Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 1.1e-58 230.3 177 100.0
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 3.9e-43 178.7 166 91.0
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 1.3e-41 173.7 166 88.0
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 3.6e-41 172.2 159 90.6
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.5e-39 166.8 166 88.0
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 6.4e-38 161.4 164 86.6
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.1e-37 160.6 164 84.8
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 2.4e-32 142.9 172 79.1
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 2.6e-31 139.4 160 81.9
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.8e-31 138.3 159 81.8
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.8e-31 138.3 159 81.8
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 7.6e-31 137.9 159 81.1
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 1.3e-30 137.1 160 80.6
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 2.2e-30 136.3 160 80.6
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 2.2e-30 136.3 160 80.6
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 2.9e-30 136.0 159 78.6
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 3.8e-30 135.6 160 80.6
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 6.4e-30 134.8 156 80.1
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 1.1e-29 134.0 170 75.9
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.4e-29 132.9 159 79.2
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 4.2e-29 132.1 154 82.5
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 5.4e-29 131.7 170 75.9
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 7.1e-29 131.3 160 77.5
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 7.1e-29 131.3 159 80.5
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 7.1e-29 131.3 170 75.9
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 1.2e-28 130.6 154 81.2
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.2e-28 130.6 170 75.3
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.2e-28 130.6 158 78.5
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 2.7e-28 129.4 158 80.4
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 3.5e-28 129.0 162 63.6
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 4.6e-28 128.6 161 77.0
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 6.0e-28 128.3 160 78.1
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 6.0e-28 128.3 170 74.7
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 7.9e-28 127.9 166 77.7
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 7.9e-28 127.9 160 78.1
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.0e-27 127.5 154 81.2
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 1.3e-27 127.1 160 77.5
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.8e-27 126.7 160 78.1
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.0e-27 125.9 170 72.9
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 3.0e-27 125.9 158 76.6
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 3.0e-27 125.9 170 75.3
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 3.9e-27 125.6 170 74.7
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 6.7e-27 124.8 170 73.5
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 6.7e-27 124.8 172 72.7
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 8.7e-27 124.4 154 80.5
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 8.7e-27 124.4 160 76.2
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.1e-26 124.0 158 75.9
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 1.5e-26 123.6 158 77.8
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 1.9e-26 123.2 170 74.1
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 3.3e-26 122.5 158 76.6
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 5.6e-26 121.7 157 75.8
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 7.4e-26 121.3 160 75.0
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 2.1e-25 119.8 160 73.8
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 2.1e-25 119.8 160 74.4
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 2.8e-25 119.4 163 74.2
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 3.7e-25 119.0 169 72.8
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 6.2e-25 118.2 159 76.1
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 6.2e-25 118.2 163 74.8
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 8.1e-25 117.9 156 76.3
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 8.1e-25 117.9 162 75.3
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 1.1e-24 117.5 165 73.9
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 1.4e-24 117.1 158 75.3
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 1.4e-24 117.1 160 77.5
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 1.4e-24 117.1 158 76.6
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.8e-24 116.7 163 74.2
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 3.1e-24 115.9 161 74.5
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 3.1e-24 115.9 154 71.4
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 4.0e-24 115.5 161 67.7
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 4.0e-24 115.5 160 56.2
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 6.9e-24 114.8 160 65.6
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 1.5e-23 113.6 174 70.7
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 2.0e-23 113.2 158 74.1
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 2.0e-23 113.2 160 62.5
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 3.4e-23 112.5 191 38.2
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 5.8e-23 111.7 180 67.2
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 1.7e-22 110.2 159 73.6
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 3.8e-22 109.0 152 75.7
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 8.4e-22 107.8 173 68.8
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 8.4e-22 107.8 173 68.8
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 8.4e-22 107.8 158 72.2
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 8.4e-22 107.8 140 82.1
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 1.4e-21 107.1 174 71.3
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 1.4e-21 107.1 158 72.8
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 1.9e-21 106.7 173 69.4
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 2.5e-21 106.3 159 74.2
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 2.5e-21 106.3 173 69.4
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 2.5e-21 106.3 173 69.9
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 2.5e-21 106.3 163 68.1
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.5e-21 106.3 159 71.7
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 3.2e-21 105.9 159 73.6
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 4.2e-21 105.5 165 71.5
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 5.5e-21 105.1 173 68.8
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 7.1e-21 104.8 173 68.8
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 7.1e-21 104.8 159 71.7
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 7.1e-21 104.8 161 57.8
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 7.1e-21 104.8 157 72.6
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.5e-20 102.4 159 71.1
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 3.0e-19 99.4 155 72.3
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.9e-19 99.0 159 69.8
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 1.1e-18 97.4 155 65.8
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.1e-17 93.2 128 83.6
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 3.7e-17 92.4 161 67.1
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 1.8e-16 90.1 167 68.9
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 6.9e-16 88.2 146 39.0
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 6.9e-16 88.2 136 61.8
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.2e-15 87.4 186 31.7
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 1.5e-15 87.0 157 70.7
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 2.6e-15 86.3 59 72.9
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 2.9e-14 82.8 156 65.4
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 1.9e-13 80.1 151 66.2
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 5.5e-13 78.6 156 65.4
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 7.2e-13 78.2 57 66.7
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.7e-12 76.3 119 82.4
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 2.2e-09 66.6 111 82.0
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.4e-08 63.9 54 55.6
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.4e-08 63.9 47 57.4
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 5.3e-08 62.0 42 64.3
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 5.3e-08 62.0 57 54.4
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 6.9e-08 61.6 53 54.7
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.0e-07 60.1 40 62.5
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 4.5e-07 58.9 48 58.3
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 4.5e-07 58.9 38 65.8
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 7.7e-07 58.2 43 58.1
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 1.0e-06 57.8 40 60.0
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 1.3e-06 57.4 57 50.9
Zm00001eb344380 Zea mays HOM05D005436 ORTHO05D006215 1.7e-06 57.0 59 45.8
Hma1.2p1_0870F.1_g230930 Hydrangea macrophylla HOM05D005436 ORTHO05D006215 5.0e-06 55.5 48 64.6
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 6.5e-06 55.1 55 52.7


User provided reference genes

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