Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 5.5e-40 167.2 83 100.0
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 4.2e-32 141.0 73 93.2
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 6.7e-30 133.7 73 84.9
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 4.8e-28 127.5 73 86.3
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 4.8e-28 127.5 73 86.3
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 1.6e-26 122.5 74 83.8
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.6e-26 122.5 72 77.8
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 3.5e-26 121.3 73 78.1
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.5e-26 121.3 73 78.1
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 1.0e-25 119.8 73 78.1
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.0e-25 119.8 73 76.7
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.0e-25 119.8 73 76.7
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.0e-25 119.8 73 76.7
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 1.3e-25 119.4 73 76.7
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 1.3e-25 119.4 73 76.7
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.8e-25 117.9 73 75.3
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 3.8e-25 117.9 73 78.1
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 3.8e-25 117.9 73 79.5
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 6.5e-25 117.1 73 78.1
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 1.1e-24 116.3 74 74.3
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.9e-24 115.5 73 76.7
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 1.9e-24 115.5 73 76.7
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 3.2e-24 114.8 73 75.3
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 3.2e-24 114.8 73 76.7
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 3.2e-24 114.8 73 76.7
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 3.2e-24 114.8 70 78.6
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 5.5e-24 114.0 72 76.4
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 5.5e-24 114.0 73 72.6
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 5.5e-24 114.0 72 76.4
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 5.5e-24 114.0 73 74.0
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 5.5e-24 114.0 73 75.3
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 5.5e-24 114.0 73 75.3
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 5.5e-24 114.0 70 75.7
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 7.2e-24 113.6 72 76.4
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 7.2e-24 113.6 73 74.0
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 7.2e-24 113.6 73 75.3
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 1.2e-23 112.8 73 69.9
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 1.6e-23 112.5 73 75.3
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.6e-23 112.5 73 72.6
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.6e-23 112.5 73 72.6
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.6e-23 112.5 73 72.6
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 3.6e-23 111.3 74 70.3
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 3.6e-23 111.3 74 70.3
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 4.7e-23 110.9 73 72.6
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 4.7e-23 110.9 70 74.3
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 8.0e-23 110.2 72 73.6
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 8.0e-23 110.2 73 74.0
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 8.0e-23 110.2 73 74.0
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 8.0e-23 110.2 73 72.6
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 1.0e-22 109.8 73 74.0
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 1.0e-22 109.8 73 68.5
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 1.4e-22 109.4 73 72.6
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 1.4e-22 109.4 69 78.3
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.4e-22 109.4 65 78.5
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 1.4e-22 109.4 70 77.1
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 1.4e-22 109.4 73 71.2
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 1.8e-22 109.0 73 69.9
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 1.8e-22 109.0 73 69.9
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 1.8e-22 109.0 73 69.9
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 1.8e-22 109.0 73 69.9
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 1.8e-22 109.0 63 77.8
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.8e-22 109.0 73 69.9
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.8e-22 109.0 73 69.9
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.8e-22 109.0 73 67.1
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 2.3e-22 108.6 68 75.0
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 3.0e-22 108.2 72 72.2
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 3.0e-22 108.2 72 72.2
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 3.0e-22 108.2 62 77.4
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.0e-22 108.2 73 72.6
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 3.0e-22 108.2 73 72.6
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 3.0e-22 108.2 72 70.8
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 3.0e-22 108.2 73 68.5
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 3.0e-22 108.2 73 69.9
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 4.0e-22 107.8 73 71.2
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 4.0e-22 107.8 73 71.2
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 5.2e-22 107.5 73 71.2
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 5.2e-22 107.5 73 69.9
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.7e-22 107.1 76 72.4
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 6.7e-22 107.1 69 76.8
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 6.7e-22 107.1 72 70.8
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 8.8e-22 106.7 73 71.2
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 8.8e-22 106.7 62 79.0
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 1.1e-21 106.3 73 69.9
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 1.1e-21 106.3 62 77.4
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 1.1e-21 106.3 62 77.4
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 1.1e-21 106.3 62 77.4
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 1.1e-21 106.3 73 69.9
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.1e-21 106.3 72 68.1
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.1e-21 106.3 73 67.1
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 1.1e-21 106.3 65 75.4
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 1.5e-21 105.9 61 77.0
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 1.5e-21 105.9 62 75.8
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 1.5e-21 105.9 61 77.0
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 1.5e-21 105.9 62 75.8
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 1.5e-21 105.9 61 77.0
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 1.5e-21 105.9 61 77.0
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 1.5e-21 105.9 61 77.0
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 1.5e-21 105.9 61 77.0
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.5e-21 105.9 62 75.8
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 2.0e-21 105.5 73 65.8
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 2.0e-21 105.5 72 69.4
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 2.0e-21 105.5 69 73.9
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 2.0e-21 105.5 73 68.5
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 2.6e-21 105.1 62 75.8
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 2.6e-21 105.1 73 71.2
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 4.4e-21 104.4 60 80.0
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 4.4e-21 104.4 69 73.9
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 4.4e-21 104.4 64 75.0
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 5.7e-21 104.0 73 68.5
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 7.5e-21 103.6 69 73.9
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 7.5e-21 103.6 69 73.9
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 7.5e-21 103.6 73 68.5
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 9.7e-21 103.2 73 68.5
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 9.7e-21 103.2 73 65.8
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 9.7e-21 103.2 66 69.7
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 9.7e-21 103.2 73 67.1
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 1.3e-20 102.8 73 67.1
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 1.3e-20 102.8 66 69.7
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 1.7e-20 102.4 73 67.1
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 1.7e-20 102.4 61 73.8
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 1.7e-20 102.4 73 65.8
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 2.2e-20 102.1 73 67.1
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 2.8e-20 101.7 73 65.8
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 3.7e-20 101.3 73 69.9
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 6.3e-20 100.5 73 67.1
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 6.3e-20 100.5 69 72.5
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 8.2e-20 100.1 62 72.6
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.4e-19 99.4 73 65.8
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 2.4e-19 98.6 81 59.3
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 2.4e-19 98.6 69 72.5
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 3.1e-19 98.2 62 79.0
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 4.1e-19 97.8 67 68.7
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 5.3e-19 97.4 62 69.4
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 7.0e-19 97.1 61 70.5
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 9.1e-19 96.7 95 55.8
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.5e-18 94.7 89 58.4
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 3.5e-18 94.7 101 51.5
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 2.2e-17 92.0 75 61.3
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 3.8e-17 91.3 75 61.3
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 5.0e-17 90.9 80 60.0
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 6.5e-17 90.5 97 51.5
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.1e-16 89.7 57 77.2
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 1.1e-16 89.7 98 53.1
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 1.1e-16 89.7 61 70.5
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 3.2e-16 88.2 58 67.2
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 1.2e-15 86.3 57 73.7
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 2.1e-15 85.5 57 71.9
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 4.7e-15 84.3 57 68.4
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 6.1e-15 84.0 57 71.9
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 6.1e-15 84.0 57 71.9
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 6.1e-15 84.0 57 71.9
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 1.4e-14 82.8 57 70.2
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.4e-14 82.8 89 48.3
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 1.8e-14 82.4 58 69.0
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 2.3e-14 82.0 57 68.4
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 3.0e-14 81.6 63 61.9
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 3.0e-14 81.6 57 66.7
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 3.0e-14 81.6 57 68.4
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 3.0e-14 81.6 57 68.4
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 4.0e-14 81.3 59 59.3
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 5.2e-14 80.9 57 66.7
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 6.8e-14 80.5 57 68.4
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 6.8e-14 80.5 121 42.1
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 8.8e-14 80.1 57 66.7
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.6e-13 78.6 54 66.7
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 5.7e-13 77.4 59 52.5
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 1.3e-12 76.3 49 67.3
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 1.3e-12 76.3 59 52.5
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.3e-12 76.3 57 61.4
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 4.8e-12 74.3 51 64.7
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.4e-11 72.0 58 56.9
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 3.1e-11 71.6 59 54.2
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 7.7e-10 67.0 57 56.1
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.2e-09 65.5 48 62.5
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 3.8e-09 64.7 40 70.0
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 2.5e-08 62.0 38 71.1
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 3.2e-08 61.6 45 64.4
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 7.2e-08 60.5 58 50.0
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.6e-07 59.3 58 48.3
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 8.0e-07 57.0 33 75.8
MCO16G664 Micromonas commoda HOM05D003756 ORTHO05D004304 2.3e-06 55.5 51 49.0


User provided reference genes

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