Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 3.5e-115 418.3 210 100.0
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 1.8e-108 396.0 210 94.3
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 3.4e-102 375.2 210 89.5
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 3.4e-102 375.2 210 89.5
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 1.8e-100 369.4 210 87.6
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 7.0e-100 367.5 210 87.1
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 1.2e-96 356.7 202 88.6
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 4.9e-93 344.7 210 81.9
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 4.1e-92 341.7 197 85.8
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 5.4e-92 341.3 207 79.2
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.2e-91 340.1 207 79.2
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 1.6e-91 339.7 209 78.9
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.7e-91 339.0 207 78.7
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 5.9e-91 337.8 210 79.0
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 7.8e-91 337.4 210 79.5
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 2.3e-90 335.9 210 77.1
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 2.9e-90 335.5 210 78.6
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 3.9e-90 335.1 210 79.0
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 5.0e-90 334.7 209 78.0
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 8.6e-90 334.0 207 77.3
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 1.5e-89 333.2 210 77.6
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 1.9e-89 332.8 210 77.1
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 2.5e-89 332.4 201 81.6
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 3.3e-89 332.0 208 78.4
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 5.6e-89 331.3 208 76.0
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 5.6e-89 331.3 199 79.9
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 5.6e-89 331.3 210 77.1
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 7.3e-89 330.9 210 76.2
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 9.5e-89 330.5 209 75.1
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 2.1e-88 329.3 208 76.0
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 2.8e-88 328.9 209 76.1
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 3.6e-88 328.6 205 77.6
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 6.1e-88 327.8 210 76.7
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 1.0e-87 327.0 210 77.1
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 3.1e-87 325.5 206 77.2
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 5.2e-87 324.7 209 73.7
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 6.8e-87 324.3 211 75.4
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 8.9e-87 323.9 208 76.4
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.2e-86 323.6 208 73.6
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 1.2e-86 323.6 209 76.1
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 4.4e-86 321.6 210 76.2
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 7.5e-86 320.9 208 72.6
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 1.7e-85 319.7 210 71.4
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.7e-85 319.7 209 74.2
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 1.7e-85 319.7 201 76.1
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 2.9e-85 318.9 210 74.8
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 2.9e-85 318.9 206 76.2
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 3.7e-85 318.5 209 74.2
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 3.7e-85 318.5 206 75.7
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 4.9e-85 318.2 209 74.2
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 6.4e-85 317.8 210 74.3
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 8.3e-85 317.4 203 77.8
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 1.1e-84 317.0 207 75.4
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 1.1e-84 317.0 210 74.3
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 1.9e-84 316.2 213 74.2
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.9e-84 316.2 213 74.2
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.4e-84 315.8 202 77.7
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 3.2e-84 315.5 202 76.7
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 3.2e-84 315.5 209 73.2
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 3.2e-84 315.5 209 74.2
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 3.2e-84 315.5 209 74.2
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 4.1e-84 315.1 213 74.2
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 5.4e-84 314.7 206 75.2
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 5.4e-84 314.7 206 75.2
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 7.0e-84 314.3 208 74.5
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 9.2e-84 313.9 176 91.5
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 9.2e-84 313.9 176 91.5
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 2.7e-83 312.4 209 72.7
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 6.0e-83 311.2 209 73.2
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 7.8e-83 310.8 201 75.6
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 1.3e-82 310.1 208 72.1
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 1.1e-81 307.0 205 72.7
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.5e-81 306.6 234 66.7
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 1.5e-81 306.6 210 73.8
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 1.9e-81 306.2 208 71.2
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 5.6e-81 304.7 201 75.6
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 9.5e-81 303.9 209 70.8
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 1.2e-80 303.5 207 70.0
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 2.1e-80 302.8 200 75.5
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 4.7e-80 301.6 200 74.0
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 8.0e-80 300.8 208 70.2
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 2.3e-79 299.3 201 73.1
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 3.1e-79 298.9 201 72.1
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 4.0e-79 298.5 201 72.6
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 5.2e-79 298.1 208 69.7
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 5.2e-79 298.1 182 79.7
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 8.9e-79 297.4 201 73.1
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 1.2e-78 297.0 200 74.5
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 3.4e-78 295.4 200 74.0
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 5.8e-78 294.7 201 72.1
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 9.8e-78 293.9 195 73.8
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 1.3e-77 293.5 201 71.6
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 1.3e-77 293.5 201 73.1
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 1.3e-77 293.5 201 70.6
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 1.7e-77 293.1 200 73.5
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 1.7e-77 293.1 200 73.5
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.7e-77 293.1 202 70.8
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 3.7e-77 292.0 182 78.6
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 8.3e-77 290.8 200 73.5
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 8.3e-77 290.8 226 65.0
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 1.4e-76 290.0 207 70.0
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 1.9e-76 289.7 186 78.5
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 4.1e-76 288.5 206 69.4
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 5.4e-76 288.1 200 73.0
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 9.2e-76 287.3 210 71.4
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 2.7e-75 285.8 210 71.0
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 4.6e-75 285.0 210 71.0
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 4.6e-75 285.0 193 73.1
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 7.8e-75 284.3 210 65.7
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 3.9e-74 282.0 199 72.4
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 5.1e-74 281.6 198 70.7
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 1.5e-73 280.0 177 75.7
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 1.9e-73 279.6 198 70.7
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 9.5e-73 277.3 198 69.7
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 9.5e-73 277.3 200 68.0
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 1.2e-72 276.9 177 75.7
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 4.7e-72 275.0 198 65.7
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 3.1e-71 272.3 208 64.9
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 6.8e-71 271.2 186 69.9
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 7.5e-70 267.7 201 66.7
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 5.4e-68 261.5 179 70.4
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 1.5e-65 253.4 171 73.1
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.9e-65 253.1 199 63.8
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 7.3e-65 251.1 184 69.6
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 2.2e-61 239.6 215 58.6
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 1.9e-60 236.5 205 62.0
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 2.4e-60 236.1 217 57.6
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 1.2e-59 233.8 171 70.8
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 1.6e-59 233.4 212 59.9
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 4.3e-57 225.3 186 62.4
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 4.8e-56 221.9 209 54.5
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 1.3e-50 203.8 206 52.4
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 1.7e-50 203.4 192 58.9
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 4.3e-49 198.7 217 55.8
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 1.3e-48 197.2 130 71.5
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 2.4e-47 193.0 111 82.0
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 3.0e-42 176.0 113 75.2
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 3.3e-41 172.6 198 45.5
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 7.4e-41 171.4 175 50.9
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 1.5e-38 163.7 94 83.0
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 9.3e-36 154.5 88 84.1
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.2e-30 137.5 195 44.6
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 2.5e-28 129.8 81 82.7
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 7.4e-25 118.2 212 36.8
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 2.8e-24 116.3 75 74.7
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 3.1e-23 112.8 156 37.8
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 2.0e-22 110.2 190 38.4
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 5.9e-22 108.6 206 34.5
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 3.9e-18 95.9 74 55.4
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.1e-17 94.4 198 32.8
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 5.3e-15 85.5 65 61.5
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 1.7e-13 80.5 111 36.9
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 1.4e-12 77.4 66 54.5
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 7.9e-11 71.6 113 41.6
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 1.4e-10 70.9 71 60.6
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 3.9e-10 69.3 38 86.8
CAN.G10322.1 Capsicum annuum HOM05D001108 ORTHO05D115629 2.4e-07 60.1 73 50.7
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 7.0e-07 58.5 147 32.0


User provided reference genes

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