Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 2.9e-128 461.8 226 100.0
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 1.9e-79 299.7 189 80.4
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.9e-79 299.7 191 79.6
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.3e-78 297.0 189 79.9
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.7e-62 242.3 170 71.8
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 8.1e-62 241.1 193 66.3
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.8e-61 240.0 179 68.7
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 4.3e-55 218.8 198 58.6
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 8.2e-54 214.5 198 57.6
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.4e-53 213.0 198 56.6
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.1e-53 212.6 198 56.1
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 5.3e-53 211.8 199 56.3
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 2.0e-52 209.9 189 57.7
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 2.0e-52 209.9 194 58.2
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 5.8e-52 208.4 205 54.1
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.0e-51 207.6 187 59.4
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 1.0e-51 207.6 183 60.7
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 3.8e-51 205.7 189 58.2
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 3.8e-51 205.7 181 58.6
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 5.0e-51 205.3 164 67.1
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 6.5e-51 204.9 192 55.7
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 8.4e-51 204.5 187 58.3
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 8.4e-51 204.5 187 58.3
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 8.4e-51 204.5 182 58.2
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 8.4e-51 204.5 184 57.6
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 1.4e-50 203.8 181 60.8
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 1.4e-50 203.8 173 60.7
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 4.2e-50 202.2 214 50.9
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 7.2e-50 201.4 180 58.3
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 9.3e-50 201.1 205 52.7
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 1.2e-49 200.7 183 56.3
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.2e-49 200.7 173 60.7
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 1.6e-49 200.3 183 56.3
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 1.6e-49 200.3 182 57.1
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.6e-49 200.3 175 60.6
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.6e-49 200.3 173 60.1
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 2.7e-49 199.5 185 55.7
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 2.7e-49 199.5 160 64.4
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 2.7e-49 199.5 178 59.0
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 2.7e-49 199.5 190 55.8
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 3.5e-49 199.1 191 55.5
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.0e-48 197.6 174 58.6
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 1.3e-48 197.2 185 55.1
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 1.8e-48 196.8 142 66.9
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 3.0e-48 196.1 183 58.5
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 3.9e-48 195.7 174 58.0
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 5.1e-48 195.3 174 60.3
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 6.7e-48 194.9 175 58.3
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 6.7e-48 194.9 188 53.7
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 6.7e-48 194.9 174 59.2
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 8.7e-48 194.5 175 58.3
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 1.1e-47 194.1 186 55.4
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.5e-47 193.7 189 54.5
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 1.5e-47 193.7 175 59.4
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 5.7e-47 191.8 188 54.3
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 7.4e-47 191.4 184 56.5
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 9.7e-47 191.0 183 59.0
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 1.6e-46 190.3 175 56.0
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.6e-46 190.3 130 68.5
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 2.2e-46 189.9 190 52.1
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 6.3e-46 188.3 180 55.6
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 1.1e-45 187.6 175 55.4
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 1.1e-45 187.6 205 51.7
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 1.8e-45 186.8 147 63.9
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 2.4e-45 186.4 211 51.2
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 4.1e-45 185.7 190 52.6
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 4.1e-45 185.7 182 56.0
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 5.3e-45 185.3 189 51.9
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 1.5e-44 183.7 194 54.1
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 1.5e-44 183.7 149 63.8
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 3.4e-44 182.6 180 52.2
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 3.4e-44 182.6 123 71.5
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 4.5e-44 182.2 177 53.7
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 1.0e-43 181.0 190 48.9
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 1.0e-43 181.0 173 57.2
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.3e-43 180.6 178 57.3
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.3e-43 180.6 178 57.3
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 1.7e-43 180.3 130 70.8
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 2.2e-43 179.9 124 70.2
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 2.9e-43 179.5 122 72.1
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 3.8e-43 179.1 193 49.2
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 5.0e-43 178.7 123 71.5
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 1.9e-42 176.8 200 49.5
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.5e-42 176.4 178 56.7
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 5.5e-42 175.3 112 76.8
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 7.2e-42 174.9 125 66.4
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 1.2e-41 174.1 128 65.6
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 2.1e-41 173.3 125 68.8
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 6.1e-41 171.8 179 49.7
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 3.0e-40 169.5 173 52.0
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 6.7e-40 168.3 175 49.1
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 2.0e-39 166.8 133 62.4
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 5.7e-39 165.2 150 56.7
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 3.7e-38 162.5 175 48.0
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 3.7e-38 162.5 181 48.6
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 3.7e-38 162.5 179 46.9
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 4.8e-38 162.2 169 51.5
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 1.1e-37 161.0 123 61.8
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 4.1e-37 159.1 125 61.6
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.7e-35 153.7 178 46.1
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.8e-35 152.5 176 44.9
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 2.5e-34 149.8 178 45.5
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 5.5e-34 148.7 184 46.7
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 7.2e-34 148.3 177 45.8
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 9.4e-34 147.9 181 47.0
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 3.6e-33 146.0 131 55.7
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 1.4e-32 144.1 109 67.0
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 5.1e-32 142.1 103 68.0
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 4.4e-31 139.0 137 50.4
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 5.7e-31 138.7 151 48.3
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 7.4e-31 138.3 146 52.1
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.1e-29 134.4 176 40.9
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 7.0e-29 131.7 96 61.5
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 7.7e-28 128.3 150 47.3
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 1.7e-27 127.1 146 46.6
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.9e-27 126.3 151 43.0
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 6.5e-27 125.2 121 52.9
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 1.5e-26 124.0 99 61.6
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 2.7e-25 119.8 80 68.8
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.5e-20 102.4 141 40.4
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.0e-19 99.0 145 39.3
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.1e-18 97.8 162 36.4
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 8.3e-14 81.6 114 43.9
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 9.1e-13 78.2 79 54.4
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.9e-11 73.2 42 78.6
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 3.2e-10 69.7 79 41.8
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 3.2e-10 69.7 100 40.0
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 8.3e-06 55.1 43 58.1


User provided reference genes

Program Settings