Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 2.6e-98 362.1 184 100.0
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 2.4e-59 232.6 124 99.2
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 1.8e-38 163.3 130 73.8
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 5.1e-38 161.8 130 73.1
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.3e-37 159.1 127 70.9
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 4.3e-37 158.7 127 71.7
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 9.6e-37 157.5 134 67.9
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 5.0e-25 118.6 132 53.8
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 2.5e-24 116.3 136 56.6
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 2.3e-22 109.8 139 51.8
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 6.7e-22 108.2 134 53.0
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 8.8e-22 107.8 127 52.0
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.1e-21 107.5 137 50.4
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.2e-20 103.2 131 55.0
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.2e-20 103.2 131 55.0
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 2.2e-20 103.2 139 50.4
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 2.8e-20 102.8 135 48.9
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 3.7e-20 102.4 144 50.0
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 6.3e-20 101.7 136 50.7
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 6.3e-20 101.7 125 50.4
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 1.1e-19 100.9 137 49.6
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.4e-19 100.5 148 47.3
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.4e-19 100.5 80 67.5
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.4e-19 100.5 80 67.5
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.4e-19 100.5 80 67.5
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.4e-19 100.5 80 67.5
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 1.8e-19 100.1 130 51.5
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 1.8e-19 100.1 136 50.0
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 1.8e-19 100.1 134 49.3
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 2.4e-19 99.8 74 71.6
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 2.4e-19 99.8 136 50.0
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 2.4e-19 99.8 141 48.9
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 3.1e-19 99.4 82 67.1
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 3.1e-19 99.4 135 49.6
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 3.1e-19 99.4 135 49.6
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 3.1e-19 99.4 72 73.6
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 3.1e-19 99.4 83 65.1
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 3.1e-19 99.4 137 48.9
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 3.1e-19 99.4 80 67.5
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 5.3e-19 98.6 139 46.8
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 5.3e-19 98.6 135 47.4
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 5.3e-19 98.6 128 49.2
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 6.9e-19 98.2 132 49.2
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 9.1e-19 97.8 78 67.9
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 9.1e-19 97.8 78 67.9
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.5e-18 97.1 94 59.6
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.5e-18 97.1 135 48.1
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.5e-18 97.1 134 50.0
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 1.5e-18 97.1 133 51.1
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 2.0e-18 96.7 76 65.8
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 2.0e-18 96.7 108 53.7
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 2.6e-18 96.3 132 48.5
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 2.6e-18 96.3 95 57.9
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 2.6e-18 96.3 128 51.6
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 3.4e-18 95.9 133 50.4
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 3.4e-18 95.9 113 54.9
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 3.4e-18 95.9 113 54.9
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 3.4e-18 95.9 139 47.5
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 4.5e-18 95.5 137 47.4
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 4.5e-18 95.5 83 61.4
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.5e-18 95.5 95 57.9
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 5.9e-18 95.1 135 47.4
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 7.7e-18 94.7 147 45.6
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 1.0e-17 94.4 133 44.4
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 1.0e-17 94.4 128 49.2
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 1.0e-17 94.4 133 50.4
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 1.0e-17 94.4 139 48.2
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 1.0e-17 94.4 134 46.3
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.3e-17 94.0 147 46.3
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 1.3e-17 94.0 138 50.7
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 1.7e-17 93.6 74 64.9
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.7e-17 93.6 82 62.2
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 1.7e-17 93.6 90 53.3
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 2.2e-17 93.2 57 80.7
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 2.9e-17 92.8 126 50.8
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 3.8e-17 92.4 138 48.6
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 3.8e-17 92.4 130 46.9
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 6.5e-17 91.7 57 78.9
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 6.5e-17 91.7 66 69.7
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 6.5e-17 91.7 76 65.8
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 8.5e-17 91.3 135 48.1
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 8.5e-17 91.3 135 48.1
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 8.5e-17 91.3 138 47.1
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 8.5e-17 91.3 134 47.0
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 8.5e-17 91.3 76 61.8
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 8.5e-17 91.3 109 51.4
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 8.5e-17 91.3 138 46.4
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 1.1e-16 90.9 56 83.9
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 1.4e-16 90.5 135 47.4
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 1.4e-16 90.5 135 47.4
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 1.4e-16 90.5 75 64.0
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.4e-16 90.5 148 45.3
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 1.4e-16 90.5 135 46.7
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 1.9e-16 90.1 128 46.9
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 1.9e-16 90.1 128 46.9
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 1.9e-16 90.1 137 48.9
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 2.5e-16 89.7 94 54.3
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 2.5e-16 89.7 132 48.5
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 2.5e-16 89.7 134 48.5
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.2e-16 89.4 108 51.9
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 4.2e-16 89.0 102 54.9
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 4.2e-16 89.0 140 44.3
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 5.5e-16 88.6 61 72.1
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 7.2e-16 88.2 61 72.1
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 7.2e-16 88.2 137 43.8
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 9.4e-16 87.8 61 70.5
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.6e-15 87.0 85 61.2
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 2.7e-15 86.3 141 43.3
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 6.1e-15 85.1 73 60.3
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 3.0e-14 82.8 137 41.6
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 3.0e-14 82.8 136 42.6
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 3.0e-14 82.8 88 52.3
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 3.9e-14 82.4 127 44.9
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 3.3e-13 79.3 107 42.1
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 2.2e-12 76.6 77 51.9
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 1.1e-11 74.3 66 56.1
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 1.8e-11 73.6 59 59.3
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 1.8e-11 73.6 57 66.7
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 5.3e-11 72.0 44 79.5
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 9.1e-11 71.2 44 79.5
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 5.9e-10 68.6 44 75.0
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 7.7e-10 68.2 57 57.9
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 3.8e-09 65.9 117 43.6
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 2.1e-07 60.1 37 75.7
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 2.1e-07 60.1 37 75.7
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 2.1e-07 60.1 37 75.7
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 2.7e-07 59.7 44 63.6
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 1.8e-06 57.0 57 47.4


User provided reference genes

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