Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 3.1e-57 224.9 116 100.0
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 2.0e-40 169.1 99 93.9
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 2.2e-39 165.6 99 90.9
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 3.3e-35 151.8 99 82.8
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 5.7e-35 151.0 99 82.8
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 5.7e-35 151.0 97 82.5
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 1.8e-33 146.0 99 80.8
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 9.1e-33 143.7 97 79.4
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 6.7e-28 127.5 99 70.7
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 8.8e-28 127.1 98 69.4
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 1.3e-26 123.2 93 69.9
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 4.8e-26 121.3 99 66.7
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 4.8e-26 121.3 99 66.7
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 8.2e-26 120.6 108 62.0
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 1.4e-25 119.8 107 61.7
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 2.4e-25 119.0 103 65.0
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 3.1e-25 118.6 106 59.4
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 4.1e-25 118.2 99 62.6
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 4.1e-25 118.2 93 68.8
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 5.3e-25 117.9 93 68.8
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 5.3e-25 117.9 93 68.8
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 5.3e-25 117.9 93 68.8
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 7.0e-25 117.5 98 66.3
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 9.1e-25 117.1 98 64.3
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 9.1e-25 117.1 102 61.8
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 9.1e-25 117.1 98 64.3
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 1.2e-24 116.7 100 65.0
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 1.2e-24 116.7 106 60.4
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 2.0e-24 115.9 99 62.6
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 2.0e-24 115.9 108 58.3
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 2.0e-24 115.9 105 60.0
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 2.6e-24 115.5 99 64.6
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 2.6e-24 115.5 99 62.6
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 3.5e-24 115.2 98 63.3
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 3.5e-24 115.2 101 61.4
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 3.5e-24 115.2 97 61.9
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 4.5e-24 114.8 98 62.2
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 4.5e-24 114.8 99 60.6
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 4.5e-24 114.8 95 65.3
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 4.5e-24 114.8 99 62.6
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 7.7e-24 114.0 106 58.5
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 7.7e-24 114.0 103 59.2
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.3e-23 113.2 99 60.6
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 1.3e-23 113.2 99 59.6
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.3e-23 113.2 90 67.8
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 1.7e-23 112.8 99 60.6
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.7e-23 112.8 107 54.2
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 2.9e-23 112.1 96 63.5
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 2.9e-23 112.1 107 55.1
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 3.8e-23 111.7 95 62.1
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 5.0e-23 111.3 107 57.0
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 5.0e-23 111.3 97 62.9
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.5e-23 110.9 106 58.5
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 8.5e-23 110.5 99 58.6
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 8.5e-23 110.5 88 65.9
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 1.1e-22 110.2 101 59.4
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.5e-22 109.8 96 60.4
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 1.9e-22 109.4 98 62.2
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 2.5e-22 109.0 99 59.6
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 2.5e-22 109.0 98 59.2
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 2.5e-22 109.0 106 57.5
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 3.2e-22 108.6 96 60.4
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 3.2e-22 108.6 98 57.1
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 4.2e-22 108.2 99 58.6
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 4.2e-22 108.2 98 60.2
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 4.2e-22 108.2 99 59.6
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 4.2e-22 108.2 106 57.5
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.2e-22 108.2 106 57.5
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 4.2e-22 108.2 106 56.6
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 5.5e-22 107.8 96 59.4
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 5.5e-22 107.8 96 59.4
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 5.5e-22 107.8 98 59.2
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 9.4e-22 107.1 106 54.7
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 1.2e-21 106.7 97 58.8
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.2e-21 106.7 96 58.3
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.6e-21 106.3 106 57.5
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.6e-21 106.3 91 60.4
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 2.1e-21 105.9 95 61.1
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 2.1e-21 105.9 106 56.6
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.1e-21 105.9 96 58.3
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 2.1e-21 105.9 106 56.6
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 3.6e-21 105.1 107 57.9
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 3.6e-21 105.1 98 57.1
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 3.6e-21 105.1 100 56.0
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 4.7e-21 104.8 99 55.6
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 6.1e-21 104.4 96 57.3
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 6.1e-21 104.4 98 57.1
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 6.1e-21 104.4 96 60.4
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 8.0e-21 104.0 88 64.8
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 8.0e-21 104.0 95 61.1
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 1.0e-20 103.6 100 57.0
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 1.4e-20 103.2 101 59.4
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.8e-20 102.8 96 56.2
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 1.8e-20 102.8 98 56.1
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 1.8e-20 102.8 98 56.1
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 2.3e-20 102.4 99 55.6
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 2.3e-20 102.4 96 54.2
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 3.0e-20 102.1 84 64.3
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 4.0e-20 101.7 99 53.5
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 5.2e-20 101.3 99 55.6
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 5.2e-20 101.3 93 59.1
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 6.8e-20 100.9 96 57.3
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 6.8e-20 100.9 81 65.4
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 6.8e-20 100.9 95 56.8
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 8.8e-20 100.5 84 63.1
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 8.8e-20 100.5 84 63.1
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 8.8e-20 100.5 99 55.6
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 8.8e-20 100.5 96 59.4
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 1.2e-19 100.1 96 57.3
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 1.2e-19 100.1 106 52.8
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 4.4e-19 98.2 100 54.0
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 4.4e-19 98.2 84 61.9
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 4.4e-19 98.2 96 56.2
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 5.7e-19 97.8 96 58.3
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 5.7e-19 97.8 84 61.9
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 2.8e-18 95.5 84 60.7
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 2.8e-18 95.5 103 52.4
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 2.8e-18 95.5 84 60.7
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 3.7e-18 95.1 95 55.8
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 3.7e-18 95.1 99 54.5
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 4.8e-18 94.7 95 55.8
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 6.3e-18 94.4 94 55.3
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 8.3e-18 94.0 97 57.7
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 1.1e-17 93.6 95 55.8
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.4e-17 93.2 96 55.2
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.8e-17 92.8 81 59.3
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 2.4e-17 92.4 81 60.5
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 4.1e-17 91.7 108 48.1
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 5.3e-17 91.3 84 58.3
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 2.0e-16 89.4 108 45.4
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 2.7e-16 89.0 106 48.1
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 2.7e-16 89.0 99 46.5
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.5e-16 88.6 79 60.8
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 1.7e-15 86.3 78 62.8
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 2.9e-15 85.5 85 57.6
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.5e-14 83.2 86 57.0
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 2.5e-14 82.4 75 60.0
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 2.5e-14 82.4 74 59.5
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 3.2e-14 82.0 73 61.6
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 1.2e-13 80.1 59 71.2
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 4.7e-13 78.2 84 57.1
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 6.1e-13 77.8 76 55.3
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 2.3e-12 75.9 79 50.6
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 4.0e-12 75.1 67 56.7
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 1.2e-11 73.6 53 69.8
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 7.5e-11 70.9 96 45.8
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 1.2e-08 63.5 89 41.6
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 3.5e-08 62.0 108 40.7
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 7.7e-08 60.8 60 58.3
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 1.7e-07 59.7 69 52.2
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 1.9e-06 56.2 83 44.6
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 4.2e-06 55.1 77 44.2


User provided reference genes

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