Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 2259.2 1149 100.0
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 2085.8 1172 90.3
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 2081.6 1172 90.1
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 2009.2 1190 87.3
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 2004.9 1170 88.4
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1890.5 1205 82.1
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1882.1 1173 82.0
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1860.1 1159 81.5
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1856.3 1203 80.2
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1847.0 1173 80.5
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1842.4 1173 80.3
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1817.4 1174 79.5
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1798.9 1176 77.9
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1794.2 1171 79.2
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1780.8 1175 77.8
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1772.3 1176 78.1
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1771.9 1178 77.2
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1757.7 1178 77.4
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1756.9 1176 76.5
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1756.5 1176 76.6
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1754.2 1176 76.6
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1753.8 1176 76.6
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1753.4 1176 76.6
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1749.6 1176 76.4
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1749.2 1176 76.2
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1746.9 1173 76.6
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1745.3 1177 76.3
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1741.9 1177 76.0
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1736.9 1177 75.8
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1736.5 1176 75.9
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1733.0 1177 77.0
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1732.6 1178 75.9
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1731.5 1177 75.9
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1731.1 1176 75.7
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1728.4 1176 75.3
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1727.6 1177 75.2
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1723.4 1174 75.5
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1723.0 1182 74.8
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1721.8 1187 74.6
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1710.7 1187 74.7
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1710.3 1230 71.9
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1704.9 1178 75.1
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1704.9 1177 74.1
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1703.3 1212 73.5
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1703.3 1178 75.0
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1702.6 1175 74.6
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1702.2 1201 73.9
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1701.8 1177 74.5
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1700.6 1176 75.0
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1699.9 1212 73.3
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1699.5 1174 74.8
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1699.1 1213 73.5
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1696.8 1233 71.4
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1696.0 1178 74.8
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1694.1 1221 72.7
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1692.6 1174 75.6
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1691.8 1217 73.8
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1691.0 1177 73.9
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1690.2 1225 72.3
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1690.2 1200 73.5
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1689.1 1225 72.3
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1689.1 1177 74.0
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1683.7 1175 74.0
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1682.9 1176 74.0
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1681.8 1225 72.2
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1680.2 1214 73.2
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1678.3 1180 73.3
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1673.7 1173 74.2
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1671.0 1176 74.3
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1668.7 1180 73.5
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1658.3 1182 72.9
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1658.3 1177 73.4
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1657.5 1180 73.8
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1655.6 1183 73.3
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1652.1 1176 72.2
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1647.5 1176 72.5
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1645.6 1181 72.1
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1640.6 1212 71.5
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1636.3 1175 72.0
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1630.2 1232 69.4
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1626.7 1177 71.9
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1625.1 1177 71.9
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1621.7 1174 71.5
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1620.9 1239 69.7
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1619.0 1237 69.4
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1617.1 1184 71.3
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1614.4 1183 71.1
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1612.4 1132 74.3
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1610.9 1194 71.5
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1606.3 1177 71.1
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1605.5 1178 71.6
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1602.0 1177 71.0
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1600.9 1180 71.6
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1600.5 1181 70.9
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1600.5 1176 70.6
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1599.7 1173 71.0
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1598.6 1176 70.8
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1597.8 1175 71.1
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1597.4 884 92.1
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1597.0 1177 71.9
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1596.3 1178 71.1
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1596.3 1176 70.7
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1595.9 1176 70.7
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1587.4 1189 70.6
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1578.9 1187 70.6
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1572.8 1175 70.2
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1563.5 1179 70.0
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1563.1 1075 75.3
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1558.5 1179 69.9
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1551.6 1180 69.7
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1548.9 1188 67.7
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1546.9 1177 68.9
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1540.0 1104 72.2
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1537.3 1152 69.4
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1530.0 1177 67.7
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1528.5 1178 67.9
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1502.3 949 81.9
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1491.9 1175 66.9
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1489.6 1175 66.8
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1483.0 1174 67.7
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1462.6 1112 70.1
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1422.1 947 76.8
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1356.3 1161 64.3
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1331.6 1037 68.9
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1311.2 949 72.2
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1277.3 942 70.5
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1262.7 958 69.4
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1219.9 956 70.3
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1216.4 1173 58.1
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1196.0 950 69.2
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1157.1 805 74.2
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1124.8 815 72.9
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1096.3 819 71.2
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 4.3e-308 1061.6 811 70.0
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 3.6e-307 1058.5 1170 54.4
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 1.5e-284 983.4 1180 47.6
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 3.6e-283 978.8 731 71.7
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 7.3e-276 954.5 1207 45.7
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.1e-274 950.7 540 87.6
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 3.6e-238 829.3 721 63.7
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 3.6e-230 802.7 584 73.1
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 5.8e-188 662.5 434 76.3
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 4.0e-165 586.6 360 80.3
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 1.1e-141 508.8 307 81.4
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 3.4e-140 503.8 898 40.2
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 1.5e-132 478.4 308 75.6
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 1.5e-132 478.4 308 75.6
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 4.6e-129 466.8 624 46.3
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 3.9e-112 410.6 809 33.9
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 1.1e-106 392.5 1299 28.3
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 9.7e-103 379.4 285 69.8
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 2.2e-99 368.2 228 78.1
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.2e-87 329.3 516 43.2
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 3.8e-83 314.3 277 62.1
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 8.6e-83 313.2 197 79.2
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 9.5e-82 309.7 205 73.2
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 4.4e-79 300.8 182 80.8
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 7.0e-77 293.5 228 65.4
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 1.9e-69 268.9 255 60.0
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 1.9e-69 268.9 144 91.7
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 1.9e-66 258.8 187 72.7
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 1.3e-59 236.1 187 65.2
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 1.0e-51 209.9 132 82.6
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 1.8e-48 199.1 154 70.1
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 2.9e-46 191.8 118 82.2
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.1e-45 189.9 125 76.0
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 1.8e-35 156.0 92 85.9
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 2.6e-31 142.1 81 82.7
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 1.3e-27 129.8 90 74.4
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 1.8e-27 129.4 95 69.5
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 1.8e-27 129.4 95 69.5
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 1.1e-21 110.2 78 71.8
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 7.9e-20 104.0 83 61.4
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 5.1e-19 101.3 61 77.0
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 4.3e-18 98.2 47 87.2
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 4.8e-17 94.7 59 78.0
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 7.9e-12 77.4 100 46.0


User provided reference genes

Program Settings