Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1493.4 743 100.0
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1394.8 744 93.3
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1392.1 743 93.3
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1386.7 746 93.0
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1383.2 747 92.8
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1383.2 746 92.9
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1307.4 745 85.9
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1294.3 743 85.9
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1294.3 748 84.8
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1289.6 747 84.7
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1288.1 776 82.6
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1285.4 745 85.0
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1284.6 740 86.2
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1283.9 743 83.2
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1281.2 745 83.6
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1280.8 748 84.5
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1280.0 749 84.1
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1278.1 747 84.2
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1277.3 747 83.9
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1275.4 748 84.0
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1275.0 746 84.2
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1274.2 742 83.8
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1273.8 745 83.9
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1273.5 746 83.8
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1273.1 745 84.4
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1272.7 744 82.7
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1272.7 746 83.5
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1271.5 746 83.4
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1271.5 747 83.0
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1270.8 746 84.7
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1270.4 745 83.0
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1269.2 745 83.2
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1267.3 745 83.9
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1266.5 748 83.7
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1265.0 746 82.8
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1263.8 750 83.6
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1263.4 747 83.3
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1262.7 746 82.8
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1262.3 745 83.5
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1261.9 742 83.6
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1260.0 749 82.8
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1260.0 745 83.4
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1258.4 745 83.5
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1257.3 757 82.4
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1257.3 744 83.2
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1256.5 799 79.3
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1255.7 742 83.4
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1255.7 744 81.7
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1255.4 745 82.3
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1254.6 746 83.0
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1254.2 744 83.2
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1253.8 746 82.7
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1253.4 747 82.3
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1252.7 749 82.1
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1251.5 745 83.0
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1250.0 745 81.9
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1249.2 747 82.3
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1247.3 744 82.7
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1244.2 746 81.5
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1239.6 746 82.2
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1239.2 712 84.7
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1238.8 744 80.9
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1238.8 662 92.7
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1236.5 748 81.6
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1234.9 745 82.0
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1234.9 746 81.9
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1234.6 747 81.8
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1233.4 746 81.2
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1232.6 747 82.5
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1231.5 747 80.7
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1228.8 745 80.7
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1228.8 749 81.8
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1228.0 746 79.8
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1227.6 746 81.6
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1227.2 755 81.1
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1226.8 746 81.2
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1226.5 840 73.2
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1226.1 745 81.5
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1225.7 746 80.8
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1224.2 690 85.4
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1223.8 749 80.8
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1223.4 742 81.0
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1223.0 747 80.7
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1222.6 757 80.4
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1222.2 746 79.9
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1220.7 746 79.9
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1219.5 746 79.8
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1219.1 745 79.6
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1217.6 746 79.6
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1216.1 738 81.2
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1215.3 746 79.5
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1215.3 746 79.5
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1213.7 746 80.0
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1209.5 744 78.9
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1209.5 745 79.2
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1208.0 745 79.2
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1207.2 744 80.4
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1206.0 745 78.7
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1205.7 751 78.7
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1205.7 746 79.0
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1197.6 742 79.6
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1189.9 778 75.7
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1183.7 745 78.9
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1179.1 714 79.4
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1178.7 656 87.2
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1171.4 754 77.1
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1170.6 743 77.3
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1164.1 748 77.8
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1140.6 656 83.7
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1140.2 746 77.5
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1135.6 656 83.4
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1129.4 744 75.4
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1128.2 719 77.2
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 0.0e+00 1125.9 1055 58.3
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1113.2 754 73.5
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1112.4 656 83.2
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 2.1e-308 1062.0 623 84.1
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 4.7e-308 1060.8 748 73.3
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.9e-281 971.1 676 69.5
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.9e-281 971.1 676 69.5
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 1.4e-280 969.5 678 67.4
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.4e-280 968.8 676 69.4
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.7e-279 965.3 683 68.7
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 2.3e-278 962.2 677 68.4
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 1.2e-276 956.4 676 68.6
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 9.9e-258 893.6 596 74.7
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 5.1e-254 881.3 596 74.2
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 2.2e-249 865.9 678 61.2
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 6.5e-233 811.2 679 58.9
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 1.7e-225 786.6 681 58.3
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 1.0e-214 750.7 677 57.6
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 1.6e-207 726.9 673 60.3
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 1.0e-198 697.6 676 53.1
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 1.1e-174 617.8 708 46.8
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 3.8e-164 582.8 320 90.0
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 1.6e-162 577.4 361 75.9
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 5.4e-155 552.4 305 85.6
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 4.5e-141 506.1 301 84.7
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 2.5e-131 473.8 305 76.1
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 3.2e-131 473.4 301 78.7
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 6.3e-119 432.6 292 71.2
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 9.1e-110 402.1 237 82.7
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 4.2e-99 366.7 241 75.5
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.0e-97 362.1 296 66.2
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.1e-94 352.1 296 64.2
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 2.9e-92 344.0 219 76.7
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 8.8e-89 332.4 221 76.5
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 2.5e-75 287.7 172 78.5
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 2.7e-69 267.7 391 45.3
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 1.9e-67 261.5 369 39.8
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 2.1e-66 258.1 126 96.8
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 2.2e-63 248.1 160 77.5
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 2.5e-59 234.6 114 96.5
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 9.5e-59 232.6 260 51.9
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 2.1e-50 204.9 139 77.0
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 3.5e-45 187.6 117 77.8
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 4.0e-41 174.1 156 59.6
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 1.1e-38 166.0 102 71.6
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 4.2e-38 164.1 122 68.9
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 3.9e-36 157.5 86 83.7
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 1.4e-33 149.1 141 51.8
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 9.9e-32 142.9 113 66.4
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 4.2e-30 137.5 83 80.7
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 1.2e-29 136.0 137 58.4
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 1.9e-27 128.6 105 61.0
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 6.2e-26 123.6 61 91.8
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 1.7e-23 115.5 221 30.8
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 2.9e-23 114.8 99 61.6
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.4e-22 112.5 139 51.8
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 2.2e-15 88.6 50 78.0
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 7.1e-14 83.6 56 73.2
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.1e-11 76.3 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 3.3e-11 74.7 42 85.7
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 2.2e-10 72.0 38 89.5


User provided reference genes

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