Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 7.5e-184 647.1 342 100.0
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 6.8e-137 491.1 344 81.4
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 1.3e-124 450.3 344 73.8
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 1.8e-121 439.9 345 72.8
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.3e-111 407.1 344 68.9
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 3.7e-98 362.5 349 63.0
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.0e-95 354.4 358 61.5
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 7.9e-85 318.2 351 57.0
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.7e-82 310.5 256 69.1
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 4.8e-82 308.9 345 59.4
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 8.2e-82 308.1 351 56.1
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 1.0e-76 291.2 336 53.6
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 2.3e-76 290.0 240 66.7
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 1.5e-75 287.3 341 52.5
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 1.5e-75 287.3 338 54.1
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 1.8e-73 280.4 338 51.2
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 2.4e-73 280.0 338 51.5
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 3.1e-73 279.6 342 52.9
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 4.1e-73 279.3 346 52.9
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 2.0e-72 276.9 353 51.8
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 2.9e-71 273.1 338 51.2
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 2.9e-71 273.1 338 51.2
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 5.0e-71 272.3 225 65.3
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 1.9e-70 270.4 340 50.6
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 1.6e-69 267.3 340 52.1
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 2.7e-69 266.5 320 52.2
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 3.6e-69 266.2 218 64.7
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 6.1e-69 265.4 337 50.7
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 3.0e-68 263.1 341 50.4
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 6.7e-68 261.9 319 51.1
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 2.8e-66 256.5 337 49.0
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 6.3e-66 255.4 342 48.8
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 1.4e-65 254.2 244 60.2
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 3.1e-65 253.1 338 46.7
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 7.0e-65 251.9 343 47.2
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 9.1e-65 251.5 342 46.8
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 1.2e-64 251.1 340 50.0
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 2.7e-64 250.0 344 45.6
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 7.7e-64 248.4 299 52.8
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.7e-63 247.3 330 47.9
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 1.7e-63 247.3 329 48.9
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 2.2e-63 246.9 227 59.0
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 2.2e-63 246.9 334 49.1
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 3.8e-63 246.1 249 61.0
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 3.8e-63 246.1 327 50.2
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 6.5e-63 245.4 237 60.3
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 6.5e-63 245.4 343 46.6
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 3.2e-62 243.0 338 47.3
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 5.5e-62 242.3 339 48.1
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 9.4e-62 241.5 231 58.9
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 9.4e-62 241.5 325 48.0
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 1.2e-61 241.1 339 47.5
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 1.6e-61 240.7 323 49.8
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 1.6e-61 240.7 338 47.3
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.1e-61 240.4 345 49.9
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 2.7e-61 240.0 342 48.8
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 2.7e-61 240.0 340 47.9
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 6.1e-61 238.8 323 50.5
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.0e-60 238.0 330 47.9
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 1.0e-60 238.0 337 50.1
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 1.0e-60 238.0 344 47.7
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 1.8e-60 237.3 259 55.6
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.3e-60 236.9 370 46.5
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 3.0e-60 236.5 350 47.7
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 4.0e-60 236.1 226 58.0
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 4.0e-60 236.1 330 47.6
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 5.2e-60 235.7 337 47.5
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 2.0e-59 233.8 338 46.4
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 2.0e-59 233.8 338 45.6
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 2.6e-59 233.4 338 47.6
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 2.6e-59 233.4 340 47.9
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 3.4e-59 233.0 338 45.6
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 4.4e-59 232.6 356 45.5
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 7.5e-59 231.9 338 46.2
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 2.8e-58 229.9 334 47.0
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 4.8e-58 229.2 341 47.2
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.1e-57 228.0 334 45.5
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.4e-57 227.6 332 45.8
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 1.4e-57 227.6 246 55.7
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 1.8e-57 227.3 302 51.7
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 2.4e-57 226.9 341 46.3
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 3.1e-57 226.5 341 46.0
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 9.1e-57 224.9 341 44.9
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 9.1e-57 224.9 342 45.9
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.2e-56 224.6 341 44.9
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.6e-56 224.2 334 45.2
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 5.9e-56 222.2 343 44.9
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 7.7e-56 221.9 334 44.9
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 7.7e-56 221.9 253 54.2
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 1.3e-55 221.1 334 48.8
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 6.6e-55 218.8 329 45.0
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 2.5e-54 216.9 343 46.4
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 3.3e-54 216.5 364 44.0
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 2.8e-53 213.4 332 47.3
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 3.6e-53 213.0 351 43.3
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 2.3e-52 210.3 334 43.7
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 2.3e-52 210.3 324 44.4
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 8.9e-52 208.4 338 44.1
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 3.4e-51 206.5 249 53.4
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 4.9e-50 202.6 332 43.7
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 6.3e-50 202.2 159 66.0
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 6.3e-50 202.2 328 43.6
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 2.4e-49 200.3 327 42.2
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 7.0e-49 198.7 150 66.0
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 7.8e-48 195.3 216 57.4
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 2.3e-47 193.7 229 53.7
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.9e-46 190.7 374 41.2
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 2.5e-46 190.3 226 50.0
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 9.5e-46 188.3 328 41.5
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 2.8e-45 186.8 233 51.1
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 4.7e-45 186.0 233 51.1
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 4.7e-45 186.0 234 50.9
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 4.7e-45 186.0 316 43.0
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 6.1e-45 185.7 131 70.2
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 6.1e-45 185.7 240 50.0
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 8.0e-45 185.3 322 41.9
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 3.0e-44 183.3 241 49.4
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 3.0e-44 183.3 320 40.0
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 6.8e-44 182.2 236 53.0
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 2.0e-43 180.6 224 54.0
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 7.5e-43 178.7 332 42.8
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 1.7e-42 177.6 233 49.8
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 1.7e-42 177.6 233 49.8
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.7e-42 177.6 231 49.8
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 3.7e-42 176.4 236 50.4
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 4.9e-42 176.0 236 51.3
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 6.4e-42 175.6 227 50.2
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 1.1e-41 174.9 233 50.6
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.9e-41 174.1 333 43.5
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 5.4e-41 172.6 337 39.8
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 2.7e-40 170.2 342 41.8
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 2.7e-40 170.2 338 40.8
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 6.0e-40 169.1 233 48.5
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 6.0e-40 169.1 233 48.5
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 6.0e-40 169.1 238 47.5
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 1.3e-39 167.9 338 40.5
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 5.0e-39 166.0 234 48.7
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.1e-38 164.9 220 50.5
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 7.3e-38 162.2 353 38.0
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 9.5e-38 161.8 199 50.8
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 1.2e-37 161.4 235 48.5
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 2.1e-37 160.6 249 46.2
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 3.6e-37 159.8 285 43.9
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 9.8e-35 151.8 102 71.6
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 9.8e-35 151.8 338 39.1
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 1.1e-33 148.3 327 38.5
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 1.2e-32 144.8 263 37.6
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 3.5e-32 143.3 225 43.6
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 3.5e-32 143.3 225 43.6
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 7.8e-32 142.1 228 44.3
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 1.0e-31 141.7 228 44.3
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 1.3e-31 141.4 199 45.7
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 6.6e-31 139.0 178 46.6
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 4.3e-30 136.3 102 70.6
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 4.3e-30 136.3 329 37.1
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.5e-27 127.9 317 37.2
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 2.2e-26 124.0 195 42.6
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 9.2e-25 118.6 273 35.5
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 2.3e-23 114.0 150 48.7
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 1.6e-21 107.8 163 44.2
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 4.2e-17 93.2 63 79.4
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 3.5e-16 90.1 66 63.6


User provided reference genes

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