Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 4.4e-228 794.3 397 100.0
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.1e-143 513.8 346 78.3
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 6.3e-142 508.1 336 78.9
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 3.4e-140 502.3 346 76.3
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 7.7e-140 501.1 343 76.1
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 4.8e-134 481.9 362 71.3
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 8.2e-134 481.1 332 75.6
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 1.2e-132 477.2 336 73.2
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 3.5e-132 475.7 336 72.9
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 5.9e-132 474.9 275 86.5
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 3.2e-130 469.2 336 71.7
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 7.0e-125 451.4 248 90.3
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 6.5e-123 444.9 335 69.3
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 1.5e-122 443.7 339 68.7
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 1.5e-122 443.7 335 69.3
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 1.9e-122 443.4 349 67.0
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.6e-121 440.3 336 67.9
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.6e-121 440.3 336 67.9
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 3.6e-121 439.1 334 68.3
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.8e-120 436.8 334 68.0
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 1.8e-120 436.8 339 68.7
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.0e-119 433.3 334 67.4
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.0e-119 433.3 334 67.4
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 3.4e-119 432.6 335 67.8
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 7.5e-119 431.4 336 67.0
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 9.7e-119 431.0 335 68.1
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.3e-118 430.6 335 67.2
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 1.3e-118 430.6 335 67.2
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 2.8e-118 429.5 336 66.7
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 4.8e-118 428.7 339 66.7
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 8.3e-118 427.9 313 72.8
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 8.3e-118 427.9 335 67.2
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 2.4e-117 426.4 334 67.4
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.4e-117 426.4 337 67.7
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 2.4e-117 426.4 273 76.9
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 3.1e-117 426.0 340 66.8
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 5.3e-117 425.2 333 65.5
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 5.3e-117 425.2 336 67.6
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 5.3e-117 425.2 340 66.5
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 5.3e-117 425.2 339 66.7
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 7.0e-117 424.9 337 67.4
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 9.1e-117 424.5 337 67.1
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 1.6e-116 423.7 335 66.0
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 2.0e-116 423.3 336 67.9
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 2.0e-116 423.3 336 66.4
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 7.7e-116 421.4 336 67.3
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 1.0e-115 421.0 336 65.5
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 1.0e-115 421.0 336 67.3
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 1.0e-115 421.0 359 61.0
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.3e-115 420.6 271 76.4
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 2.9e-115 419.5 335 65.7
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 2.9e-115 419.5 335 67.5
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 3.8e-115 419.1 336 67.0
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 6.5e-115 418.3 336 64.6
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 8.5e-115 417.9 338 66.0
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 1.1e-114 417.5 335 64.8
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 1.5e-114 417.2 333 64.6
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.5e-114 417.2 335 64.5
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 1.9e-114 416.8 337 64.1
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.9e-114 416.8 335 65.1
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 3.2e-114 416.0 271 75.6
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 3.2e-114 416.0 340 64.1
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 3.2e-114 416.0 357 64.1
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 4.2e-114 415.6 335 64.2
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 4.2e-114 415.6 333 65.8
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 5.5e-114 415.2 335 65.1
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 7.2e-114 414.8 336 65.2
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 7.2e-114 414.8 335 65.1
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 9.4e-114 414.5 337 64.4
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 1.2e-113 414.1 337 64.7
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 1.6e-113 413.7 333 63.7
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.1e-113 413.3 335 65.1
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 2.7e-113 412.9 335 64.5
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 2.7e-113 412.9 306 68.6
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 3.6e-113 412.5 316 68.0
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 4.7e-113 412.1 333 63.1
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 4.7e-113 412.1 277 72.9
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 1.4e-112 410.6 333 63.4
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 2.3e-112 409.8 334 63.2
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 2.3e-112 409.8 337 63.5
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 2.3e-112 409.8 337 63.5
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 3.0e-112 409.5 337 63.5
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 3.0e-112 409.5 333 64.0
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 4.0e-112 409.1 337 63.5
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 5.2e-112 408.7 336 63.4
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 6.8e-112 408.3 335 63.9
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 6.8e-112 408.3 273 73.3
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 8.8e-112 407.9 309 67.6
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 1.2e-111 407.5 338 62.1
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 1.5e-111 407.1 274 73.0
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 2.0e-111 406.8 336 63.1
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 2.0e-111 406.8 271 72.7
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 2.0e-111 406.8 336 62.8
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 2.6e-111 406.4 273 72.9
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 3.4e-111 406.0 333 62.5
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 5.7e-111 405.2 333 63.1
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 5.7e-111 405.2 335 63.0
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 9.8e-111 404.4 309 67.3
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 9.8e-111 404.4 334 63.5
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 1.3e-110 404.1 341 62.8
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 1.7e-110 403.7 273 72.2
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 2.8e-110 402.9 336 62.2
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 3.7e-110 402.5 335 62.1
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 3.7e-110 402.5 273 72.9
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 4.8e-110 402.1 336 63.1
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 6.3e-110 401.7 336 64.0
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 6.3e-110 401.7 335 62.7
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 8.3e-110 401.4 312 67.0
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 1.4e-109 400.6 333 61.9
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 1.8e-109 400.2 288 70.5
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 9.1e-109 397.9 271 71.6
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 9.1e-109 397.9 402 55.7
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 1.2e-108 397.5 336 62.2
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 1.6e-108 397.1 274 70.4
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 2.0e-108 396.7 336 62.2
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 2.3e-107 393.3 336 62.8
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 2.9e-107 392.9 335 62.7
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 1.9e-106 390.2 285 66.7
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 4.2e-106 389.0 334 62.0
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 5.5e-106 388.7 333 60.4
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 7.2e-106 388.3 283 67.1
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 1.6e-105 387.1 283 67.5
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 2.8e-105 386.3 334 61.7
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 8.0e-105 384.8 311 65.0
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 2.8e-102 376.3 273 67.8
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 8.3e-102 374.8 304 65.1
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 5.0e-99 365.5 282 66.3
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 1.0e-96 357.8 195 88.7
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 2.9e-94 349.7 335 55.5
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 1.4e-93 347.4 340 55.0
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 1.3e-91 340.9 275 62.5
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 2.3e-88 330.1 222 74.8
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 1.9e-82 310.5 219 74.0
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 5.6e-82 308.9 336 54.2
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.8e-73 280.0 161 83.2
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 2.3e-67 260.4 238 55.0
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 8.1e-65 251.9 196 65.8
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 3.1e-64 250.0 282 45.4
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 7.9e-52 208.8 117 88.9
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 1.3e-25 121.7 135 49.6
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.6e-18 97.4 72 56.9
PGSC0003DMG400013620 Solanum tuberosum HOM05D000003 ORTHO05D000004 4.5e-07 60.1 65 43.1
PGSC0003DMG400024990 Solanum tuberosum HOM05D000003 ORTHO05D000004 4.5e-07 60.1 65 43.1
PGSC0003DMG400009750 Solanum tuberosum HOM05D000003 ORTHO05D000004 1.0e-06 58.9 65 46.2
PGSC0003DMG400027303 Solanum tuberosum HOM05D000003 ORTHO05D000004 2.2e-06 57.8 65 44.6
PGSC0003DMG400006509 Solanum tuberosum HOM05D000003 ORTHO05D000004 6.5e-06 56.2 65 43.1
PGSC0003DMG400025209 Solanum tuberosum HOM05D031342 ORTHO05D011642 6.5e-06 56.2 65 43.1


User provided reference genes

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