Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 2.6e-120 435.3 203 100.0
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 5.8e-43 178.3 88 96.6
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 4.9e-42 175.3 88 94.3
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.4e-41 172.9 88 94.3
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.6e-40 170.2 88 92.0
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 2.3e-39 166.4 88 88.6
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 9.6e-38 161.0 90 83.3
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 9.6e-38 161.0 90 83.3
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 1.3e-37 160.6 116 69.0
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 2.8e-37 159.5 88 84.1
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 3.7e-37 159.1 88 85.2
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 3.7e-37 159.1 88 83.0
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 3.7e-37 159.1 88 83.0
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 8.1e-37 157.9 88 81.8
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 8.1e-37 157.9 88 86.4
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 1.1e-36 157.5 88 83.0
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 2.4e-36 156.4 88 83.0
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 5.3e-36 155.2 88 80.7
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 5.3e-36 155.2 88 83.0
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 5.3e-36 155.2 88 83.0
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 1.2e-35 154.1 117 65.0
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 1.2e-35 154.1 88 84.1
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 1.5e-35 153.7 88 80.7
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 2.6e-35 152.9 88 79.5
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 3.4e-35 152.5 88 83.0
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 3.4e-35 152.5 88 83.0
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 5.8e-35 151.8 88 80.7
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 5.8e-35 151.8 88 80.7
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 5.8e-35 151.8 88 80.7
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 5.8e-35 151.8 128 58.6
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 5.8e-35 151.8 88 83.0
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 1.0e-34 151.0 88 81.8
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 1.3e-34 150.6 88 80.7
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 1.7e-34 150.2 88 80.7
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 2.2e-34 149.8 88 80.7
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 2.2e-34 149.8 88 80.7
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 2.2e-34 149.8 88 80.7
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 2.9e-34 149.4 88 79.5
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 2.9e-34 149.4 88 77.3
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 2.9e-34 149.4 88 79.5
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 3.8e-34 149.1 88 79.5
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 3.8e-34 149.1 88 79.5
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 3.8e-34 149.1 88 79.5
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 4.9e-34 148.7 88 80.7
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 4.9e-34 148.7 116 64.7
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 6.5e-34 148.3 88 77.3
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 1.1e-33 147.5 88 80.7
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 1.9e-33 146.7 88 76.1
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 1.9e-33 146.7 88 79.5
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 2.5e-33 146.4 88 79.5
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 2.5e-33 146.4 88 78.4
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 2.5e-33 146.4 88 79.5
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 3.2e-33 146.0 88 75.0
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 3.2e-33 146.0 88 79.5
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 3.2e-33 146.0 88 77.3
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 5.5e-33 145.2 88 78.4
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 5.5e-33 145.2 88 75.0
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 5.5e-33 145.2 88 75.0
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 7.1e-33 144.8 88 77.3
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 9.3e-33 144.4 126 61.1
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 9.3e-33 144.4 88 75.0
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 1.2e-32 144.1 88 77.3
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 1.6e-32 143.7 88 73.9
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 1.6e-32 143.7 88 73.9
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 1.6e-32 143.7 88 73.9
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 2.7e-32 142.9 88 73.9
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 2.7e-32 142.9 88 73.9
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 2.7e-32 142.9 88 73.9
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.7e-32 142.9 88 77.3
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.7e-32 142.9 88 77.3
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 2.7e-32 142.9 87 78.2
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 2.7e-32 142.9 88 73.9
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 3.5e-32 142.5 88 77.3
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 3.5e-32 142.5 88 73.9
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 4.6e-32 142.1 88 77.3
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 4.6e-32 142.1 88 75.0
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 4.6e-32 142.1 88 75.0
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 6.0e-32 141.7 88 72.7
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 6.0e-32 141.7 88 72.7
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 7.9e-32 141.4 85 72.9
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 7.9e-32 141.4 88 76.1
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 7.9e-32 141.4 88 77.3
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 1.0e-31 141.0 85 72.9
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 1.3e-31 140.6 88 76.1
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 1.3e-31 140.6 88 71.6
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 1.3e-31 140.6 84 79.8
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 1.8e-31 140.2 84 81.0
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 1.8e-31 140.2 84 81.0
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.8e-31 140.2 88 76.1
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 1.8e-31 140.2 84 79.8
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 1.8e-31 140.2 84 79.8
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 3.0e-31 139.4 88 76.1
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 1.5e-30 137.1 88 75.0
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 1.5e-30 137.1 88 71.6
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 1.5e-30 137.1 88 72.7
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 1.9e-30 136.7 88 72.7
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 1.9e-30 136.7 84 77.4
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 2.5e-30 136.3 88 72.7
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 2.5e-30 136.3 88 73.9
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 2.5e-30 136.3 87 75.9
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 4.3e-30 135.6 87 73.6
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 7.4e-30 134.8 88 73.9
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 1.3e-29 134.0 91 70.3
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 1.6e-29 133.7 88 73.9
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 1.6e-29 133.7 88 70.5
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 2.8e-29 132.9 84 73.8
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 4.8e-29 132.1 88 73.9
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 1.4e-28 130.6 85 71.8
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 4.6e-24 115.5 88 64.8
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 4.6e-24 115.5 88 64.8
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 4.2e-17 92.4 59 71.2
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 1.2e-16 90.9 83 55.4
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 6.1e-16 88.6 107 46.7
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 1.7e-13 80.5 110 41.8
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 3.4e-11 72.8 45 80.0
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 4.2e-09 65.9 51 64.7
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 4.2e-09 65.9 96 38.5
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 2.1e-08 63.5 49 65.3
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 4.7e-08 62.4 51 60.8


User provided reference genes

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