Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 1.4e-270 935.6 460 100.0
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 9.5e-251 869.8 460 93.5
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 8.9e-249 863.2 460 92.6
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 4.4e-248 860.9 460 92.4
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 1.0e-244 849.7 461 91.3
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 1.7e-239 832.4 470 88.5
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 3.3e-235 818.1 461 88.3
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 1.3e-191 673.3 456 73.9
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 3.2e-190 668.7 462 74.7
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 3.0e-188 662.1 462 74.0
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 1.5e-187 659.8 468 72.4
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 2.4e-185 652.5 467 71.7
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 3.1e-185 652.1 467 71.5
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 3.1e-185 652.1 460 73.0
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 5.3e-185 651.4 461 72.2
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 1.0e-183 647.1 458 72.1
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 1.7e-183 646.4 469 70.4
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 2.2e-183 646.0 462 70.8
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 2.2e-183 646.0 471 70.7
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 1.1e-182 643.7 467 71.1
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 3.2e-182 642.1 468 71.6
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 4.2e-182 641.7 467 70.4
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 5.5e-182 641.3 464 71.3
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 6.7e-180 634.4 469 69.7
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 1.1e-179 633.6 466 70.8
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 9.7e-179 630.6 471 70.5
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 2.2e-178 629.4 467 69.0
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 2.8e-178 629.0 457 70.2
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 6.3e-178 627.9 455 69.0
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 5.3e-177 624.8 429 72.5
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 7.0e-177 624.4 469 67.6
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 1.2e-176 623.6 471 67.9
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 2.0e-176 622.9 450 69.6
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 4.5e-176 621.7 466 67.6
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 4.5e-176 621.7 454 69.2
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 7.7e-176 620.9 454 70.0
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 1.7e-175 619.8 456 70.0
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 2.9e-175 619.0 459 68.4
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 1.6e-173 613.2 455 67.3
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 3.6e-173 612.1 466 67.8
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 4.7e-173 611.7 463 68.7
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 3.3e-171 605.5 449 70.2
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 7.5e-171 604.4 459 65.8
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 7.5e-171 604.4 478 67.6
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 1.7e-170 603.2 455 67.0
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 2.2e-170 602.8 456 68.0
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 1.4e-169 600.1 461 66.6
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 4.1e-169 598.6 470 64.9
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 7.0e-169 597.8 466 65.9
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 2.7e-168 595.9 471 66.7
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 2.7e-168 595.9 455 64.6
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 4.5e-168 595.1 466 65.7
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 4.5e-168 595.1 462 64.7
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 5.9e-168 594.7 432 69.7
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 7.7e-168 594.3 459 66.4
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 1.3e-167 593.6 466 66.5
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 1.7e-167 593.2 469 67.0
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 2.9e-167 592.4 462 64.3
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 3.8e-167 592.0 504 62.3
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 6.5e-167 591.3 468 65.6
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 3.2e-166 589.0 469 66.5
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 3.2e-166 589.0 465 66.2
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 4.2e-166 588.6 451 67.4
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 4.2e-166 588.6 457 67.0
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 5.5e-166 588.2 467 65.5
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 5.5e-166 588.2 465 66.7
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 7.2e-166 587.8 456 66.7
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 1.2e-165 587.0 460 66.7
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.2e-165 587.0 460 66.5
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.2e-165 587.0 460 66.5
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.2e-165 587.0 450 66.7
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.1e-165 586.3 456 66.2
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 2.7e-165 585.9 469 66.5
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.7e-165 585.9 456 66.4
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 4.7e-165 585.1 467 65.3
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 6.1e-165 584.7 474 64.6
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 1.8e-164 583.2 467 65.7
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 1.8e-164 583.2 464 66.2
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 1.5e-163 580.1 462 67.5
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 9.8e-163 577.4 467 65.3
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 1.1e-161 573.9 467 65.1
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 1.1e-161 573.9 467 65.1
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 1.4e-161 573.5 463 65.4
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 7.7e-160 567.8 467 63.6
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 1.7e-159 566.6 440 65.0
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 1.1e-158 563.9 460 64.8
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 4.2e-158 562.0 469 64.4
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 9.5e-158 560.8 472 63.1
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 8.0e-157 557.8 456 62.7
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 6.8e-156 554.7 462 62.6
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 4.4e-155 552.0 477 62.3
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 3.1e-153 545.8 415 67.2
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 7.0e-153 544.7 367 73.8
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 5.0e-151 538.5 421 65.3
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 6.1e-149 531.6 459 61.0
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 3.4e-147 525.8 444 59.9
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 4.9e-146 521.9 463 62.0
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 1.8e-145 520.0 455 57.6
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 1.8e-145 520.0 588 50.5
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 3.5e-144 515.8 449 61.9
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 5.8e-139 498.4 462 55.0
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 4.9e-138 495.4 287 84.3
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 1.6e-136 490.3 311 78.5
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 3.5e-136 489.2 411 62.8
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 3.9e-135 485.7 443 57.1
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 1.9e-134 483.4 465 57.0
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 4.3e-134 482.3 294 80.6
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 1.7e-111 407.1 430 54.7
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 1.2e-107 394.4 221 86.0
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 1.8e-103 380.6 361 55.1
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 2.6e-99 366.7 468 50.0
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 1.9e-97 360.5 473 47.4
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 6.2e-93 345.5 259 68.7
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 1.5e-91 340.9 273 59.7
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 4.6e-72 276.2 491 35.8
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 6.7e-71 272.3 171 78.4
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 9.7e-70 268.5 456 38.2
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 2.6e-67 260.4 286 50.0
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 2.3e-55 220.7 286 39.2
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 1.7e-45 188.0 243 45.3
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 2.7e-35 154.1 120 58.3
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 4.3e-33 146.7 237 42.2
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 7.3e-33 146.0 202 35.6
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.2e-32 145.2 95 75.8
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 1.2e-27 128.6 170 42.9
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 3.0e-26 124.0 80 72.5
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 1.1e-23 115.5 62 83.9
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 1.7e-18 98.2 82 57.3
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 3.1e-15 87.4 61 72.1
Aqoxy1G04253 Aquilegia oxysepala HOM05D006127 ORTHO05D078839 8.9e-07 59.3 49 65.3


User provided reference genes

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