Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G249.7 Capsicum annuum HOM05D005663 ORTHO05D007258 2.4e-145 518.8 265 100.0
Nitab4.5_0002064g0060 Nicotiana tabacum HOM05D005663 ORTHO05D007258 4.2e-57 225.7 176 73.9
Sopen11g001350 Solanum pennellii HOM05D005663 ORTHO05D007258 1.2e-56 224.2 165 75.8
Solyc11g005340.3 Solanum lycopersicum HOM05D005663 ORTHO05D007258 7.3e-54 214.9 165 73.3
Nitab4.5_0009320g0020 Nicotiana tabacum HOM05D005663 ORTHO05D007258 2.4e-52 209.9 175 69.7
Peaxi162Scf00025g02122 Petunia axillaris HOM05D005663 ORTHO05D007258 9.0e-52 208.0 168 70.2
Hma1.2p1_0006F.1_g004880 Hydrangea macrophylla HOM05D005663 ORTHO05D007258 1.1e-33 147.9 177 50.3
Rhsim08G0003400 Rhododendron simsii HOM05D005663 ORTHO05D007258 3.2e-33 146.4 173 49.1
Cc07_g17370 Coffea canephora HOM05D005663 ORTHO05D007258 7.1e-33 145.2 170 50.0
Manes.13G086600 Manihot esculenta HOM05D005663 ORTHO05D007258 1.6e-32 144.1 154 53.2
Dinv09933 Davidia involucrata HOM05D005663 ORTHO05D007258 3.5e-32 142.9 158 48.7
FvH4_1g23570 Fragaria vesca HOM05D005663 ORTHO05D007258 3.5e-32 142.9 160 53.8
FAN19G1272 Fragaria x ananassa HOM05D005663 ORTHO05D007258 3.5e-32 142.9 160 53.8
vmacro18658 Vaccinium macrocarpon HOM05D005663 ORTHO05D007258 4.6e-32 142.5 168 51.2
CANSAT01G3211 Cannabis sativa HOM05D005663 ORTHO05D007258 6.0e-32 142.1 170 46.5
Lj4g0014342 Lotus japonicus HOM05D005663 ORTHO05D007258 6.0e-32 142.1 156 53.8
BraA03t09772Z Brassica rapa HOM05D005663 ORTHO05D007258 7.9e-32 141.7 105 62.9
PSO541G2505 Papaver somniferum HOM05D005663 ORTHO05D007258 7.9e-32 141.7 100 68.0
Medtr8g092680 Medicago truncatula HOM05D005663 ORTHO05D007258 1.3e-31 141.0 132 56.8
RcHm_v2.0_Chr2g0119121 Rosa chinensis HOM05D005663 ORTHO05D007258 1.3e-31 141.0 168 48.2
PGSC0003DMG400003986 Solanum tuberosum HOM05D005663 ORTHO05D007258 1.3e-31 141.0 81 87.7
Actinidia06667 Actinidia chinensis HOM05D005663 ORTHO05D007258 1.8e-31 140.6 169 51.5
FAN26G2344 Fragaria x ananassa HOM05D005663 ORTHO05D007258 1.8e-31 140.6 160 53.1
Glyma.08G146300 Glycine max HOM05D005663 ORTHO05D007258 1.8e-31 140.6 166 49.4
TPR.G2176 Trifolium pratense HOM05D005663 ORTHO05D007258 3.0e-31 139.8 172 48.8
TWI75G0275 Tripterygium wilfordii HOM05D005663 ORTHO05D007258 3.9e-31 139.4 150 50.0
arahy.Tifrunner.gnm1.ann1.6JE7GZ Arachis hypogaea HOM05D005663 ORTHO05D007258 5.1e-31 139.0 183 43.7
A03p04280 Brassica napus HOM05D005663 ORTHO05D007258 8.7e-31 138.3 92 69.6
PSO675G3544 Papaver somniferum HOM05D005663 ORTHO05D007258 1.5e-30 137.5 100 66.0
Psat7g048760 Pisum sativum HOM05D005663 ORTHO05D007258 1.5e-30 137.5 161 49.7
QL06p051868 Quercus lobata HOM05D005663 ORTHO05D007258 1.5e-30 137.5 168 47.0
Lj4A856T34 Lonicera japonica HOM05D005663 ORTHO05D007258 1.9e-30 137.1 120 60.0
Lalb_Chr12g0203331 Lupinus albus HOM05D005663 ORTHO05D007258 2.5e-30 136.7 168 47.6
AL6G20230 Arabidopsis lyrata HOM05D005663 ORTHO05D007258 3.3e-30 136.3 92 68.5
Migut.H01114 Erythranthe guttata HOM05D005663 ORTHO05D007258 3.3e-30 136.3 108 65.7
COL.COLO4_22418 Corchorus olitorius HOM05D005663 ORTHO05D007258 4.3e-30 136.0 92 70.7
Carub.0006s0824 Capsella rubella HOM05D005663 ORTHO05D007258 5.7e-30 135.6 172 45.9
Thhalv10014407m.g Eutrema salsugineum HOM05D005663 ORTHO05D007258 5.7e-30 135.6 108 60.2
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 5.7e-30 135.6 93 72.0
AT5G09820 Arabidopsis thaliana HOM05D005663 ORTHO05D007258 7.4e-30 135.2 92 68.5
Ca_17664_v3 Cicer arietinum L. HOM05D005663 ORTHO05D007258 7.4e-30 135.2 124 58.1
Haze_25191 Corylus avellana HOM05D005663 ORTHO05D007258 7.4e-30 135.2 117 55.6
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 7.4e-30 135.2 111 57.7
PGR119G0285 Punica granatum HOM05D005663 ORTHO05D007258 7.4e-30 135.2 159 48.4
C03p04720 Brassica napus HOM05D005663 ORTHO05D007258 9.6e-30 134.8 92 68.5
BolC3t13007H Brassica oleracea HOM05D005663 ORTHO05D007258 9.6e-30 134.8 92 68.5
CiPaw.03G123800 Carya illinoinensis HOM05D005663 ORTHO05D007258 9.6e-30 134.8 156 48.7
Sp6g33590 Schrenkiella parvula HOM05D005663 ORTHO05D007258 9.6e-30 134.8 170 48.2
CARHR203580 Cardamine hirsuta HOM05D005663 ORTHO05D007258 1.3e-29 134.4 171 49.1
Ciclev10026263m.g Citrus clementina HOM05D005663 ORTHO05D007258 1.3e-29 134.4 174 47.1
Nn5g28726 Nelumbo nucifera HOM05D005663 ORTHO05D007258 1.3e-29 134.4 105 67.6
Thecc.01G121000 Theobroma cacao HOM05D005663 ORTHO05D007258 1.6e-29 134.0 101 64.4
TAR625G0848 Trochodendron aralioides HOM05D005663 ORTHO05D007258 1.6e-29 134.0 165 49.1
Oeu047646.1 Olea europaea HOM05D005663 ORTHO05D007258 2.1e-29 133.7 125 59.2
Eucgr.I00244 Eucalyptus grandis HOM05D005663 ORTHO05D007258 2.8e-29 133.3 87 75.9
Potri.001G309300 Populus trichocarpa HOM05D005663 ORTHO05D007258 2.8e-29 133.3 91 70.3
arahy.Tifrunner.gnm1.ann1.3896ZX Arachis hypogaea HOM05D005663 ORTHO05D007258 3.7e-29 132.9 171 44.4
CDE04G2754 Ceratophyllum demersum HOM05D005663 ORTHO05D007258 3.7e-29 132.9 108 64.8
arahy.Tifrunner.gnm1.ann1.ILAW0V Arachis hypogaea HOM05D005663 ORTHO05D007258 4.8e-29 132.5 168 44.6
Cpa.g.c33395.2 Carica papaya HOM05D005663 ORTHO05D007258 6.2e-29 132.1 173 44.5
CDE12G0169 Ceratophyllum demersum HOM05D005663 ORTHO05D007258 6.2e-29 132.1 137 56.2
Aqoxy3G02633 Aquilegia oxysepala HOM05D005663 ORTHO05D007258 8.2e-29 131.7 102 64.7
SalBow2G3104 Salvia bowleyana HOM05D005663 ORTHO05D007258 8.2e-29 131.7 92 72.8
arahy.Tifrunner.gnm1.ann1.67XQRG Arachis hypogaea HOM05D005663 ORTHO05D007258 1.1e-28 131.3 183 42.6
Glyma.05G188200 Glycine max HOM05D005663 ORTHO05D007258 1.4e-28 131.0 168 47.0
MD15G1343200 Malus domestica HOM05D005663 ORTHO05D007258 1.8e-28 130.6 90 67.8
Sabra16G0195100 Salix brachista HOM05D005663 ORTHO05D007258 5.3e-28 129.0 91 68.1
TAR381G0497 Trochodendron aralioides HOM05D005663 ORTHO05D007258 5.3e-28 129.0 158 47.5
VMungo0251G2076 Vigna mungo HOM05D005663 ORTHO05D007258 5.3e-28 129.0 161 49.1
Phvul.002G269000 Phaseolus vulgaris HOM05D005663 ORTHO05D007258 6.9e-28 128.6 169 47.3
COL.COLO4_22420 Corchorus olitorius HOM05D005663 ORTHO05D007258 1.2e-27 127.9 104 59.6
Aa31LG3G17290 Aethionema arabicum HOM05D005663 ORTHO05D007258 1.5e-27 127.5 150 47.3
ECA238G2757 Erigeron canadensis HOM05D005663 ORTHO05D007258 2.6e-27 126.7 96 64.6
Gohir.D06G155500 Gossypium hirsutum HOM05D005663 ORTHO05D007258 7.6e-27 125.2 93 64.5
Gorai.010G181700 Gossypium raimondii HOM05D005663 ORTHO05D007258 7.6e-27 125.2 93 64.5
SGA_v2.0_scaffold137G35114 Striga asiatica HOM05D005663 ORTHO05D007258 7.6e-27 125.2 101 65.3
Gorai.002G151300 Gossypium raimondii HOM05D005663 ORTHO05D007258 1.0e-26 124.8 93 64.5
Hund03480 Selenicereus undatus HOM05D005663 ORTHO05D007258 1.0e-26 124.8 164 45.1
Gohir.A06G149400 Gossypium hirsutum HOM05D005663 ORTHO05D007258 1.3e-26 124.4 93 63.4
MBI09_g18623_MAGBIO Magnolia biondii HOM05D005663 ORTHO05D007258 1.3e-26 124.4 132 53.0
unitig_899.g14706 Utricularia gibba HOM05D005663 ORTHO05D007258 1.3e-26 124.4 95 64.2
MBI09_g20114_MAGBIO Magnolia biondii HOM05D005663 ORTHO05D007258 1.7e-26 124.0 156 46.2
Sc03g0004740 Simmondsia chinensis HOM05D005663 ORTHO05D007258 2.2e-26 123.6 174 43.7
Duzib264G0763 Durio zibethinus HOM05D005663 ORTHO05D007258 2.9e-26 123.2 166 45.2
Duzib147G1259 Durio zibethinus HOM05D005663 ORTHO05D007258 3.8e-26 122.9 107 56.1
arahy.Tifrunner.gnm1.ann1.4DFA8P Arachis hypogaea HOM05D005663 ORTHO05D007258 5.0e-26 122.5 88 68.2
HanXRQChr15g0490251 Helianthus annuus HOM05D005663 ORTHO05D007258 5.0e-26 122.5 92 64.1
THA.LOC104818465 Tarenaya hassleriana HOM05D005663 ORTHO05D007258 5.0e-26 122.5 149 47.0
Atru.chr4.540 Acer truncatum HOM05D005663 ORTHO05D007258 6.5e-26 122.1 197 41.1
Os04g0422000 Oryza sativa ssp. japonica HOM05D005663 ORTHO05D007258 6.5e-26 122.1 99 63.6
Zm00001eb083210 Zea mays HOM05D005663 ORTHO05D007258 1.1e-25 121.3 94 67.0
DCAR_027256 Daucus carota HOM05D005663 ORTHO05D007258 2.5e-25 120.2 140 49.3
Lsat_1_v5_gn_4_138241 Lactuca sativa HOM05D005663 ORTHO05D007258 4.2e-25 119.4 171 43.9
Ah.03g146600 Amaranthus hybridus HOM05D005663 ORTHO05D007258 5.5e-25 119.0 86 67.4
Mapoly0058s0022 Marchantia polymorpha HOM05D005663 ORTHO05D007258 1.2e-24 117.9 118 54.2
HPP92_016149 Vanilla planifolia HOM05D005663 ORTHO05D007258 3.5e-24 116.3 110 59.1
Pp3c3_12020 Physcomitrium patens HOM05D005663 ORTHO05D007258 7.9e-24 115.2 106 52.8
arahy.Tifrunner.gnm1.ann1.YJV2YZ Arachis hypogaea HOM05D005663 ORTHO05D007258 1.3e-23 114.4 91 63.7
SEGI_39378 Sequoiadendron giganteum HOM05D005663 ORTHO05D007258 2.3e-23 113.6 134 49.3
arahy.Tifrunner.gnm1.ann1.B1HTRM Arachis hypogaea HOM05D005663 ORTHO05D007258 3.0e-23 113.2 166 44.0
RcHm_v2.0_Chr2g0119061 Rosa chinensis HOM05D005663 ORTHO05D007258 3.7e-21 106.3 67 73.1
SMO358G0575 Selaginella moellendorffii HOM05D005663 ORTHO05D007258 8.2e-21 105.1 80 63.8
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 1.1e-20 104.8 68 72.1
Atru.chr4.1044 Acer truncatum HOM05D005663 ORTHO05D007258 2.4e-20 103.6 166 39.8
Cre03.g188700 Chlamydomonas reinhardtii HOM05D005663 ORTHO05D007258 2.4e-20 103.6 95 51.6
Atru.chr4.1055 Acer truncatum HOM05D005663 ORTHO05D007258 2.6e-19 100.1 166 38.6
BcaNung05557 Brassica carinata HOM05D005663 ORTHO05D007258 5.0e-18 95.9 174 39.1
Mapoly0060s0002 Marchantia polymorpha HOM05D005663 ORTHO05D007258 3.6e-16 89.7 79 57.0
CAN.G783.4 Capsicum annuum HOM05D011894 ORTHO05D013829 6.1e-16 89.0 76 55.3
CAN.G525.66 Capsicum annuum HOM05D000021 ORTHO05D000010 5.7e-14 82.4 105 39.0
FAN23G0034 Fragaria x ananassa HOM05D005663 ORTHO05D007258 9.7e-14 81.6 51 74.5
EL10Ac6g15254 Beta vulgaris HOM05D005663 ORTHO05D007258 2.8e-13 80.1 166 36.1
arahy.Tifrunner.gnm1.ann1.A2IFSH Arachis hypogaea HOM05D005663 ORTHO05D007258 4.8e-13 79.3 65 60.0
arahy.Tifrunner.gnm1.ann1.I27Z20 Arachis hypogaea HOM05D005663 ORTHO05D007258 4.8e-13 79.3 65 60.0
arahy.Tifrunner.gnm1.ann1.UQF3WB Arachis hypogaea HOM05D005663 ORTHO05D007258 4.8e-13 79.3 65 60.0
arahy.Tifrunner.gnm1.ann1.E1FWBU Arachis hypogaea HOM05D005663 ORTHO05D007258 8.2e-13 78.6 63 60.3
Prupe.6G163100 Prunus persica HOM05D005663 ORTHO05D007258 3.1e-12 76.6 124 38.7
Thecc.01G121200 Theobroma cacao HOM05D005663 ORTHO05D007258 4.1e-12 76.3 129 34.9
CAN.G963.9 Capsicum annuum HOM05D000009 ORTHO05D000008 3.4e-11 73.2 53 60.4
CSS0003387 Camellia sinensis var. sinensis HOM05D005663 ORTHO05D007258 7.7e-11 72.0 61 60.7
CSS0035922 Camellia sinensis var. sinensis HOM05D005663 ORTHO05D007258 1.7e-10 70.9 49 73.5
FAN19G2811 Fragaria x ananassa HOM05D005663 ORTHO05D007258 2.2e-10 70.5 72 51.4
FvH4_1g28530 Fragaria vesca HOM05D005663 ORTHO05D007258 5.0e-10 69.3 75 50.7
arahy.Tifrunner.gnm1.ann1.2XR3X5 Arachis hypogaea HOM05D005663 ORTHO05D007258 8.5e-10 68.6 47 72.3
CAN.G80.11 Capsicum annuum HOM05D000022 ORTHO05D000306 1.6e-08 64.3 65 46.2
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 7.9e-08 62.0 81 43.2
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 1.8e-07 60.8 102 37.3
Cpa.g.c30992.3 Carica papaya HOM05D002234 ORTHO05D002254 2.3e-07 60.5 121 34.7
MD01G1001300 Malus domestica HOM05D005663 ORTHO05D007258 2.3e-07 60.5 109 33.9
MSTRG.13126 Avicennia marina HOM05D002234 ORTHO05D002254 3.0e-07 60.1 95 36.8
THA.LOC104812983 Tarenaya hassleriana HOM05D002234 ORTHO05D002254 3.0e-07 60.1 114 36.0
CANSAT56G3737 Cannabis sativa HOM05D002234 ORTHO05D002254 3.9e-07 59.7 130 32.3
CBR_g49209 Chara braunii HOM05D002234 ORTHO05D002254 3.9e-07 59.7 100 39.0
ECA234G4826 Erigeron canadensis HOM05D002234 ORTHO05D002254 5.1e-07 59.3 78 38.5
SEGI_07464 Sequoiadendron giganteum HOM05D002234 ORTHO05D002254 5.1e-07 59.3 99 36.4
unitig_744.g24517 Utricularia gibba HOM05D002234 ORTHO05D002254 5.1e-07 59.3 88 37.5
Lalb_Chr18g0056811 Lupinus albus HOM05D002234 ORTHO05D002254 6.7e-07 58.9 122 35.2
Prupe.4G014000 Prunus persica HOM05D002234 ORTHO05D002254 6.7e-07 58.9 124 32.3
CAN.G1014.51 Capsicum annuum HOM05D002234 ORTHO05D002254 8.8e-07 58.5 150 32.7
Sabra04G0001800 Salix brachista HOM05D002234 ORTHO05D002254 8.8e-07 58.5 124 30.6
CiPaw.09G099600 Carya illinoinensis HOM05D002234 ORTHO05D002254 1.5e-06 57.8 106 34.0
Migut.H01594 Erythranthe guttata HOM05D002234 ORTHO05D002254 1.5e-06 57.8 87 37.9
Migut.M01365 Erythranthe guttata HOM05D002234 ORTHO05D002254 1.5e-06 57.8 92 39.1
AagrBONN_evm.TU.Sc2ySwM_369.590 Anthoceros agrestis HOM05D002234 ORTHO05D002254 2.0e-06 57.4 90 36.7
Lj2A233G30 Lonicera japonica HOM05D002234 ORTHO05D002254 2.6e-06 57.0 92 37.0
Potri.004G003200 Populus trichocarpa HOM05D002234 ORTHO05D002254 2.6e-06 57.0 124 29.8
Carub.0007s1908 Capsella rubella HOM05D002234 ORTHO05D002254 3.3e-06 56.6 91 37.4
FAN13G2743 Fragaria x ananassa HOM05D002234 ORTHO05D002254 3.3e-06 56.6 109 37.6
Zm00001eb081140 Zea mays HOM05D002234 ORTHO05D002254 3.3e-06 56.6 98 33.7
FvH4_5g22910 Fragaria vesca HOM05D002234 ORTHO05D002254 4.4e-06 56.2 107 36.4
FAN04G0881 Fragaria x ananassa HOM05D002234 ORTHO05D002254 4.4e-06 56.2 107 36.4
FAN08G1341 Fragaria x ananassa HOM05D002234 ORTHO05D002254 4.4e-06 56.2 107 36.4
FAN18G2745 Fragaria x ananassa HOM05D002234 ORTHO05D002254 4.4e-06 56.2 107 36.4
FAN18G4293 Fragaria x ananassa HOM05D002234 ORTHO05D002254 4.4e-06 56.2 107 36.4
MD10G1327900 Malus domestica HOM05D002234 ORTHO05D002254 4.4e-06 56.2 173 27.2
Nitab4.5_0004821g0050 Nicotiana tabacum HOM05D002234 ORTHO05D002254 4.4e-06 56.2 181 30.9
Pp3c9_8570 Physcomitrium patens HOM05D002234 ORTHO05D002254 4.4e-06 56.2 67 44.8
SalBow6G4971 Salvia bowleyana HOM05D002234 ORTHO05D002254 4.4e-06 56.2 90 38.9
PGSC0003DMG400016727 Solanum tuberosum HOM05D002234 ORTHO05D002254 4.4e-06 56.2 173 32.4
Atru.chr10.2317 Acer truncatum HOM05D002234 ORTHO05D002254 5.7e-06 55.8 106 33.0
AL7G31390 Arabidopsis lyrata HOM05D002234 ORTHO05D002254 5.7e-06 55.8 104 34.6
CANSAT56G3028 Cannabis sativa HOM05D002234 ORTHO05D002254 5.7e-06 55.8 130 31.5
CAN.G128.75 Capsicum annuum HOM05D000077 ORTHO05D000339 5.7e-06 55.8 52 50.0
Peaxi162Scf00708g00012 Petunia axillaris HOM05D002234 ORTHO05D002254 5.7e-06 55.8 80 40.0
Solyc02g081170.4 Solanum lycopersicum HOM05D002234 ORTHO05D002254 5.7e-06 55.8 82 41.5
Ah.09g234470 Amaranthus hybridus HOM05D002234 ORTHO05D002254 7.4e-06 55.5 107 34.6
Os10g0575700 Oryza sativa ssp. japonica HOM05D002234 ORTHO05D002254 7.4e-06 55.5 90 38.9
QL12p001328 Quercus lobata HOM05D002234 ORTHO05D002254 7.4e-06 55.5 90 37.8
Sed0022749 Sechium edule HOM05D002234 ORTHO05D002254 7.4e-06 55.5 125 33.6
SMO367G0795 Selaginella moellendorffii HOM05D002234 ORTHO05D002254 7.4e-06 55.5 89 36.0
AagrBONN_evm.TU.Sc2ySwM_344.1832 Anthoceros agrestis HOM05D003483 ORTHO05D004101 9.7e-06 55.1 134 35.8
arahy.Tifrunner.gnm1.ann1.4VY1XX Arachis hypogaea HOM05D002234 ORTHO05D002254 9.7e-06 55.1 92 35.9
Ca_00698_v3 Cicer arietinum L. HOM05D002234 ORTHO05D002254 9.7e-06 55.1 112 35.7
Hund21439 Selenicereus undatus HOM05D002234 ORTHO05D002254 9.7e-06 55.1 68 42.6


User provided reference genes

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