BraSC25t45913Z Brassica rapa HOM05D000533 ORTHO05D002807 1.2e-37 159.8 111 77.5
CAN.G1298.18 Capsicum annuum HOM05D000533 ORTHO05D002807 3.6e-37 158.3 104 83.7
Sopen02g002710 Solanum pennellii HOM05D000533 ORTHO05D002807 3.6e-37 158.3 106 81.1
BolSC45t60906H Brassica oleracea HOM05D000533 ORTHO05D002807 3.0e-36 155.2 110 76.4
Nitab4.5_0000660g0060 Nicotiana tabacum HOM05D000533 ORTHO05D002807 3.9e-36 154.8 105 82.9
CAN.G30.8 Capsicum annuum HOM05D000533 ORTHO05D002807 5.1e-36 154.5 104 80.8
CAN.G127.11 Capsicum annuum HOM05D000533 ORTHO05D002807 7.4e-35 150.6 104 78.8
Nitab4.5_0006502g0040 Nicotiana tabacum HOM05D000533 ORTHO05D002807 1.3e-34 149.8 105 82.9
Migut.D01248 Erythranthe guttata HOM05D000533 ORTHO05D001069 2.8e-34 148.7 104 77.9
Sed0004290 Sechium edule HOM05D000533 ORTHO05D002807 2.8e-34 148.7 104 77.9
Sed0023589 Sechium edule HOM05D000533 ORTHO05D002807 2.8e-34 148.7 104 77.9
Sed0023659 Sechium edule HOM05D000533 ORTHO05D002807 2.8e-34 148.7 104 77.9
Hma1.2p1_0660F.1_g197440 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 1.4e-33 146.4 104 78.8
Hma1.2p1_2753F.1_g327925 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 1.4e-33 146.4 104 78.8
MELO3C027055.2 Cucumis melo HOM05D000533 ORTHO05D002807 3.1e-33 145.2 104 76.9
DCAR_032541 Daucus carota HOM05D000533 ORTHO05D002807 3.1e-33 145.2 104 77.9
Ah.10g027030 Amaranthus hybridus HOM05D000533 ORTHO05D002807 4.1e-33 144.8 104 76.9
RcHm_v2.0_Chr3g0470801 Rosa chinensis HOM05D000533 ORTHO05D002807 4.1e-33 144.8 104 75.0
Lju5009P0T26 Lonicera japonica HOM05D000533 ORTHO05D002807 5.3e-33 144.4 104 76.9
EL10Ac6g14288 Beta vulgaris HOM05D000533 ORTHO05D002807 7.0e-33 144.1 104 77.9
EL10As15g24097 Beta vulgaris HOM05D000533 ORTHO05D002807 7.0e-33 144.1 104 77.9
vmacro22393 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 1.2e-32 143.3 104 75.0
vmacro22419 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 1.2e-32 143.3 104 75.0
FAN01G2990 Fragaria x ananassa HOM05D000533 ORTHO05D002807 1.5e-32 142.9 104 74.0
HanXRQChr00c0336g0573691 Helianthus annuus HOM05D000533 ORTHO05D002807 1.5e-32 142.9 104 76.9
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-32 142.9 104 76.9
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-32 142.9 104 76.9
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-32 142.9 104 76.9
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-32 142.9 104 76.9
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-32 142.9 104 76.9
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-32 142.9 104 76.9
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-32 142.9 104 76.9
PGR111G0022 Punica granatum HOM05D000533 ORTHO05D002807 1.5e-32 142.9 104 75.0
AL9U11959 Arabidopsis lyrata HOM05D000533 ORTHO05D002807 2.0e-32 142.5 101 78.2
ATCG01100 Arabidopsis thaliana HOM05D000533 ORTHO05D002807 2.0e-32 142.5 101 78.2
CARHR282470 Cardamine hirsuta HOM05D000533 ORTHO05D002807 2.0e-32 142.5 101 78.2
GSVIVG01012613001 Vitis vinifera HOM05D000533 ORTHO05D001069 2.6e-32 142.1 104 75.0
C05p53830 Brassica napus HOM05D000533 ORTHO05D002807 7.7e-32 140.6 101 77.2
C09p40310 Brassica napus HOM05D000533 ORTHO05D002807 7.7e-32 140.6 101 77.2
BraSC103t45432Z Brassica rapa HOM05D000533 ORTHO05D002807 7.7e-32 140.6 101 77.2
BraSC143t45657Z Brassica rapa HOM05D000533 ORTHO05D002807 7.7e-32 140.6 101 77.2
BraSC59t46529Z Brassica rapa HOM05D000533 ORTHO05D002807 7.7e-32 140.6 101 77.2
Nn064s42206 Nelumbo nucifera HOM05D000533 ORTHO05D002807 7.7e-32 140.6 104 75.0
SalBow1G0006 Salvia bowleyana HOM05D000533 ORTHO05D002807 7.7e-32 140.6 104 73.1
C02p28820 Brassica napus HOM05D000533 ORTHO05D002807 1.7e-31 139.4 102 74.5
BolC2t08927H Brassica oleracea HOM05D000533 ORTHO05D002807 1.7e-31 139.4 102 74.5
BolC2t10600H Brassica oleracea HOM05D000533 ORTHO05D002807 2.9e-31 138.7 102 75.5
arahy.Tifrunner.gnm1.ann1.1262SD Arachis hypogaea HOM05D000533 ORTHO05D002807 3.8e-31 138.3 101 73.3
arahy.Tifrunner.gnm1.ann1.510BCU Arachis hypogaea HOM05D000533 ORTHO05D002807 3.8e-31 138.3 101 73.3
Gohir.A01G139542 Gossypium hirsutum HOM05D000533 ORTHO05D002807 3.8e-31 138.3 100 75.0
BolSC35t60689H Brassica oleracea HOM05D000533 ORTHO05D002807 5.0e-31 137.9 101 76.2
BolSC44t60825H Brassica oleracea HOM05D000533 ORTHO05D002807 5.0e-31 137.9 101 76.2
BolSC46t60955H Brassica oleracea HOM05D000533 ORTHO05D002807 5.0e-31 137.9 101 76.2
BolSC47t61062H Brassica oleracea HOM05D000533 ORTHO05D002807 5.0e-31 137.9 101 76.2
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 5.0e-31 137.9 104 75.0
arahy.Tifrunner.gnm1.ann1.840LER Arachis hypogaea HOM05D000533 ORTHO05D002807 6.5e-31 137.5 101 73.3
Lj2C1238G35 Lonicera japonica HOM05D000533 ORTHO05D001069 6.5e-31 137.5 96 77.1
BolC9t56913H Brassica oleracea HOM05D000533 ORTHO05D002807 8.5e-31 137.1 101 75.2
Oeu012820.1 Olea europaea HOM05D000533 ORTHO05D002807 8.5e-31 137.1 104 73.1
ATR0924G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 2.5e-30 135.6 92 76.1
PSO548G0012 Papaver somniferum HOM05D000533 ORTHO05D002807 3.2e-30 135.2 104 71.2
Gorai.005G106600 Gossypium raimondii HOM05D000533 ORTHO05D002807 4.2e-30 134.8 101 74.3
Lalb_Chr07g0191821 Lupinus albus HOM05D000533 ORTHO05D001069 5.5e-30 134.4 104 71.2
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 5.5e-30 134.4 104 71.2
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 5.5e-30 134.4 104 71.2
Gohir.A06G090050 Gossypium hirsutum HOM05D000533 ORTHO05D002807 7.2e-30 134.0 101 71.3
Solyc11g021233.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 1.2e-29 133.3 105 71.4
Gohir.D02G093940 Gossypium hirsutum HOM05D000533 ORTHO05D002807 2.1e-29 132.5 101 73.3
Psat0s1160g0400 Pisum sativum HOM05D000533 ORTHO05D002807 2.1e-29 132.5 104 68.3
Psat0s6989g0240 Pisum sativum HOM05D000533 ORTHO05D001069 2.1e-29 132.5 104 68.3
Psat1g050080 Pisum sativum HOM05D000533 ORTHO05D001069 2.1e-29 132.5 104 68.3
Psat3g095040 Pisum sativum HOM05D000533 ORTHO05D001069 2.1e-29 132.5 104 68.3
Psat7g150960 Pisum sativum HOM05D000533 ORTHO05D001069 2.1e-29 132.5 104 68.3
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 2.7e-29 132.1 104 70.2
Sabra10G0056200 Salix brachista HOM05D000533 ORTHO05D001069 2.7e-29 132.1 92 73.9
SabraPtG0005900 Salix brachista HOM05D000533 ORTHO05D001069 2.7e-29 132.1 92 73.9
Psat4g172360 Pisum sativum HOM05D000533 ORTHO05D002807 4.7e-29 131.3 104 68.3
Gohir.1Z049694 Gossypium hirsutum HOM05D000533 ORTHO05D001069 8.0e-29 130.6 92 73.9
Ah.10g027260 Amaranthus hybridus HOM05D000533 ORTHO05D001069 1.0e-28 130.2 99 70.7
Ah.10g027700 Amaranthus hybridus HOM05D000533 ORTHO05D001069 1.0e-28 130.2 99 70.7
Psat1g104960 Pisum sativum HOM05D000533 ORTHO05D002807 1.0e-28 130.2 105 65.7
Potri.013G074800 Populus trichocarpa HOM05D000533 ORTHO05D002807 1.0e-28 130.2 106 71.7
Gohir.D04G093016 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.8e-28 129.4 114 64.0
Gohir.A04G053078 Gossypium hirsutum HOM05D000533 ORTHO05D001069 2.3e-28 129.0 92 75.0
Gohir.D11G334151 Gossypium hirsutum HOM05D000533 ORTHO05D001069 3.9e-28 128.3 92 72.8
Medtr0002s0150 Medicago truncatula HOM05D000533 ORTHO05D001069 3.9e-28 128.3 103 67.0
AUR62015545 Chenopodium quinoa HOM05D000533 ORTHO05D001069 5.2e-28 127.9 90 75.6
ATR0043G018 Amborella trichopoda HOM05D000533 ORTHO05D001069 6.7e-28 127.5 95 71.6
LjContig00318g0007609 Lotus japonicus HOM05D000533 ORTHO05D002807 6.7e-28 127.5 104 66.3
LjContig00319g0005103 Lotus japonicus HOM05D000533 ORTHO05D002807 6.7e-28 127.5 104 66.3
Psat0s411g0120 Pisum sativum HOM05D000533 ORTHO05D002807 6.7e-28 127.5 104 65.4
SEGI_20811 Sequoiadendron giganteum HOM05D000533 ORTHO05D002807 1.5e-27 126.3 105 63.8
Gorai.009G395200 Gossypium raimondii HOM05D000533 ORTHO05D002807 2.0e-27 125.9 104 68.3
Medtr3g113820 Medicago truncatula HOM05D000533 ORTHO05D002807 3.3e-27 125.2 96 71.9
CSS0030738 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D001069 4.8e-26 121.3 104 67.3
Gorai.003G091000 Gossypium raimondii HOM05D000533 ORTHO05D002807 1.4e-25 119.8 95 69.5
Gohir.D08G207450 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.8e-25 119.4 96 69.8
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 5.3e-25 117.9 83 74.7
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 7.0e-25 117.5 90 74.4
Lsat_1_v5_gn_5_65981 Lactuca sativa HOM05D000533 ORTHO05D001069 9.1e-25 117.1 89 74.2
Psat0s1586g0320 Pisum sativum HOM05D000533 ORTHO05D002807 9.1e-25 117.1 95 66.3
MELO3C031836.2 Cucumis melo HOM05D000533 ORTHO05D002807 1.2e-24 116.7 93 67.7
Solyc02g011800.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 1.0e-23 113.6 107 65.4
Lsat_1_v5_gn_8_103040 Lactuca sativa HOM05D000533 ORTHO05D002807 1.7e-23 112.8 99 68.7
HanXRQChr01g0000271 Helianthus annuus HOM05D000533 ORTHO05D001069 3.8e-23 111.7 104 66.3
BolSC35t60707H Brassica oleracea HOM05D000533 ORTHO05D002807 8.5e-23 110.5 81 72.8
Lj2C1229T2 Lonicera japonica HOM05D000533 ORTHO05D002807 2.5e-22 109.0 81 75.3
Psat0s1160g0320 Pisum sativum HOM05D000533 ORTHO05D001069 5.5e-22 107.8 152 46.1
Nn7g37744 Nelumbo nucifera HOM05D000533 ORTHO05D002807 1.2e-21 106.7 75 74.7
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 3.6e-21 105.1 104 60.6
Gohir.D06G147033 Gossypium hirsutum HOM05D000533 ORTHO05D002807 4.7e-21 104.8 83 67.5
Psat6g182640 Pisum sativum HOM05D000533 ORTHO05D002807 1.4e-20 103.2 75 68.0
Lsat_1_v5_gn_1_58461 Lactuca sativa HOM05D000533 ORTHO05D002807 4.4e-19 98.2 93 61.3
Nitab4.5_0007400g0060 Nicotiana tabacum HOM05D000533 ORTHO05D002807 6.3e-18 94.4 105 59.0
SMO086G0018 Selaginella moellendorffii HOM05D000533 ORTHO05D002807 2.7e-16 89.0 85 55.3
Gohir.D11G339850 Gossypium hirsutum HOM05D000533 ORTHO05D002807 4.5e-16 88.2 77 66.2
Nitab4.5_0006409g0090 Nicotiana tabacum HOM05D000533 ORTHO05D002807 7.7e-16 87.4 76 72.4
HanXRQChr01g0020051 Helianthus annuus HOM05D000533 ORTHO05D002807 1.7e-15 86.3 60 78.3
Gorai.007G369400 Gossypium raimondii HOM05D000533 ORTHO05D002807 2.2e-15 85.9 77 63.6
Sed0023687 Sechium edule HOM05D000533 ORTHO05D002807 7.2e-14 80.9 49 77.6
Nitab4.5_0007979g0100 Nicotiana tabacum HOM05D000533 ORTHO05D002807 9.4e-14 80.5 50 84.0
Nitab4.5_0000843g0030 Nicotiana tabacum HOM05D000533 ORTHO05D002807 6.1e-13 77.8 64 70.3
ATR0535G001 Amborella trichopoda HOM05D000533 ORTHO05D002807 4.0e-12 75.1 52 73.1
BolC2t10614H Brassica oleracea HOM05D000533 ORTHO05D002807 1.5e-11 73.2 79 59.5
SGA_v2.0_scaffold150G36657 Striga asiatica HOM05D000533 ORTHO05D002807 4.4e-11 71.6 96 49.0
EL10As15g24139 Beta vulgaris HOM05D000533 ORTHO05D002807 5.7e-11 71.2 61 65.6
Nitab4.5_0002752g0100 Nicotiana tabacum HOM05D000533 ORTHO05D002807 2.2e-10 69.3 47 78.7
arahy.Tifrunner.gnm1.ann1.V68ACY Arachis hypogaea HOM05D000533 ORTHO05D001069 1.1e-09 67.0 47 74.5
Sed0007463 Sechium edule HOM05D000533 ORTHO05D002807 1.4e-09 66.6 97 50.5
arahy.Tifrunner.gnm1.ann1.2N2B18 Arachis hypogaea HOM05D008259 ORTHO05D010449 2.4e-09 65.9 50 64.0
Aa31LG5G21730 Aethionema arabicum HOM05D000533 ORTHO05D001069 7.0e-09 64.3 105 44.8
Mapoly0167s0016 Marchantia polymorpha HOM05D000533 ORTHO05D002807 1.6e-08 63.2 53 60.4
Gorai.001G164200 Gossypium raimondii HOM05D000533 ORTHO05D002807 2.7e-08 62.4 102 33.3
SHI52701 Sapria himalayana HOM05D000533 ORTHO05D002807 3.5e-08 62.0 102 33.3
unitig_87.g27987 Utricularia gibba HOM05D000533 ORTHO05D002807 3.5e-08 62.0 102 33.3
Hma1.2p1_1191F.1_g265460 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 5.9e-08 61.2 102 33.3
TPR.G15622 Trifolium pratense HOM05D001366 ORTHO05D005449 5.9e-08 61.2 91 47.3
Psat0s3560g0080 Pisum sativum HOM05D000533 ORTHO05D002807 7.7e-08 60.8 102 33.3
TPR.G74 Trifolium pratense HOM05D000533 ORTHO05D002807 7.7e-08 60.8 102 33.3
ATMG01275 Arabidopsis thaliana HOM05D000533 ORTHO05D002807 1.0e-07 60.5 102 33.3
CAN.G1673.5 Capsicum annuum HOM05D000533 ORTHO05D002807 1.0e-07 60.5 102 33.3
SHI46653 Sapria himalayana HOM05D000533 ORTHO05D002807 1.0e-07 60.5 102 32.4
Solyc00g094530.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 1.0e-07 60.5 102 33.3
HanXRQChr08g0236071 Helianthus annuus HOM05D000533 ORTHO05D002807 2.3e-07 59.3 102 32.4
HanXRQMTg0579311 Helianthus annuus HOM05D000533 ORTHO05D002807 2.3e-07 59.3 102 32.4
SHI50269 Sapria himalayana HOM05D000533 ORTHO05D002807 2.9e-07 58.9 102 32.4
SabraMtG0003500 Salix brachista HOM05D000533 ORTHO05D002807 3.8e-07 58.5 92 33.7
Nitab4.5_0004300g0140 Nicotiana tabacum HOM05D000533 ORTHO05D002807 5.0e-07 58.2 102 33.3
THA.LOC104820711 Tarenaya hassleriana HOM05D000533 ORTHO05D002807 5.0e-07 58.2 84 34.5
TPR.G39966 Trifolium pratense HOM05D000533 ORTHO05D002807 5.0e-07 58.2 39 74.4
SHI35933 Sapria himalayana HOM05D000533 ORTHO05D002807 6.6e-07 57.8 102 32.4
Gorai.013G212700 Gossypium raimondii HOM05D000533 ORTHO05D002807 8.6e-07 57.4 92 33.7
Nitab4.5_0011987g0010 Nicotiana tabacum HOM05D000533 ORTHO05D002807 8.6e-07 57.4 99 31.3
HanXRQChr00c0703g0576921 Helianthus annuus HOM05D000533 ORTHO05D002807 1.9e-06 56.2 55 56.4
Ca_03778_v3 Cicer arietinum L. HOM05D008696 ORTHO05D002807 2.5e-06 55.8 91 33.0
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 2.5e-06 55.8 91 33.0
Ah.10g028480 Amaranthus hybridus HOM05D002965 ORTHO05D010183 3.3e-06 55.5 99 33.3
CAN.G1.14 Capsicum annuum HOM05D000533 ORTHO05D002807 3.3e-06 55.5 102 31.4
Nitab4.5_0000031g0220 Nicotiana tabacum HOM05D000533 ORTHO05D002807 3.3e-06 55.5 102 29.4
TPR.G37210 Trifolium pratense HOM05D000533 ORTHO05D002807 4.2e-06 55.1 46 63.0
CDE02G0273 Ceratophyllum demersum HOM05D000533 ORTHO05D002807 5.5e-06 54.7 93 33.3


User provided reference genes

Program Settings