Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G244.7 Capsicum annuum HOM05D005742 ORTHO05D001888 1.0e-124 450.3 259 100.0
PGSC0003DMG400021845 Solanum tuberosum HOM05D005742 ORTHO05D001888 6.2e-74 281.6 234 66.7
Nitab4.5_0000169g0180 Nicotiana tabacum HOM05D005742 ORTHO05D001888 5.3e-73 278.5 271 59.8
Sopen01g026080 Solanum pennellii HOM05D005742 ORTHO05D001888 7.6e-72 274.6 226 63.7
Nitab4.5_0002218g0040 Nicotiana tabacum HOM05D005742 ORTHO05D001888 3.2e-70 269.2 262 59.9
Solyc01g059940.2 Solanum lycopersicum HOM05D005742 ORTHO05D001888 1.1e-67 260.8 233 60.5
Peaxi162Scf00228g00024 Petunia axillaris HOM05D005742 ORTHO05D001888 2.8e-50 203.0 161 61.5
Lj6P690T34 Lonicera japonica HOM05D005742 ORTHO05D001888 5.9e-32 142.1 141 49.6
Migut.G00051 Erythranthe guttata HOM05D005742 ORTHO05D001888 8.0e-29 131.7 146 44.5
DCAR_027000 Daucus carota HOM05D005742 ORTHO05D001888 1.0e-28 131.3 163 42.9
Cc03_g00920 Coffea canephora HOM05D005742 ORTHO05D001888 1.8e-28 130.6 159 42.8
Migut.N00045 Erythranthe guttata HOM05D005742 ORTHO05D001888 1.8e-28 130.6 159 40.9
MSTRG.24819 Avicennia marina HOM05D005742 ORTHO05D001888 3.0e-28 129.8 232 35.8
CSS0018184 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 1.3e-26 124.4 146 41.1
CSS0026509 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 1.3e-26 124.4 146 41.1
Oeu003757.1 Olea europaea HOM05D005742 ORTHO05D001888 3.7e-26 122.9 149 41.6
MSTRG.3861 Avicennia marina HOM05D005742 ORTHO05D001888 2.4e-25 120.2 147 39.5
Oeu032017.1 Olea europaea HOM05D005742 ORTHO05D001888 2.4e-25 120.2 149 40.9
MSTRG.21772 Avicennia marina HOM05D005742 ORTHO05D001888 3.5e-24 116.3 213 36.2
Hma1.2p1_0013F.1_g008650 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 3.5e-24 116.3 146 41.1
unitig_0.g2583 Utricularia gibba HOM05D005742 ORTHO05D001888 4.5e-24 115.9 146 38.4
Dinv44293 Davidia involucrata HOM05D005742 ORTHO05D001888 5.9e-24 115.5 162 41.4
SalBow8G4915 Salvia bowleyana HOM05D005742 ORTHO05D001888 1.1e-22 111.3 144 40.3
Actinidia18454 Actinidia chinensis HOM05D005742 ORTHO05D001888 2.5e-22 110.2 141 41.1
Actinidia40376 Actinidia chinensis HOM05D005742 ORTHO05D001888 2.5e-22 110.2 141 41.1
Actinidia15607 Actinidia chinensis HOM05D005742 ORTHO05D001888 9.4e-22 108.2 146 41.1
SGA_v2.0_scaffold473G52104 Striga asiatica HOM05D005742 ORTHO05D001888 1.6e-21 107.5 177 36.2
DCAR_023352 Daucus carota HOM05D005742 ORTHO05D001888 4.7e-21 105.9 187 32.6
SalBow8G0437 Salvia bowleyana HOM05D005742 ORTHO05D001888 3.0e-20 103.2 222 34.7
Dinv15186 Davidia involucrata HOM05D001340 ORTHO05D002318 4.0e-20 102.8 115 46.1
Rhsim02G0004500 Rhododendron simsii HOM05D005742 ORTHO05D001888 4.0e-20 102.8 143 38.5
unitig_22.g6961 Utricularia gibba HOM05D005742 ORTHO05D001888 4.0e-20 102.8 148 35.1
Rhsim04G0235100 Rhododendron simsii HOM05D005742 ORTHO05D001888 1.5e-19 100.9 149 37.6
vmacro15186 Vaccinium macrocarpon HOM05D005742 ORTHO05D001888 1.5e-19 100.9 148 39.2
CDE02G2547 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 3.4e-19 99.8 145 35.2
Cpa.g.sc9.68 Carica papaya HOM05D005742 ORTHO05D001888 4.4e-19 99.4 142 37.3
TWI09G1381 Tripterygium wilfordii HOM05D005742 ORTHO05D001888 4.4e-19 99.4 144 35.4
CANSAT78G0521 Cannabis sativa HOM05D005742 ORTHO05D001888 7.5e-19 98.6 147 37.4
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 7.5e-19 98.6 144 38.2
vmacro08056 Vaccinium macrocarpon HOM05D001258 ORTHO05D000158 1.3e-18 97.8 141 39.0
MBI19_g03227_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 3.7e-18 96.3 189 32.3
TWI53G1179 Tripterygium wilfordii HOM05D005742 ORTHO05D001888 3.7e-18 96.3 144 36.1
ATR0796G165 Amborella trichopoda HOM05D005742 ORTHO05D001888 8.3e-18 95.1 149 35.6
Gohir.D02G058775 Gossypium hirsutum HOM05D005742 ORTHO05D001888 1.4e-17 94.4 159 36.5
CiPaw.02G075500 Carya illinoinensis HOM05D005742 ORTHO05D001888 1.8e-17 94.0 141 36.9
Cfa015324 Carpinus fangiana HOM05D005742 ORTHO05D001888 2.4e-17 93.6 141 39.7
Gorai.005G066500 Gossypium raimondii HOM05D005742 ORTHO05D001888 2.4e-17 93.6 153 37.3
Haze_01291 Corylus avellana HOM05D005742 ORTHO05D001888 3.1e-17 93.2 141 39.7
Duzib052G0264 Durio zibethinus HOM05D005742 ORTHO05D001888 3.1e-17 93.2 199 31.2
TAR633G1530 Trochodendron aralioides HOM05D005742 ORTHO05D001888 5.4e-17 92.4 145 37.2
HPP92_017245 Vanilla planifolia HOM05D005742 ORTHO05D001888 9.1e-17 91.7 143 37.1
HPP92_027565 Vanilla planifolia HOM05D005742 ORTHO05D001888 9.1e-17 91.7 143 37.1
Manes.01G228700 Manihot esculenta HOM05D008182 ORTHO05D001888 1.2e-16 91.3 204 32.4
RcHm_v2.0_Chr4g0424831 Rosa chinensis HOM05D005742 ORTHO05D001888 1.2e-16 91.3 143 35.0
MBI18_g17308_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 1.6e-16 90.9 141 32.6
SGA_v2.0_scaffold104G30095 Striga asiatica HOM05D005742 ORTHO05D001888 1.6e-16 90.9 125 38.4
Manes.05G004700 Manihot esculenta HOM05D008182 ORTHO05D001888 2.0e-16 90.5 147 34.0
unitig_749.g13364 Utricularia gibba HOM05D005742 ORTHO05D001888 4.5e-16 89.4 161 32.3
Sabra14G0088400 Salix brachista HOM05D008182 ORTHO05D001888 7.7e-16 88.6 146 36.3
Eucgr.H01005 Eucalyptus grandis HOM05D005742 ORTHO05D001888 1.7e-15 87.4 144 31.9
Glyma.15G141100 Glycine max HOM05D005742 ORTHO05D001888 2.3e-15 87.0 233 31.8
MD16G1155100 Malus domestica HOM05D005742 ORTHO05D001888 2.3e-15 87.0 141 33.3
VMungo0540G2083 Vigna mungo HOM05D005742 ORTHO05D001888 2.3e-15 87.0 150 32.0
ClCG10G011490 Citrullus lanatus HOM05D005742 ORTHO05D001888 8.6e-15 85.1 141 31.2
Ciclev10007183m.g Citrus clementina HOM05D005742 ORTHO05D001888 1.9e-14 84.0 149 33.6
Glyma.09G036200 Glycine max HOM05D005742 ORTHO05D001888 1.9e-14 84.0 148 32.4
Psat1g160600 Pisum sativum HOM05D005742 ORTHO05D001888 1.9e-14 84.0 145 35.9
Potri.014G119200 Populus trichocarpa HOM05D008182 ORTHO05D001888 2.5e-14 83.6 146 35.6
Ca_01851_v3 Cicer arietinum L. HOM05D005742 ORTHO05D001888 4.2e-14 82.8 145 35.2
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 5.5e-14 82.4 145 33.1
Duzib138G0624 Durio zibethinus HOM05D008182 ORTHO05D001888 7.2e-14 82.0 142 33.8
Gohir.A02G054001 Gossypium hirsutum HOM05D005742 ORTHO05D001888 9.5e-14 81.6 145 35.2
Phvul.006G117500 Phaseolus vulgaris HOM05D005742 ORTHO05D001888 9.5e-14 81.6 153 34.0
Sabra02G0161800 Salix brachista HOM05D008182 ORTHO05D001888 9.5e-14 81.6 152 32.2
QL06p011856 Quercus lobata HOM05D005742 ORTHO05D001888 1.2e-13 81.3 216 31.9
THA.LOC104818886 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 1.2e-13 81.3 143 32.9
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 1.6e-13 80.9 143 35.0
VMungo0540G0961 Vigna mungo HOM05D005742 ORTHO05D001888 1.6e-13 80.9 151 29.8
CsaV3_4G001290 Cucumis sativus L. HOM05D005742 ORTHO05D001888 2.1e-13 80.5 170 29.4
Prupe.1G118800 Prunus persica HOM05D005742 ORTHO05D001888 2.1e-13 80.5 199 30.7
Carub.0004s3006 Capsella rubella HOM05D026554 ORTHO05D001888 2.8e-13 80.1 152 31.6
Lsat_1_v5_gn_1_41021 Lactuca sativa HOM05D005742 ORTHO05D001888 3.6e-13 79.7 124 35.5
Nn4g25584 Nelumbo nucifera HOM05D005742 ORTHO05D001888 3.6e-13 79.7 146 32.2
Os12g0561500 Oryza sativa ssp. japonica HOM05D005742 ORTHO05D001888 3.6e-13 79.7 148 32.4
Potri.002G194800 Populus trichocarpa HOM05D008182 ORTHO05D001888 3.6e-13 79.7 152 33.6
Duzib211G0330 Durio zibethinus HOM05D008182 ORTHO05D001888 4.7e-13 79.3 143 32.2
Potri.002G194900 Populus trichocarpa HOM05D008182 ORTHO05D001888 6.1e-13 79.0 152 33.6
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 6.1e-13 79.0 143 34.3
MELO3C017910.2 Cucumis melo HOM05D005742 ORTHO05D001888 8.0e-13 78.6 183 28.4
TWI75G0476 Tripterygium wilfordii HOM05D008182 ORTHO05D001888 1.0e-12 78.2 145 30.3
Zm00001eb136950 Zea mays HOM05D005742 ORTHO05D001888 1.0e-12 78.2 151 32.5
arahy.Tifrunner.gnm1.ann1.X5UH65 Arachis hypogaea HOM05D005742 ORTHO05D001888 1.4e-12 77.8 142 31.7
COL.COLO4_23220 Corchorus olitorius HOM05D008182 ORTHO05D001888 1.4e-12 77.8 142 32.4
LjContig00081g0023529 Lotus japonicus HOM05D005742 ORTHO05D001888 1.4e-12 77.8 163 30.1
AT3G36659 Arabidopsis thaliana HOM05D005742 ORTHO05D001888 1.8e-12 77.4 143 34.3
Hma1.2p1_0293F.1_g116340 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 1.8e-12 77.4 80 47.5
Duzib151G0239 Durio zibethinus HOM05D005742 ORTHO05D001888 2.3e-12 77.0 177 31.1
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 3.0e-12 76.6 204 31.9
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 3.0e-12 76.6 143 32.9
Hma1.2p1_0129F.1_g060190 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 3.0e-12 76.6 80 46.2
Medtr2g034220 Medicago truncatula HOM05D005742 ORTHO05D001888 3.0e-12 76.6 146 32.9
PGR083G2154 Punica granatum HOM05D008182 ORTHO05D001888 3.0e-12 76.6 157 32.5
Thecc.04G299300 Theobroma cacao HOM05D005742 ORTHO05D001888 3.0e-12 76.6 140 29.3
Aa31LG5G17240 Aethionema arabicum HOM05D005742 ORTHO05D001888 5.2e-12 75.9 145 33.1
Gohir.A09G224800 Gossypium hirsutum HOM05D008182 ORTHO05D001888 5.2e-12 75.9 143 32.2
Gohir.D08G050500 Gossypium hirsutum HOM05D008182 ORTHO05D001888 6.8e-12 75.5 143 31.5
Zm00001eb028480 Zea mays HOM05D005742 ORTHO05D001888 6.8e-12 75.5 151 33.8
Ah.04g157100 Amaranthus hybridus HOM05D005742 ORTHO05D001888 8.9e-12 75.1 147 27.2
AT2G47340 Arabidopsis thaliana HOM05D026554 ORTHO05D001888 8.9e-12 75.1 155 30.3
Hma1.2p1_0400F.1_g144500 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 1.2e-11 74.7 79 46.8
Gorai.004G050100 Gossypium raimondii HOM05D008182 ORTHO05D001888 2.0e-11 73.9 143 30.8
Gohir.A08G040400 Gossypium hirsutum HOM05D008182 ORTHO05D001888 2.6e-11 73.6 143 32.2
THA.LOC104817455 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 3.4e-11 73.2 164 28.0
AL4G46900 Arabidopsis lyrata HOM05D026554 ORTHO05D001888 4.4e-11 72.8 240 26.2
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 5.7e-11 72.4 184 31.0
CARHR142730 Cardamine hirsuta HOM05D026554 ORTHO05D001888 5.7e-11 72.4 239 28.0
Actinidia06790 Actinidia chinensis HOM05D005742 ORTHO05D001888 7.5e-11 72.0 73 46.6
BcaC05g30549 Brassica carinata HOM05D005742 ORTHO05D001888 7.5e-11 72.0 146 36.3
Cpa.g.sc18.59 Carica papaya HOM05D008182 ORTHO05D001888 9.8e-11 71.6 151 31.8
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 1.3e-10 71.2 144 34.0
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 1.3e-10 71.2 144 34.0
Hma1.2p1_0375F.1_g139000 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 1.3e-10 71.2 80 43.8
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 2.2e-10 70.5 144 33.3
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 2.2e-10 70.5 144 33.3
Atru.chr4.3013 Acer truncatum HOM05D005742 ORTHO05D001888 2.8e-10 70.1 137 30.7
Actinidia13362 Actinidia chinensis HOM05D005742 ORTHO05D001888 3.7e-10 69.7 113 33.6
Gohir.A11G108900 Gossypium hirsutum HOM05D008182 ORTHO05D001888 3.7e-10 69.7 163 28.8
Hma1.2p1_0170F.1_g075030 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 6.3e-10 68.9 154 32.5
Hma1.2p1_0419F.1_g149380 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 6.3e-10 68.9 80 41.2
Sed0009222 Sechium edule HOM05D005742 ORTHO05D001888 6.3e-10 68.9 233 25.3
Aa31LG1G9980 Aethionema arabicum HOM05D008182 ORTHO05D001888 8.3e-10 68.6 145 29.7
Duzib251G0841 Durio zibethinus HOM05D008070 ORTHO05D001888 8.3e-10 68.6 143 30.1
AL1G11880 Arabidopsis lyrata HOM05D008182 ORTHO05D001888 1.4e-09 67.8 142 32.4
QL12p019526 Quercus lobata HOM05D005742 ORTHO05D001888 1.4e-09 67.8 127 28.3
AT1G02550 Arabidopsis thaliana HOM05D008182 ORTHO05D001888 3.2e-09 66.6 145 31.0
Gohir.D11G113500 Gossypium hirsutum HOM05D008182 ORTHO05D001888 3.2e-09 66.6 197 27.4
Gorai.007G122100 Gossypium raimondii HOM05D008182 ORTHO05D001888 5.4e-09 65.9 217 25.8
Actinidia21348 Actinidia chinensis HOM05D008182 ORTHO05D001888 7.0e-09 65.5 115 31.3
TWI36G0098 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 7.0e-09 65.5 143 29.4
Carub.0001s0161 Capsella rubella HOM05D008182 ORTHO05D001888 1.2e-08 64.7 145 31.7
Carub.0003s0619 Capsella rubella HOM05D005742 ORTHO05D001888 1.6e-08 64.3 146 31.5
MD03G1299200 Malus domestica HOM05D005742 ORTHO05D001888 2.7e-08 63.5 155 30.3
CANSAT25G2213 Cannabis sativa HOM05D005742 ORTHO05D001888 3.5e-08 63.2 150 30.0
Dinv25510 Davidia involucrata HOM05D000036 ORTHO05D011952 3.5e-08 63.2 168 31.5
VMungo1383G1128 Vigna mungo HOM05D008489 ORTHO05D010677 4.5e-08 62.8 156 27.6
CDE06G2294 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 5.9e-08 62.4 165 27.3
Lalb_Chr15g0089211 Lupinus albus HOM05D005742 ORTHO05D001888 5.9e-08 62.4 163 28.2
Lalb_Chr15g0089221 Lupinus albus HOM05D005742 ORTHO05D001888 5.9e-08 62.4 163 28.2
Lalb_Chr18g0058721 Lupinus albus HOM05D005742 ORTHO05D001888 5.9e-08 62.4 224 26.8
CARHR001860 Cardamine hirsuta HOM05D008182 ORTHO05D001888 7.8e-08 62.0 146 29.5
CDE07G0112 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 1.0e-07 61.6 143 28.0
QL04p007223 Quercus lobata HOM05D003146 ORTHO05D001819 1.0e-07 61.6 145 25.5
Lalb_Chr15g0089231 Lupinus albus HOM05D005742 ORTHO05D001888 1.3e-07 61.2 163 27.6
ATR0796G103 Amborella trichopoda HOM05D005742 ORTHO05D001888 1.7e-07 60.8 162 25.9
Gorai.006G248300 Gossypium raimondii HOM05D008182 ORTHO05D001888 1.7e-07 60.8 188 27.1
Hma1.2p1_0178F.1_g078280 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 2.9e-07 60.1 57 50.9
Hma1.2p1_0178F.1_g078313 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 2.9e-07 60.1 57 50.9
DCAR_023403 Daucus carota HOM05D009745 ORTHO05D011350 3.9e-07 59.7 150 31.3
CsaV3_2G024840 Cucumis sativus L. HOM05D008070 ORTHO05D001888 5.0e-07 59.3 137 26.3
GSVIVG01015019001 Vitis vinifera HOM05D000036 ORTHO05D011952 5.0e-07 59.3 169 27.8
Phvul.001G213900 Phaseolus vulgaris HOM05D008489 ORTHO05D010677 6.6e-07 58.9 149 26.8
CANSAT01G1404 Cannabis sativa HOM05D008070 ORTHO05D001888 8.6e-07 58.5 141 26.2
Cfa006651 Carpinus fangiana HOM05D003556 ORTHO05D003404 8.6e-07 58.5 156 28.2
CDE07G0552 Ceratophyllum demersum HOM05D001445 ORTHO05D003404 8.6e-07 58.5 151 25.2
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 1.1e-06 58.2 149 28.9
Gohir.D09G226600 Gossypium hirsutum HOM05D008182 ORTHO05D001888 1.1e-06 58.2 188 26.6
FAN22G2095 Fragaria x ananassa HOM05D000281 ORTHO05D000290 2.5e-06 57.0 159 27.0
TAR636G2907 Trochodendron aralioides HOM05D000036 ORTHO05D011952 2.5e-06 57.0 231 28.1
vmacro18768 Vaccinium macrocarpon HOM05D000036 ORTHO05D002265 2.5e-06 57.0 159 28.3
ATR1152G035 Amborella trichopoda HOM05D008070 ORTHO05D001888 3.3e-06 56.6 173 27.2
MBI10_g44381_MAGBIO Magnolia biondii HOM05D008070 ORTHO05D001888 3.3e-06 56.6 141 26.2
Manes.12G025200 Manihot esculenta HOM05D008070 ORTHO05D001888 3.3e-06 56.6 146 24.7
ClCG08G017790 Citrullus lanatus HOM05D008070 ORTHO05D001888 4.3e-06 56.2 141 27.0
MELO3C010682.2 Cucumis melo HOM05D008070 ORTHO05D001888 4.3e-06 56.2 137 25.5
FvH4_4g33950 Fragaria vesca HOM05D000281 ORTHO05D000290 5.6e-06 55.8 157 27.4
FAN12G2605 Fragaria x ananassa HOM05D000036 ORTHO05D000095 5.6e-06 55.8 157 27.4
TAR622G1131 Trochodendron aralioides HOM05D008070 ORTHO05D001888 5.6e-06 55.8 159 28.9
VMungo0720G2810 Vigna mungo HOM05D008489 ORTHO05D010677 5.6e-06 55.8 149 23.5


User provided reference genes

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