Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G247.6 Capsicum annuum HOM05D000098 ORTHO05D000523 5.7e-30 133.7 70 100.0
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 3.6e-16 87.8 54 79.6
Peaxi162Scf01305g00012 Petunia axillaris HOM05D000098 ORTHO05D000523 2.3e-15 85.1 53 75.5
Nitab4.5_0002153g0070 Nicotiana tabacum HOM05D000098 ORTHO05D000523 1.5e-14 82.4 54 77.8
Nitab4.5_0000914g0120 Nicotiana tabacum HOM05D000098 ORTHO05D000523 3.7e-13 77.8 53 67.9
Nitab4.5_0010706g0020 Nicotiana tabacum HOM05D000098 ORTHO05D000523 1.4e-12 75.9 53 66.0
Potri.001G080700 Populus trichocarpa HOM05D000098 ORTHO05D000523 5.3e-12 73.9 53 64.2
PGSC0003DMG400023505 Solanum tuberosum HOM05D000098 ORTHO05D000523 2.0e-11 72.0 55 61.8
Hma1.2p1_0502F.1_g167800 Hydrangea macrophylla HOM05D000098 ORTHO05D000523 2.6e-11 71.6 53 67.9
CAN.G1602.10 Capsicum annuum HOM05D000098 ORTHO05D000523 3.5e-11 71.2 54 63.0
Solyc05g054900.3 Solanum lycopersicum HOM05D000098 ORTHO05D000523 7.7e-11 70.1 55 63.6
Manes.06G130500 Manihot esculenta HOM05D000098 ORTHO05D000523 1.0e-10 69.7 53 62.3
Dinv34548 Davidia involucrata HOM05D000098 ORTHO05D000523 1.3e-10 69.3 53 66.0
Potri.003G150300 Populus trichocarpa HOM05D000098 ORTHO05D000523 2.2e-10 68.6 53 58.5
TAR636G1501 Trochodendron aralioides HOM05D000098 ORTHO05D000523 2.2e-10 68.6 53 62.3
Actinidia01039 Actinidia chinensis HOM05D000098 ORTHO05D000523 5.0e-10 67.4 53 62.3
CiPaw.07G183900 Carya illinoinensis HOM05D000098 ORTHO05D000523 6.5e-10 67.0 53 58.5
Sabra03G0108800 Salix brachista HOM05D000098 ORTHO05D000523 6.5e-10 67.0 53 56.6
Actinidia31767 Actinidia chinensis HOM05D000098 ORTHO05D000523 1.5e-09 65.9 53 60.4
Haze_22214 Corylus avellana HOM05D000098 ORTHO05D000523 1.9e-09 65.5 49 61.2
ClCG01G004730 Citrullus lanatus HOM05D000098 ORTHO05D000523 2.5e-09 65.1 44 70.5
Sabra01G0057800 Salix brachista HOM05D000098 ORTHO05D000523 3.2e-09 64.7 53 56.6
Cfa013596 Carpinus fangiana HOM05D000098 ORTHO05D000523 9.4e-09 63.2 53 54.7
Glyma.10G193600 Glycine max HOM05D000098 ORTHO05D000523 9.4e-09 63.2 53 56.6
Thecc.03G147200 Theobroma cacao HOM05D000098 ORTHO05D000523 9.4e-09 63.2 53 52.8
DCAR_020168 Daucus carota HOM05D000098 ORTHO05D000523 1.2e-08 62.8 51 58.8
Dinv16879 Davidia involucrata HOM05D000098 ORTHO05D000523 1.6e-08 62.4 53 58.5
QL09p027661 Quercus lobata HOM05D000098 ORTHO05D000523 1.6e-08 62.4 53 58.5
TWI23G0240 Tripterygium wilfordii HOM05D000098 ORTHO05D000523 1.6e-08 62.4 55 61.8
Peaxi162Scf00015g02617 Petunia axillaris HOM05D000098 ORTHO05D000523 2.1e-08 62.0 50 64.0
FAN03G1386 Fragaria x ananassa HOM05D000098 ORTHO05D000523 3.6e-08 61.2 54 59.3
RcHm_v2.0_Chr1g0373501 Rosa chinensis HOM05D000098 ORTHO05D000523 3.6e-08 61.2 54 59.3
CSS0030518 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D000523 4.7e-08 60.8 53 56.6
MELO3C005463.2 Cucumis melo HOM05D000098 ORTHO05D000523 4.7e-08 60.8 34 76.5
CsaV3_5G004920 Cucumis sativus L. HOM05D000098 ORTHO05D000523 4.7e-08 60.8 34 76.5
Duzib068G0773 Durio zibethinus HOM05D000098 ORTHO05D000523 4.7e-08 60.8 54 55.6
FAN06G0197 Fragaria x ananassa HOM05D000098 ORTHO05D000523 4.7e-08 60.8 56 58.9
ATR0665G438 Amborella trichopoda HOM05D000098 ORTHO05D000523 8.0e-08 60.1 41 58.5
Thhalv10014745m.g Eutrema salsugineum HOM05D000098 ORTHO05D000523 8.0e-08 60.1 34 73.5
FAN01G2947 Fragaria x ananassa HOM05D000098 ORTHO05D000523 8.0e-08 60.1 54 59.3
FvH4_7g26810 Fragaria vesca HOM05D000098 ORTHO05D000523 1.0e-07 59.7 54 59.3
FAN10G3570 Fragaria x ananassa HOM05D000098 ORTHO05D000523 1.0e-07 59.7 54 57.4
Gohir.A03G060400 Gossypium hirsutum HOM05D000098 ORTHO05D000523 1.0e-07 59.7 53 50.9
Gohir.D03G105600 Gossypium hirsutum HOM05D000098 ORTHO05D000523 1.0e-07 59.7 53 50.9
Gorai.003G111800 Gossypium raimondii HOM05D000098 ORTHO05D000523 1.0e-07 59.7 53 50.9
Glyma.20G196800 Glycine max HOM05D000098 ORTHO05D000523 1.4e-07 59.3 53 52.8
Duzib205G0259 Durio zibethinus HOM05D000098 ORTHO05D000523 1.8e-07 58.9 73 43.8
Lalb_Chr21g0312711 Lupinus albus HOM05D000098 ORTHO05D000523 1.8e-07 58.9 54 53.7
BcaC06g32431 Brassica carinata HOM05D000098 ORTHO05D000523 2.3e-07 58.5 51 54.9
BcaC06g32480 Brassica carinata HOM05D000098 ORTHO05D000523 2.3e-07 58.5 51 54.9
C09p69610 Brassica napus HOM05D000098 ORTHO05D000523 2.3e-07 58.5 51 54.9
BolC9t59704H Brassica oleracea HOM05D000098 ORTHO05D000523 2.3e-07 58.5 51 54.9
Prupe.2G271300 Prunus persica HOM05D000098 ORTHO05D000523 2.3e-07 58.5 55 52.7
PGR142G1260 Punica granatum HOM05D000098 ORTHO05D000523 2.3e-07 58.5 49 61.2
Rhsim09G0188900 Rhododendron simsii HOM05D000098 ORTHO05D000523 2.3e-07 58.5 44 59.1
Sed0025390 Sechium edule HOM05D000098 ORTHO05D000523 2.3e-07 58.5 54 51.9
Ah.07g208870 Amaranthus hybridus HOM05D000098 ORTHO05D000523 3.0e-07 58.2 51 56.9
A10p29220 Brassica napus HOM05D000098 ORTHO05D000523 3.0e-07 58.2 52 53.8
CARHR205660 Cardamine hirsuta HOM05D000098 ORTHO05D000523 3.0e-07 58.2 34 67.6
Ciclev10005983m.g Citrus clementina HOM05D000098 ORTHO05D000523 3.0e-07 58.2 53 50.9
Duzib205G0063 Durio zibethinus HOM05D000811 ORTHO05D000523 3.0e-07 58.2 45 57.8
Migut.F00535 Erythranthe guttata HOM05D000098 ORTHO05D000523 3.0e-07 58.2 55 52.7
Lj8C48T5 Lonicera japonica HOM05D000098 ORTHO05D000523 3.0e-07 58.2 56 58.9
Nn6g33798 Nelumbo nucifera HOM05D000098 ORTHO05D000523 3.0e-07 58.2 53 52.8
Sp6g35390 Schrenkiella parvula HOM05D000098 ORTHO05D000523 3.0e-07 58.2 53 52.8
SGA_v2.0_scaffold44G16582 Striga asiatica HOM05D000098 ORTHO05D000523 3.0e-07 58.2 70 50.0
BcaC06g32483 Brassica carinata HOM05D000098 ORTHO05D000523 4.0e-07 57.8 52 53.8
A03p03320 Brassica napus HOM05D000098 ORTHO05D000523 4.0e-07 57.8 34 70.6
BraA03t09684Z Brassica rapa HOM05D000098 ORTHO05D000523 4.0e-07 57.8 34 70.6
Cpa.g.sc13.239 Carica papaya HOM05D000098 ORTHO05D000523 5.2e-07 57.4 33 72.7
HanXRQChr09g0252821 Helianthus annuus HOM05D000098 ORTHO05D000523 5.2e-07 57.4 50 50.0
BcaB01g06044 Brassica carinata HOM05D000098 ORTHO05D000523 6.7e-07 57.0 53 52.8
BolC3t12912H Brassica oleracea HOM05D000098 ORTHO05D000523 6.7e-07 57.0 53 52.8
THA.LOC104801643 Tarenaya hassleriana HOM05D000098 ORTHO05D000523 6.7e-07 57.0 43 62.8
Aqoxy3G02701 Aquilegia oxysepala HOM05D000098 ORTHO05D000523 8.8e-07 56.6 54 53.7
BcaB01g05696 Brassica carinata HOM05D000098 ORTHO05D000523 8.8e-07 56.6 55 50.9
BcaB01g05697 Brassica carinata HOM05D000098 ORTHO05D000523 8.8e-07 56.6 55 50.9
Cc11_g06250 Coffea canephora HOM05D000098 ORTHO05D000523 8.8e-07 56.6 53 54.7
Hund11776 Selenicereus undatus HOM05D000001 ORTHO05D000003 8.8e-07 56.6 34 73.5
MD07G1247200 Malus domestica HOM05D000098 ORTHO05D000523 1.2e-06 56.2 55 50.9
EL10Ac3g05724 Beta vulgaris HOM05D000001 ORTHO05D000003 1.5e-06 55.8 37 64.9
Gohir.D09G249750 Gossypium hirsutum HOM05D000098 ORTHO05D000523 1.5e-06 55.8 53 49.1
Phvul.007G135500 Phaseolus vulgaris HOM05D000098 ORTHO05D000523 1.5e-06 55.8 56 51.8
TPR.G13392 Trifolium pratense HOM05D000098 ORTHO05D000523 1.5e-06 55.8 53 54.7
C03p03760 Brassica napus HOM05D000098 ORTHO05D000523 2.0e-06 55.5 53 50.9
ECA238G0195 Erigeron canadensis HOM05D000098 ORTHO05D000523 2.0e-06 55.5 55 54.5
Eucgr.K00120 Eucalyptus grandis HOM05D000098 ORTHO05D000523 2.0e-06 55.5 33 72.7
Lsat_1_v5_gn_2_19020 Lactuca sativa HOM05D000098 ORTHO05D000523 2.0e-06 55.5 50 46.0
MD01G1176400 Malus domestica HOM05D000098 ORTHO05D000523 2.0e-06 55.5 55 52.7
GSVIVG01013874001 Vitis vinifera HOM05D000098 ORTHO05D000523 2.0e-06 55.5 51 52.9
Zm00001eb060320 Zea mays HOM05D000098 ORTHO05D001228 2.0e-06 55.5 56 50.0
arahy.Tifrunner.gnm1.ann1.51A16S Arachis hypogaea HOM05D000098 ORTHO05D000523 2.6e-06 55.1 53 52.8
CANSAT56G1124 Cannabis sativa HOM05D000098 ORTHO05D000523 2.6e-06 55.1 56 51.8
Gohir.A09G248800 Gossypium hirsutum HOM05D000098 ORTHO05D000523 2.6e-06 55.1 53 47.2
Gorai.006G274100 Gossypium raimondii HOM05D000098 ORTHO05D000523 2.6e-06 55.1 53 47.2
vmacro09927 Vaccinium macrocarpon HOM05D000098 ORTHO05D000523 3.3e-06 54.7 53 54.7
COL.COLO4_37326 Corchorus olitorius HOM05D000098 ORTHO05D000523 4.4e-06 54.3 49 46.9
SHI14102 Sapria himalayana HOM05D000098 ORTHO05D000523 4.4e-06 54.3 48 52.1
CANSAT56G2333 Cannabis sativa HOM05D000098 ORTHO05D000523 5.7e-06 53.9 56 50.0
TAR629G1622 Trochodendron aralioides HOM05D000098 ORTHO05D000523 5.7e-06 53.9 49 55.1
AL6G17780 Arabidopsis lyrata HOM05D000098 ORTHO05D000523 7.5e-06 53.5 50 50.0
Sc12g0009550 Simmondsia chinensis HOM05D000098 ORTHO05D000523 7.5e-06 53.5 55 54.5


User provided reference genes

Program Settings