Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G2424.1 Capsicum annuum HOM05D006343 ORTHO05D005694 6.6e-161 570.9 334 100.0
CAN.G650.35 Capsicum annuum HOM05D006343 ORTHO05D005694 1.7e-156 556.2 327 92.7
CAN.G650.32 Capsicum annuum HOM05D006343 ORTHO05D005694 3.5e-130 468.8 335 74.3
CAN.G650.25 Capsicum annuum HOM05D006343 ORTHO05D005694 5.3e-110 401.7 334 65.9
CAN.G650.28 Capsicum annuum HOM05D006343 ORTHO05D005694 5.4e-86 322.0 328 62.5
CAN.G526.2 Capsicum annuum HOM05D006343 ORTHO05D005694 5.4e-62 242.3 173 74.0
CAN.G342.1 Capsicum annuum HOM05D006343 ORTHO05D005694 1.1e-57 228.0 173 70.5
Nitab4.5_0001040g0020 Nicotiana tabacum HOM05D006343 ORTHO05D005694 3.8e-55 219.5 343 46.4
Sopen02g019780 Solanum pennellii HOM05D006343 ORTHO05D005694 8.9e-49 198.4 354 45.5
Nitab4.5_0001655g0110 Nicotiana tabacum HOM05D006343 ORTHO05D005694 2.0e-48 197.2 355 43.9
Solyc02g070700.3 Solanum lycopersicum HOM05D006343 ORTHO05D005694 3.5e-45 186.4 352 42.0
PGSC0003DMG400008290 Solanum tuberosum HOM05D006343 ORTHO05D005694 3.1e-33 146.7 209 48.3
Dinv43841 Davidia involucrata HOM05D006343 ORTHO05D005694 2.5e-27 127.1 347 34.0
Nitab4.5_0003369g0030 Nicotiana tabacum HOM05D006343 ORTHO05D005694 2.1e-26 124.0 338 36.1
Ciclev10021525m.g Citrus clementina HOM05D006343 ORTHO05D005694 3.7e-26 123.2 348 31.9
Sabra14G0063500 Salix brachista HOM05D006343 ORTHO05D005694 8.1e-26 122.1 340 32.1
Actinidia20887 Actinidia chinensis HOM05D006343 ORTHO05D005694 1.1e-25 121.7 345 33.9
Potri.014G087500 Populus trichocarpa HOM05D006343 ORTHO05D005694 5.8e-24 115.9 338 30.5
Oeu055797.1 Olea europaea HOM05D006343 ORTHO05D005694 3.8e-23 113.2 346 31.5
MSTRG.18339 Avicennia marina HOM05D006343 ORTHO05D005694 8.4e-23 112.1 340 33.5
CiPaw.02G033200 Carya illinoinensis HOM05D006343 ORTHO05D005694 7.1e-22 109.0 355 30.4
Nitab4.5_0002749g0010 Nicotiana tabacum HOM05D006343 ORTHO05D005694 1.2e-21 108.2 338 33.1
GSVIVG01026998001 Vitis vinifera HOM05D006343 ORTHO05D005694 1.2e-21 108.2 348 31.6
Rhsim01G0164400 Rhododendron simsii HOM05D006343 ORTHO05D005694 2.1e-21 107.5 356 29.5
Manes.01G254700 Manihot esculenta HOM05D006343 ORTHO05D005694 4.6e-21 106.3 357 31.4
Oeu035731.1 Olea europaea HOM05D006343 ORTHO05D005694 6.0e-21 105.9 347 30.5
TAR629G3314 Trochodendron aralioides HOM05D006343 ORTHO05D005694 7.9e-21 105.5 346 31.5
SalBow6G3791 Salvia bowleyana HOM05D006343 ORTHO05D005694 3.0e-20 103.6 359 30.4
Sabra02G0128600 Salix brachista HOM05D006343 ORTHO05D005694 8.7e-20 102.1 339 29.8
Atru.chr5.528 Acer truncatum HOM05D006343 ORTHO05D005694 1.1e-19 101.7 358 29.6
CiPaw.01G064000 Carya illinoinensis HOM05D006343 ORTHO05D005694 1.9e-19 100.9 272 31.2
Potri.002G161700 Populus trichocarpa HOM05D006343 ORTHO05D005694 2.5e-19 100.5 348 31.0
MSTRG.12522 Avicennia marina HOM05D006343 ORTHO05D005694 7.4e-19 99.0 347 31.4
Dinv32502 Davidia involucrata HOM05D006343 ORTHO05D005694 1.6e-18 97.8 200 40.0
Lsat_1_v5_gn_7_4100 Lactuca sativa HOM05D006343 ORTHO05D005694 2.1e-18 97.4 361 28.5
Prupe.2G173800 Prunus persica HOM05D006343 ORTHO05D005694 2.1e-18 97.4 354 29.7
SGA_v2.0_scaffold1G00635 Striga asiatica HOM05D006343 ORTHO05D005694 2.8e-18 97.1 365 30.7
Oeu035722.1 Olea europaea HOM05D006343 ORTHO05D005694 3.7e-18 96.7 333 29.4
Oeu035725.1 Olea europaea HOM05D003054 ORTHO05D003376 3.7e-18 96.7 341 30.5
Manes.05G031900 Manihot esculenta HOM05D006343 ORTHO05D005694 4.8e-18 96.3 350 29.7
CANSAT56G2487 Cannabis sativa HOM05D006343 ORTHO05D005694 1.4e-17 94.7 355 33.8
RcHm_v2.0_Chr1g0357021 Rosa chinensis HOM05D006343 ORTHO05D005694 1.4e-17 94.7 356 28.7
Hma1.2p1_0702F.1_g206150 Hydrangea macrophylla HOM05D006343 ORTHO05D005694 6.9e-17 92.4 343 34.7
Oeu035719.1 Olea europaea HOM05D003054 ORTHO05D003376 3.4e-16 90.1 306 30.4
VMungo0331G0061 Vigna mungo HOM05D006343 ORTHO05D005694 3.4e-16 90.1 352 29.8
FAN01G0301 Fragaria x ananassa HOM05D006343 ORTHO05D005694 4.5e-16 89.7 356 27.0
vmacro20912 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 1.3e-15 88.2 371 26.4
FAN10G0914 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.7e-15 87.8 352 29.8
FAN10G3829 Fragaria x ananassa HOM05D006343 ORTHO05D005694 2.2e-15 87.4 355 28.7
CSS0004449 Camellia sinensis var. sinensis HOM05D006343 ORTHO05D005694 2.9e-15 87.0 353 28.9
Glyma.07G068200 Glycine max HOM05D006343 ORTHO05D005694 3.8e-15 86.7 374 28.3
vmacro20913 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 5.0e-15 86.3 362 27.3
FAN03G1905 Fragaria x ananassa HOM05D006343 ORTHO05D005694 6.5e-15 85.9 354 26.8
FvH4_7g14980 Fragaria vesca HOM05D006343 ORTHO05D005694 1.4e-14 84.7 356 27.2
FAN06G0921 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.9e-14 84.3 356 26.7
QL04p054168 Quercus lobata HOM05D006343 ORTHO05D005694 3.2e-14 83.6 264 27.7
Lsat_1_v5_gn_7_4060 Lactuca sativa HOM05D006343 ORTHO05D005694 4.2e-14 83.2 360 27.5
Phvul.010G101000 Phaseolus vulgaris HOM05D006343 ORTHO05D005694 1.2e-13 81.6 350 29.1
FAN10G3545 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.8e-12 77.8 368 27.7
Eucgr.I00992 Eucalyptus grandis HOM05D006343 ORTHO05D005694 2.3e-12 77.4 347 27.7
FvH4_7g14870 Fragaria vesca HOM05D006343 ORTHO05D005694 2.3e-12 77.4 350 27.7
Cc02_g38320 Coffea canephora HOM05D006343 ORTHO05D005694 3.0e-12 77.0 353 27.2
Rhsim01G0164000 Rhododendron simsii HOM05D006343 ORTHO05D005694 3.0e-12 77.0 363 26.2
FAN10G3557 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.9e-12 76.6 359 27.9
PGR042G0313 Punica granatum HOM05D006343 ORTHO05D005694 5.1e-12 76.3 216 30.6
FAN06G4353 Fragaria x ananassa HOM05D006343 ORTHO05D005694 8.7e-12 75.5 354 27.7
Rhsim06G0236200 Rhododendron simsii HOM05D006343 ORTHO05D005694 8.7e-12 75.5 350 26.6
MD07G1133500 Malus domestica HOM05D006343 ORTHO05D005694 1.5e-11 74.7 355 26.8
Glyma.16G034200 Glycine max HOM05D006343 ORTHO05D005694 3.3e-11 73.6 379 26.9
FAN06G0140 Fragaria x ananassa HOM05D006343 ORTHO05D005694 4.3e-11 73.2 351 27.4
MD01G1067400 Malus domestica HOM05D006343 ORTHO05D005694 5.7e-11 72.8 362 26.0
FAN03G1311 Fragaria x ananassa HOM05D006343 ORTHO05D005694 7.4e-11 72.4 359 26.7
CsaV3_6G000720 Cucumis sativus L. HOM05D006343 ORTHO05D005694 1.3e-10 71.6 356 28.4
PSO782G1271 Papaver somniferum HOM05D020029 ORTHO05D005694 2.2e-10 70.9 193 33.2
ECA233G1044 Erigeron canadensis HOM05D006343 ORTHO05D005694 1.1e-09 68.6 334 25.1
CDE06G1281 Ceratophyllum demersum HOM05D006343 ORTHO05D005694 1.8e-09 67.8 196 30.6
unitig_22.g5289 Utricularia gibba HOM05D006343 ORTHO05D005694 2.4e-09 67.4 340 26.2
CDE02G1832 Ceratophyllum demersum HOM05D006343 ORTHO05D005694 4.1e-09 66.6 256 27.3
Zm00001eb047010 Zea mays HOM05D024295 ORTHO05D020951 4.1e-09 66.6 248 28.6
Actinidia10044 Actinidia chinensis HOM05D006343 ORTHO05D005694 3.4e-08 63.5 126 42.9
Aqoxy7G00256 Aquilegia oxysepala HOM05D006343 ORTHO05D005694 5.9e-08 62.8 363 25.3
Nn1g01591 Nelumbo nucifera HOM05D006343 ORTHO05D005694 1.0e-07 62.0 371 27.2
Oeu035728.1 Olea europaea HOM05D006343 ORTHO05D005694 2.9e-07 60.5 180 35.0
PSO478G4526 Papaver somniferum HOM05D020029 ORTHO05D005694 3.8e-07 60.1 217 32.7
Lalb_Chr17g0339411 Lupinus albus HOM05D006343 ORTHO05D005694 6.5e-07 59.3 363 25.3
TPR.G17916 Trifolium pratense HOM05D006343 ORTHO05D005694 8.5e-07 58.9 49 59.2
Lj3g0021957 Lotus japonicus HOM05D006343 ORTHO05D005694 3.2e-06 57.0 379 24.3
Medtr3g015950 Medicago truncatula HOM05D006343 ORTHO05D005694 5.5e-06 56.2 345 27.2
PSO478G0137 Papaver somniferum HOM05D020029 ORTHO05D005694 5.5e-06 56.2 230 29.6
PSO782G1147 Papaver somniferum HOM05D020029 ORTHO05D005694 5.5e-06 56.2 218 28.4
FAN01G2602 Fragaria x ananassa HOM05D006343 ORTHO05D005694 7.2e-06 55.8 195 30.8
Potri.014G099800 Populus trichocarpa HOM05D006343 ORTHO05D005694 7.2e-06 55.8 283 25.8
Zm00001eb047020 Zea mays HOM05D024295 ORTHO05D020951 7.2e-06 55.8 225 27.6
CARHR248400 Cardamine hirsuta HOM05D012121 ORTHO05D005694 9.4e-06 55.5 364 24.2


User provided reference genes

Program Settings