Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G228.4 Capsicum annuum HOM05D001035 ORTHO05D001045 3.8e-51 204.5 103 100.0
Solyc07g017430.3 Solanum lycopersicum HOM05D001035 ORTHO05D001045 1.6e-36 156.0 84 91.7
Sopen07g006130 Solanum pennellii HOM05D001035 ORTHO05D001045 3.5e-36 154.8 84 91.7
Nitab4.5_0001147g0080 Nicotiana tabacum HOM05D001035 ORTHO05D001045 1.6e-33 146.0 85 88.2
Nitab4.5_0005903g0010 Nicotiana tabacum HOM05D001035 ORTHO05D001045 2.1e-33 145.6 86 87.2
Peaxi162Scf00320g00124 Petunia axillaris HOM05D001035 ORTHO05D001045 6.2e-33 144.1 83 85.5
Cc06_g12710 Coffea canephora HOM05D001035 ORTHO05D001045 4.6e-20 101.3 75 68.0
GSVIVG01015013001 Vitis vinifera HOM05D001035 ORTHO05D001045 7.8e-20 100.5 80 63.8
Dinv25505 Davidia involucrata HOM05D001035 ORTHO05D001045 1.3e-19 99.8 75 65.3
Dinv42433 Davidia involucrata HOM05D001035 ORTHO05D001045 6.6e-19 97.4 74 64.9
SalBow6G2123 Salvia bowleyana HOM05D001035 ORTHO05D001045 1.3e-17 93.2 77 61.0
Rhsim05G0002000 Rhododendron simsii HOM05D001035 ORTHO05D001045 1.4e-16 89.7 75 61.3
TAR383G0664 Trochodendron aralioides HOM05D001035 ORTHO05D001045 1.4e-16 89.7 75 60.0
Sc18g0002850 Simmondsia chinensis HOM05D001035 ORTHO05D001045 1.8e-16 89.4 81 58.0
TAR624G0625 Trochodendron aralioides HOM05D001035 ORTHO05D001045 1.8e-16 89.4 77 57.1
Thecc.09G070200 Theobroma cacao HOM05D001035 ORTHO05D001045 5.3e-16 87.8 82 58.5
Nn8g38532 Nelumbo nucifera HOM05D001035 ORTHO05D001045 3.4e-15 85.1 80 57.5
Glyma.13G114600 Glycine max HOM05D001035 ORTHO05D001045 5.8e-15 84.3 81 58.0
Lj4g0012203 Lotus japonicus HOM05D001035 ORTHO05D001045 5.8e-15 84.3 83 56.6
Ah.09g228910 Amaranthus hybridus HOM05D001035 ORTHO05D001045 1.3e-14 83.2 75 53.3
CiPaw.04G140300 Carya illinoinensis HOM05D001035 ORTHO05D001045 1.7e-14 82.8 82 54.9
Glyma.17G045400 Glycine max HOM05D001035 ORTHO05D001045 1.7e-14 82.8 81 55.6
CiPaw.03G200300 Carya illinoinensis HOM05D001035 ORTHO05D001045 2.2e-14 82.4 82 56.1
Duzib150G1380 Durio zibethinus HOM05D001035 ORTHO05D001045 2.2e-14 82.4 82 54.9
Lj7C693G5 Lonicera japonica HOM05D001035 ORTHO05D001045 2.2e-14 82.4 72 59.7
Potri.018G063700 Populus trichocarpa HOM05D001035 ORTHO05D001045 2.2e-14 82.4 89 53.9
FAN23G2583 Fragaria x ananassa HOM05D001035 ORTHO05D001045 2.9e-14 82.0 73 58.9
MD02G1102300 Malus domestica HOM05D001035 ORTHO05D001045 2.9e-14 82.0 66 62.1
FvH4_1g09400 Fragaria vesca HOM05D001035 ORTHO05D001045 3.8e-14 81.6 73 58.9
FAN19G0042 Fragaria x ananassa HOM05D001035 ORTHO05D001045 3.8e-14 81.6 73 58.9
FAN26G1728 Fragaria x ananassa HOM05D001035 ORTHO05D001045 3.8e-14 81.6 73 58.9
FAN26G1913 Fragaria x ananassa HOM05D001035 ORTHO05D001045 3.8e-14 81.6 73 58.9
Hund08901 Selenicereus undatus HOM05D001035 ORTHO05D001045 4.9e-14 81.3 66 62.1
MBI13_g01671_MAGBIO Magnolia biondii HOM05D001035 ORTHO05D001045 6.4e-14 80.9 81 59.3
Atru.chr7.1768 Acer truncatum HOM05D001035 ORTHO05D001045 8.4e-14 80.5 76 53.9
Prupe.7G192000 Prunus persica HOM05D001035 ORTHO05D001045 8.4e-14 80.5 76 55.3
Sabra06G0106600 Salix brachista HOM05D001035 ORTHO05D001045 8.4e-14 80.5 80 57.5
Haze_26070 Corylus avellana HOM05D001035 ORTHO05D001045 1.1e-13 80.1 117 41.0
Oeu030624.1 Olea europaea HOM05D001035 ORTHO05D001045 1.1e-13 80.1 72 55.6
VMungo1215G1452 Vigna mungo HOM05D001035 ORTHO05D001045 1.1e-13 80.1 81 55.6
ClCG11G000140 Citrullus lanatus HOM05D001035 ORTHO05D001045 1.4e-13 79.7 80 58.8
Aqoxy7G00976 Aquilegia oxysepala HOM05D001035 ORTHO05D001045 1.9e-13 79.3 63 58.7
Migut.J00880 Erythranthe guttata HOM05D001035 ORTHO05D001045 1.9e-13 79.3 80 53.8
FAN28G1935 Fragaria x ananassa HOM05D001035 ORTHO05D001045 2.4e-13 79.0 73 57.5
Gohir.A06G079700 Gossypium hirsutum HOM05D001035 ORTHO05D001045 2.4e-13 79.0 82 57.3
Lalb_Chr07g0181421 Lupinus albus HOM05D001035 ORTHO05D001045 2.4e-13 79.0 79 54.4
Manes.03G044800 Manihot esculenta HOM05D001035 ORTHO05D001045 2.4e-13 79.0 64 62.5
Nn6g35629 Nelumbo nucifera HOM05D001035 ORTHO05D001045 2.4e-13 79.0 81 55.6
Sabra18G0056900 Salix brachista HOM05D001035 ORTHO05D001045 2.4e-13 79.0 81 58.0
Manes.16G090400 Manihot esculenta HOM05D001035 ORTHO05D001045 3.2e-13 78.6 66 62.1
Medtr4g124630 Medicago truncatula HOM05D001035 ORTHO05D001045 3.2e-13 78.6 79 53.2
MSTRG.10487 Avicennia marina HOM05D001035 ORTHO05D001045 4.2e-13 78.2 74 55.4
Hund26111 Selenicereus undatus HOM05D001035 ORTHO05D001045 4.2e-13 78.2 81 50.6
MD15G1223800 Malus domestica HOM05D001035 ORTHO05D001045 5.4e-13 77.8 75 54.7
Phvul.003G127200 Phaseolus vulgaris HOM05D001035 ORTHO05D001045 5.4e-13 77.8 81 54.3
RcHm_v2.0_Chr2g0095951 Rosa chinensis HOM05D001035 ORTHO05D001045 5.4e-13 77.8 73 54.8
EL10Ac8g18964 Beta vulgaris HOM05D001035 ORTHO05D001045 7.1e-13 77.4 77 49.4
Gohir.A13G189000 Gossypium hirsutum HOM05D001035 ORTHO05D001045 7.1e-13 77.4 81 53.1
Gohir.D13G196000 Gossypium hirsutum HOM05D001035 ORTHO05D001045 7.1e-13 77.4 81 53.1
Ca_21340_v3 Cicer arietinum L. HOM05D001035 ORTHO05D001045 9.3e-13 77.0 81 53.1
MSTRG.19427 Avicennia marina HOM05D001035 ORTHO05D001045 1.2e-12 76.6 74 55.4
Gorai.001G017800 Gossypium raimondii HOM05D001035 ORTHO05D001045 1.2e-12 76.6 82 54.9
QL11p002968 Quercus lobata HOM05D001035 ORTHO05D001045 1.6e-12 76.3 75 54.7
Actinidia39616 Actinidia chinensis HOM05D001035 ORTHO05D001045 2.1e-12 75.9 75 53.3
Gorai.010G092400 Gossypium raimondii HOM05D001035 ORTHO05D001045 2.1e-12 75.9 82 54.9
Gohir.A07G017200 Gossypium hirsutum HOM05D001035 ORTHO05D001045 2.7e-12 75.5 82 54.9
TPR.G12668 Trifolium pratense HOM05D001035 ORTHO05D001045 2.7e-12 75.5 77 55.8
SGA_v2.0_scaffold21G09560 Striga asiatica HOM05D001035 ORTHO05D001045 3.5e-12 75.1 70 58.6
TWI34G0853 Tripterygium wilfordii HOM05D001035 ORTHO05D001045 3.5e-12 75.1 76 53.9
AUR62025337 Chenopodium quinoa HOM05D001035 ORTHO05D001045 4.6e-12 74.7 74 51.4
arahy.Tifrunner.gnm1.ann1.0L0BEE Arachis hypogaea HOM05D001035 ORTHO05D001045 7.8e-12 73.9 69 52.2
DCAR_010489 Daucus carota HOM05D001035 ORTHO05D001045 7.8e-12 73.9 76 55.3
GSVIVG01016693001 Vitis vinifera HOM05D001035 ORTHO05D001045 7.8e-12 73.9 102 38.2
arahy.Tifrunner.gnm1.ann1.FZUB0X Arachis hypogaea HOM05D001035 ORTHO05D001045 1.0e-11 73.6 67 53.7
Ciclev10007455m.g Citrus clementina HOM05D001035 ORTHO05D001045 1.0e-11 73.6 82 56.1
ATR0317G054 Amborella trichopoda HOM05D001035 ORTHO05D001045 1.3e-11 73.2 54 63.0
ECA234G2757 Erigeron canadensis HOM05D001035 ORTHO05D001045 1.3e-11 73.2 50 62.0
Gorai.013G222100 Gossypium raimondii HOM05D001035 ORTHO05D001045 1.3e-11 73.2 81 51.9
Lalb_Chr12g0200351 Lupinus albus HOM05D001035 ORTHO05D001045 1.3e-11 73.2 83 50.6
vmacro22016 Vaccinium macrocarpon HOM05D001035 ORTHO05D001045 1.3e-11 73.2 108 39.8
Lsat_1_v5_gn_5_136700 Lactuca sativa HOM05D001035 ORTHO05D001045 1.7e-11 72.8 50 62.0
MELO3C022895.2 Cucumis melo HOM05D001035 ORTHO05D001045 2.3e-11 72.4 63 65.1
Dinv37832 Davidia involucrata HOM05D001035 ORTHO05D001045 2.3e-11 72.4 86 44.2
Actinidia26004 Actinidia chinensis HOM05D001035 ORTHO05D001045 3.0e-11 72.0 81 48.1
AUR62028322 Chenopodium quinoa HOM05D001035 ORTHO05D001045 3.9e-11 71.6 74 48.6
Hma1.2p1_0229F.1_g096980 Hydrangea macrophylla HOM05D001035 ORTHO05D001045 3.9e-11 71.6 75 46.7
TWI32G0492 Tripterygium wilfordii HOM05D001035 ORTHO05D001045 3.9e-11 71.6 76 48.7
Gohir.D07G017000 Gossypium hirsutum HOM05D001035 ORTHO05D001045 5.1e-11 71.2 82 51.2
HanXRQChr12g0360131 Helianthus annuus HOM05D001035 ORTHO05D001045 8.7e-11 70.5 50 62.0
Psat4g019840 Pisum sativum HOM05D001035 ORTHO05D001045 8.7e-11 70.5 89 44.9
CSS0026011 Camellia sinensis var. sinensis HOM05D001035 ORTHO05D001045 1.1e-10 70.1 86 48.8
CsaV3_5G027710 Cucumis sativus L. HOM05D001035 ORTHO05D001045 1.1e-10 70.1 84 56.0
HanXRQChr10g0311941 Helianthus annuus HOM05D001035 ORTHO05D001045 1.1e-10 70.1 48 60.4
Rhsim12G0212500 Rhododendron simsii HOM05D001035 ORTHO05D001045 1.1e-10 70.1 108 38.9
Lalb_Chr17g0343351 Lupinus albus HOM05D001035 ORTHO05D001045 1.9e-10 69.3 72 47.2
TWI23G0408 Tripterygium wilfordii HOM05D001035 ORTHO05D001045 1.9e-10 69.3 74 48.6
DCAR_024779 Daucus carota HOM05D001035 ORTHO05D001045 3.3e-10 68.6 65 56.9
Aqoxy7G04159 Aquilegia oxysepala HOM05D001035 ORTHO05D001045 4.3e-10 68.2 74 52.7
Potri.006G136400 Populus trichocarpa HOM05D001035 ORTHO05D001045 5.6e-10 67.8 81 53.1
ECA247G1913 Erigeron canadensis HOM05D001035 ORTHO05D001045 1.3e-09 66.6 55 56.4
Phvul.009G223600 Phaseolus vulgaris HOM05D001035 ORTHO05D001045 1.3e-09 66.6 58 60.3
HanXRQChr04g0094271 Helianthus annuus HOM05D001035 ORTHO05D001045 2.1e-09 65.9 56 51.8
Lsat_1_v5_gn_1_38501 Lactuca sativa HOM05D001035 ORTHO05D001045 2.1e-09 65.9 55 54.5
CDE05G3213 Ceratophyllum demersum HOM05D001035 ORTHO05D001045 2.8e-09 65.5 58 56.9
VMungo1309G0187 Vigna mungo HOM05D001035 ORTHO05D001045 2.8e-09 65.5 57 61.4
arahy.Tifrunner.gnm1.ann1.E10R0K Arachis hypogaea HOM05D001035 ORTHO05D001045 4.8e-09 64.7 60 56.7
arahy.Tifrunner.gnm1.ann1.KZ7LLB Arachis hypogaea HOM05D001035 ORTHO05D001045 4.8e-09 64.7 60 56.7
Glyma.07G043900 Glycine max HOM05D001035 ORTHO05D001045 4.8e-09 64.7 70 45.7
Glyma.16G012300 Glycine max HOM05D001035 ORTHO05D001045 4.8e-09 64.7 70 45.7
VMungo0331G1347 Vigna mungo HOM05D001035 ORTHO05D001045 4.8e-09 64.7 62 51.6
MSTRG.22526 Avicennia marina HOM05D001035 ORTHO05D001045 6.2e-09 64.3 50 56.0
Eucgr.C03195 Eucalyptus grandis HOM05D001035 ORTHO05D001045 6.2e-09 64.3 59 59.3
Medtr8g022740 Medicago truncatula HOM05D001035 ORTHO05D001045 6.2e-09 64.3 70 48.6
TPR.G16672 Trifolium pratense HOM05D001035 ORTHO05D001045 6.2e-09 64.3 70 47.1
Duzib168G2015 Durio zibethinus HOM05D001035 ORTHO05D001045 8.1e-09 63.9 132 35.6
Nitab4.5_0022008g0010 Nicotiana tabacum HOM05D001035 ORTHO05D001045 8.1e-09 63.9 64 46.9
SalBow6G2529 Salvia bowleyana HOM05D001035 ORTHO05D001045 8.1e-09 63.9 88 39.8
Phvul.010G125000 Phaseolus vulgaris HOM05D001035 ORTHO05D001045 1.4e-08 63.2 62 48.4
EL10Ac7g16464 Beta vulgaris HOM05D001035 ORTHO05D001045 2.4e-08 62.4 64 46.9
Ca_23423_v3 Cicer arietinum L. HOM05D001035 ORTHO05D001045 2.4e-08 62.4 99 37.4
Ca_30847_v3 Cicer arietinum L. HOM05D001035 ORTHO05D001045 2.4e-08 62.4 99 37.4
CDE11G0831 Ceratophyllum demersum HOM05D001035 ORTHO05D001045 3.1e-08 62.0 58 55.2
Lsat_1_v5_gn_7_35481 Lactuca sativa HOM05D001035 ORTHO05D001045 4.0e-08 61.6 68 47.1
Lj9A536G72 Lonicera japonica HOM05D001035 ORTHO05D001045 4.0e-08 61.6 75 44.0
Nitab4.5_0010313g0010 Nicotiana tabacum HOM05D001035 ORTHO05D001045 4.0e-08 61.6 64 45.3
Peaxi162Scf00038g02246 Petunia axillaris HOM05D001035 ORTHO05D001045 4.0e-08 61.6 78 41.0
Hund05711 Selenicereus undatus HOM05D001035 ORTHO05D001045 4.0e-08 61.6 58 50.0
PGSC0003DMG400028855 Solanum tuberosum HOM05D001035 ORTHO05D001045 4.0e-08 61.6 61 47.5
unitig_699.g19397 Utricularia gibba HOM05D001035 ORTHO05D001045 4.0e-08 61.6 71 47.9
CANSAT56G2505 Cannabis sativa HOM05D001035 ORTHO05D001045 5.3e-08 61.2 107 39.3
Oeu006744.1 Olea europaea HOM05D001035 ORTHO05D001045 5.3e-08 61.2 47 53.2
Glyma.15G182800 Glycine max HOM05D001035 ORTHO05D001045 6.9e-08 60.8 61 50.8
Manes.04G149500 Manihot esculenta HOM05D001035 ORTHO05D001045 6.9e-08 60.8 71 47.9
CiPaw.02G132500 Carya illinoinensis HOM05D001035 ORTHO05D001045 1.2e-07 60.1 65 52.3
Solyc12g049530.2 Solanum lycopersicum HOM05D001035 ORTHO05D001045 1.2e-07 60.1 58 48.3
SGA_v2.0_scaffold122G33314 Striga asiatica HOM05D001035 ORTHO05D001045 1.2e-07 60.1 56 48.2
Oeu055327.1 Olea europaea HOM05D001035 ORTHO05D001045 1.5e-07 59.7 46 63.0
MELO3C024320.2 Cucumis melo HOM05D001035 ORTHO05D001045 2.0e-07 59.3 106 34.0
Lj6g0016844 Lotus japonicus HOM05D001035 ORTHO05D001045 2.0e-07 59.3 72 47.2
DCAR_026430 Daucus carota HOM05D001035 ORTHO05D001045 2.6e-07 58.9 65 50.8
ClCG09G001260 Citrullus lanatus HOM05D001035 ORTHO05D001045 3.4e-07 58.5 77 41.6
Oeu015476.1 Olea europaea HOM05D001035 ORTHO05D003495 3.4e-07 58.5 48 52.1
FAN28G1581 Fragaria x ananassa HOM05D001035 ORTHO05D001045 4.5e-07 58.2 51 56.9
Gohir.A06G194300 Gossypium hirsutum HOM05D001035 ORTHO05D001045 4.5e-07 58.2 95 37.9
Nitab4.5_0009947g0030 Nicotiana tabacum HOM05D001035 ORTHO05D001045 4.5e-07 58.2 60 48.3
AUR62009938 Chenopodium quinoa HOM05D001035 ORTHO05D001045 5.8e-07 57.8 59 44.1
Glyma.09G073700 Glycine max HOM05D001035 ORTHO05D001045 5.8e-07 57.8 61 52.5
Gohir.D06G202100 Gossypium hirsutum HOM05D001035 ORTHO05D001045 5.8e-07 57.8 76 43.4
Gorai.010G235900 Gossypium raimondii HOM05D001035 ORTHO05D001045 5.8e-07 57.8 76 43.4
Nitab4.5_0003981g0010 Nicotiana tabacum HOM05D001035 ORTHO05D001045 5.8e-07 57.8 62 46.8
Lj3g0011512 Lotus japonicus HOM05D001035 ORTHO05D001045 7.6e-07 57.4 38 65.8
Actinidia21821 Actinidia chinensis HOM05D001035 ORTHO05D001045 9.9e-07 57.0 82 41.5
Cc04_g00880 Coffea canephora HOM05D001035 ORTHO05D001045 9.9e-07 57.0 53 52.8
TWI59G1345 Tripterygium wilfordii HOM05D001035 ORTHO05D001045 9.9e-07 57.0 74 39.2
Duzib235G0292 Durio zibethinus HOM05D001035 ORTHO05D001045 1.3e-06 56.6 85 37.6
AUR62001429 Chenopodium quinoa HOM05D001035 ORTHO05D001045 1.7e-06 56.2 50 48.0
CsaV3_7G034090 Cucumis sativus L. HOM05D001035 ORTHO05D001045 1.7e-06 56.2 72 40.3
Lalb_Chr10g0101211 Lupinus albus HOM05D001035 ORTHO05D001045 1.7e-06 56.2 72 40.3
PSO421G0389 Papaver somniferum HOM05D001035 ORTHO05D001045 1.7e-06 56.2 71 43.7
vmacro15072 Vaccinium macrocarpon HOM05D001035 ORTHO05D001045 1.7e-06 56.2 74 44.6
Cfa003488 Carpinus fangiana HOM05D001035 ORTHO05D001045 2.9e-06 55.5 70 45.7
arahy.Tifrunner.gnm1.ann1.MI827N Arachis hypogaea HOM05D001035 ORTHO05D001045 3.8e-06 55.1 62 41.9
Ah.15g095070 Amaranthus hybridus HOM05D001035 ORTHO05D001045 4.9e-06 54.7 44 52.3
CAN.G790.68 Capsicum annuum HOM05D001035 ORTHO05D001045 4.9e-06 54.7 41 58.5
Thecc.06G127600 Theobroma cacao HOM05D001035 ORTHO05D001045 4.9e-06 54.7 85 37.6
Haze_16107 Corylus avellana HOM05D001035 ORTHO05D001045 6.4e-06 54.3 90 38.9
QL05p001890 Quercus lobata HOM05D001035 ORTHO05D001045 8.4e-06 53.9 65 46.2


User provided reference genes

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