Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 1.8e-114 416.0 221 100.0
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 1.5e-92 343.2 222 83.8
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 5.7e-92 341.3 222 83.3
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 9.0e-82 307.4 221 78.3
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 8.5e-80 300.8 256 68.8
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 2.2e-64 249.6 203 64.5
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 1.4e-61 240.4 203 63.1
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 4.0e-61 238.8 221 61.5
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 9.7e-60 234.2 219 58.4
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 9.7e-60 234.2 219 58.4
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 9.1e-58 227.6 203 62.1
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 1.9e-55 219.9 201 60.7
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 2.1e-54 216.5 220 55.9
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 1.4e-53 213.8 178 61.8
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 6.3e-51 204.9 235 55.7
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 6.3e-51 204.9 179 62.0
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 7.0e-50 201.4 177 67.8
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 7.0e-50 201.4 183 61.7
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 4.5e-49 198.7 172 61.0
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 7.7e-49 198.0 202 55.4
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 1.5e-47 193.7 170 62.9
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 1.5e-47 193.7 289 41.9
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 5.5e-47 191.8 183 59.6
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 6.1e-46 188.3 179 58.1
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 8.8e-45 184.5 256 46.1
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 1.5e-44 183.7 175 60.6
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 2.6e-44 183.0 183 57.4
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 3.4e-44 182.6 190 54.7
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 4.4e-44 182.2 163 59.5
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 9.8e-44 181.0 193 55.4
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 1.7e-43 180.3 174 56.9
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 4.9e-43 178.7 175 57.7
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 1.8e-42 176.8 193 52.8
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 2.4e-42 176.4 177 56.5
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 5.4e-42 175.3 175 57.1
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 7.0e-42 174.9 185 55.1
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 7.0e-42 174.9 155 61.3
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 1.2e-41 174.1 174 55.7
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 1.6e-41 173.7 170 56.5
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.6e-41 173.7 155 61.3
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.6e-41 173.7 170 56.5
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 2.0e-41 173.3 213 49.3
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 3.5e-41 172.6 193 51.8
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 3.5e-41 172.6 193 51.8
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 4.5e-41 172.2 174 55.2
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 7.7e-41 171.4 159 59.7
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.0e-40 171.0 155 60.6
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 1.3e-40 170.6 172 54.7
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 1.7e-40 170.2 178 53.9
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 2.3e-40 169.9 157 61.8
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 3.8e-40 169.1 193 54.4
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 6.6e-40 168.3 193 52.8
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 1.9e-39 166.8 178 54.5
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 7.3e-39 164.9 161 55.9
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 9.5e-39 164.5 240 43.3
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 2.1e-38 163.3 156 59.0
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 3.0e-37 159.5 186 51.1
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 5.2e-37 158.7 202 49.5
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 8.9e-37 157.9 194 50.0
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 1.2e-36 157.5 191 52.4
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 1.2e-36 157.5 175 56.0
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 2.0e-36 156.8 175 49.1
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 2.0e-36 156.8 177 51.4
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 7.5e-36 154.8 187 49.2
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 7.5e-36 154.8 205 46.8
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 1.3e-35 154.1 195 48.2
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 2.2e-35 153.3 176 51.1
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 8.3e-35 151.4 139 57.6
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 1.1e-34 151.0 248 42.7
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 4.1e-34 149.1 204 46.6
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 7.0e-34 148.3 210 45.7
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 7.0e-34 148.3 264 40.2
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 1.2e-33 147.5 175 48.6
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 2.0e-33 146.7 230 41.7
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 4.6e-33 145.6 181 49.7
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 5.9e-33 145.2 203 45.3
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 3.0e-32 142.9 179 49.2
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 6.6e-32 141.7 208 42.3
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 8.6e-32 141.4 145 53.8
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 8.6e-32 141.4 207 44.9
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 1.9e-31 140.2 165 50.3
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 1.9e-31 140.2 176 50.6
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 3.3e-31 139.4 258 39.9
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 4.3e-31 139.0 165 49.7
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 4.3e-31 139.0 207 48.3
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 7.3e-31 138.3 165 50.9
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 9.5e-31 137.9 187 46.5
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 4.7e-30 135.6 160 51.2
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 1.0e-29 134.4 161 52.8
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 1.4e-29 134.0 165 49.7
PGSC0003DMG400006329 Solanum tuberosum HOM05D004925 ORTHO05D005643 1.8e-29 133.7 185 50.8
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 1.8e-29 133.7 137 51.8
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.8e-29 133.7 229 39.3
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 4.0e-29 132.5 188 46.8
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 8.9e-29 131.3 229 39.3
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 2.6e-28 129.8 164 48.8
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 2.6e-28 129.8 183 47.0
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 3.4e-28 129.4 180 46.1
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 5.8e-28 128.6 169 47.9
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 7.5e-28 128.3 152 50.7
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 2.2e-27 126.7 174 48.3
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 2.9e-27 126.3 183 43.7
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 3.7e-27 125.9 204 43.6
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 4.9e-27 125.6 173 49.7
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 4.9e-27 125.6 168 50.6
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 6.4e-27 125.2 153 51.0
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 1.1e-26 124.4 193 41.5
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 1.1e-26 124.4 206 42.2
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 1.4e-26 124.0 168 50.0
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 1.4e-26 124.0 183 44.8
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 2.4e-26 123.2 156 49.4
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 2.0e-25 120.2 171 44.4
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 5.0e-24 115.5 274 32.8
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 1.5e-23 114.0 176 44.9
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 4.3e-23 112.5 203 43.8
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 2.8e-22 109.8 150 44.7
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 4.7e-22 109.0 154 46.8
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 1.4e-21 107.5 189 40.7
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 3.4e-20 102.8 156 46.2
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 1.3e-19 100.9 103 49.5
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 2.2e-19 100.1 172 43.0
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 6.4e-19 98.6 194 40.7
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 1.1e-18 97.8 145 42.8
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 3.2e-18 96.3 162 41.4
CSS0038538 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 9.2e-18 94.7 64 65.6
Mapoly0040s0118 Marchantia polymorpha HOM05D004925 ORTHO05D005643 1.6e-17 94.0 170 41.8
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 2.1e-17 93.6 209 35.4
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 1.0e-16 91.3 211 33.6
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 1.0e-16 91.3 117 52.1
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 6.6e-16 88.6 209 36.4
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 1.4e-13 80.9 57 63.2
Os03g0234600 Oryza sativa ssp. japonica HOM05D004925 ORTHO05D005643 2.3e-13 80.1 138 36.2
Pp3c22_21740 Physcomitrium patens HOM05D004925 ORTHO05D005643 2.3e-13 80.1 167 37.7
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 4.0e-13 79.3 160 38.8
A09p67630 Brassica napus HOM05D004925 ORTHO05D005643 6.8e-13 78.6 108 45.4
Haze_10406 Corylus avellana HOM05D004925 ORTHO05D005643 9.9e-12 74.7 62 54.8
SMO137G0159 Selaginella moellendorffii HOM05D004925 ORTHO05D005643 9.2e-10 68.2 171 35.1
BraA09t42096Z Brassica rapa HOM05D000053 ORTHO05D000035 2.1e-09 67.0 81 50.6
CSS0015862 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 2.1e-09 67.0 79 46.8
BcaB03g16450 Brassica carinata HOM05D000563 ORTHO05D005643 2.7e-09 66.6 91 46.2
BcaB03g16451 Brassica carinata HOM05D004925 ORTHO05D005643 6.0e-09 65.5 87 46.0
BcaB03g16455 Brassica carinata HOM05D004489 ORTHO05D005643 8.6e-08 61.6 85 44.7
DCAR_024991 Daucus carota HOM05D004925 ORTHO05D005643 8.1e-06 55.1 137 32.8


User provided reference genes

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