Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 9.6e-124 446.8 221 100.0
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 1.9e-108 396.0 223 90.1
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 2.5e-95 352.4 225 79.1
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 4.8e-91 338.2 218 78.4
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 5.3e-90 334.7 217 77.9
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 3.1e-82 308.9 225 73.3
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 1.4e-77 293.5 224 71.0
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.4e-73 278.9 194 74.2
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 1.8e-58 229.9 227 56.4
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 4.5e-57 225.3 177 70.6
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.0e-53 212.6 204 54.9
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 1.0e-48 197.6 217 49.8
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 5.0e-48 195.3 239 50.6
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 1.1e-47 194.1 188 56.4
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.6e-46 190.3 227 45.8
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 2.7e-46 189.5 154 64.9
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 1.0e-45 187.6 229 43.7
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 4.0e-45 185.7 240 46.7
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 1.2e-44 184.1 206 46.1
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 2.6e-44 183.0 157 55.4
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 9.8e-44 181.0 210 47.6
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 9.8e-44 181.0 198 52.0
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 2.2e-43 179.9 213 47.4
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 2.4e-42 176.4 190 50.5
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 5.4e-42 175.3 199 45.2
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 1.2e-41 174.1 178 52.2
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 4.5e-41 172.2 173 52.6
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 5.9e-41 171.8 218 44.5
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 7.7e-41 171.4 183 48.6
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 1.3e-40 170.6 153 55.6
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 2.3e-40 169.9 174 51.1
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 2.3e-40 169.9 174 51.1
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 5.0e-40 168.7 206 46.1
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 8.6e-40 167.9 203 45.3
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 8.6e-40 167.9 203 45.3
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 1.9e-39 166.8 180 45.6
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 1.9e-39 166.8 180 45.6
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 2.5e-39 166.4 162 53.7
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 4.3e-39 165.6 178 50.6
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 4.3e-39 165.6 181 45.3
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 4.3e-39 165.6 157 53.5
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 7.3e-39 164.9 162 49.4
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 7.3e-39 164.9 162 49.4
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 7.3e-39 164.9 167 51.5
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 9.5e-39 164.5 233 43.3
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.2e-38 164.1 185 47.0
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.2e-38 164.1 177 48.0
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 1.2e-38 164.1 176 50.0
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 1.2e-38 164.1 164 50.0
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 2.1e-38 163.3 162 49.4
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 2.1e-38 163.3 162 49.4
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 2.8e-38 162.9 232 42.2
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 3.6e-38 162.5 162 49.4
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 3.6e-38 162.5 207 48.3
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 6.1e-38 161.8 166 52.4
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 6.1e-38 161.8 192 49.0
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 8.0e-38 161.4 166 46.4
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 8.0e-38 161.4 166 46.4
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 8.0e-38 161.4 150 53.3
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 1.8e-37 160.2 149 51.7
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 2.3e-37 159.8 158 50.6
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 3.0e-37 159.5 188 47.9
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 4.0e-37 159.1 149 51.0
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 4.0e-37 159.1 173 46.2
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 6.8e-37 158.3 149 51.7
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 8.9e-37 157.9 150 52.7
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 1.2e-36 157.5 178 44.4
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 2.0e-36 156.8 162 49.4
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 3.4e-36 156.0 169 46.2
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 4.4e-36 155.6 166 46.4
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 9.8e-36 154.5 154 53.2
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 1.3e-35 154.1 158 50.0
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.7e-35 153.7 167 46.1
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 1.7e-35 153.7 147 53.7
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.7e-35 153.7 149 50.3
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 1.7e-35 153.7 172 47.1
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 2.2e-35 153.3 156 51.3
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 2.2e-35 153.3 174 47.1
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 2.2e-35 153.3 151 51.0
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.2e-35 153.3 188 46.8
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 3.7e-35 152.5 177 44.6
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.7e-35 152.5 149 49.7
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 3.7e-35 152.5 160 50.0
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 4.9e-35 152.1 149 49.0
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 1.1e-34 151.0 167 46.7
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.4e-34 150.6 152 48.7
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 1.8e-34 150.2 174 43.1
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 3.2e-34 149.4 199 42.7
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 3.2e-34 149.4 149 49.7
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 5.4e-34 148.7 178 44.4
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 7.0e-34 148.3 156 47.4
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 9.2e-34 147.9 169 42.6
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.0e-33 146.7 183 42.6
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 2.7e-33 146.4 182 45.6
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 3.5e-33 146.0 220 37.3
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 3.5e-33 146.0 163 44.8
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 4.6e-33 145.6 169 40.8
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 4.6e-33 145.6 169 40.8
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 7.8e-33 144.8 170 41.8
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 7.8e-33 144.8 170 41.8
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 7.8e-33 144.8 154 47.4
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 1.0e-32 144.4 169 40.2
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 3.9e-32 142.5 165 47.3
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 3.9e-32 142.5 177 41.2
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 5.0e-32 142.1 171 40.9
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 1.5e-31 140.6 187 43.9
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 9.5e-31 137.9 194 39.2
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 9.5e-31 137.9 193 40.4
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 1.6e-30 137.1 155 42.6
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 2.8e-30 136.3 138 48.6
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 6.2e-30 135.2 185 46.5
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.8e-29 133.7 202 38.6
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 3.1e-29 132.9 172 42.4
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 4.0e-29 132.5 186 40.3
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 6.8e-29 131.7 240 35.0
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 6.8e-29 131.7 171 45.6
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 8.9e-29 131.3 160 51.2
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 1.5e-28 130.6 154 40.9
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.0e-28 130.2 185 40.5
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 5.8e-28 128.6 177 45.8
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 5.8e-28 128.6 168 40.5
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 5.8e-28 128.6 166 40.4
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 2.2e-27 126.7 177 42.9
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 3.7e-27 125.9 117 52.1
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 6.4e-27 125.2 179 41.9
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.4e-26 124.0 188 37.8
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.4e-26 124.0 188 37.8
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 1.4e-26 124.0 210 40.0
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 1.4e-26 124.0 188 39.4
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 1.4e-26 124.0 159 39.6
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 2.4e-26 123.2 232 36.2
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.1e-26 122.5 125 45.6
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 4.1e-26 122.5 161 39.8
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 7.0e-26 121.7 154 40.3
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 9.2e-26 121.3 122 45.1
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 1.6e-25 120.6 223 34.5
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 3.5e-25 119.4 122 45.1
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 3.5e-25 119.4 190 38.4
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 6.0e-25 118.6 156 48.1
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 1.0e-24 117.9 231 38.5
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 5.0e-24 115.5 166 36.1
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 1.5e-23 114.0 170 37.6
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 1.9e-23 113.6 120 50.0
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 3.3e-23 112.8 196 39.3
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 5.6e-23 112.1 168 38.7
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 1.6e-22 110.5 170 37.1
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 3.1e-21 106.3 145 41.4
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 6.8e-21 105.1 97 51.5
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 5.8e-20 102.1 162 34.6
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 1.3e-19 100.9 170 33.5
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 1.7e-19 100.5 95 51.6
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 2.4e-18 96.7 155 34.2
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 5.4e-18 95.5 150 37.3
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 6.0e-17 92.0 208 32.7
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 3.6e-14 82.8 164 31.1
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 4.7e-14 82.4 163 35.0
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 8.1e-14 81.6 183 31.1
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 6.8e-13 78.6 182 29.1
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 8.9e-13 78.2 121 38.0
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 2.0e-12 77.0 172 30.2
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 2.6e-12 76.6 75 52.0
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 3.4e-12 76.3 64 57.8
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 4.1e-10 69.3 82 42.7
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 3.9e-08 62.8 77 44.2
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 6.6e-08 62.0 144 28.5


User provided reference genes

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