Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 2.4e-156 555.4 278 100.0
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 4.3e-97 358.6 261 70.9
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 9.6e-97 357.5 261 70.5
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 4.3e-89 332.0 274 65.0
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 3.4e-86 322.4 231 71.9
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 1.1e-84 317.4 231 70.1
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 5.3e-79 298.5 152 92.1
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 1.2e-67 260.8 271 51.7
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 7.9e-67 258.1 275 52.7
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 8.8e-66 254.6 230 59.1
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 6.9e-63 245.0 220 58.6
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 4.5e-62 242.3 259 49.8
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 2.7e-59 233.0 220 52.3
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 7.9e-59 231.5 273 49.1
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 3.9e-58 229.2 281 45.9
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 6.7e-58 228.4 271 46.9
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 1.7e-56 223.8 220 53.2
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 2.2e-56 223.4 273 45.8
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 3.7e-56 222.6 261 47.1
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 4.8e-56 222.2 216 51.4
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 1.1e-55 221.1 274 45.3
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 7.0e-55 218.4 273 45.4
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 2.6e-54 216.5 220 49.5
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 3.5e-54 216.1 278 46.0
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 7.7e-54 214.9 249 49.4
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 1.0e-53 214.5 261 45.2
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 3.8e-53 212.6 274 44.9
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 5.0e-53 212.2 223 51.1
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 5.0e-53 212.2 276 46.0
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 6.5e-53 211.8 272 43.4
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 8.5e-53 211.5 263 44.9
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 2.5e-52 209.9 241 50.2
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 4.2e-52 209.1 271 44.6
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 7.2e-52 208.4 222 48.6
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 2.7e-51 206.5 221 48.4
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 3.6e-51 206.1 225 50.7
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 1.4e-50 204.1 276 42.8
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 2.3e-50 203.4 284 41.9
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 3.0e-50 203.0 281 42.0
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 3.0e-50 203.0 278 42.1
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 2.0e-49 200.3 225 47.6
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.3e-48 197.6 231 49.4
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 4.8e-48 195.7 223 47.5
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 8.2e-48 194.9 239 46.9
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.4e-47 194.1 231 48.5
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 1.4e-47 194.1 225 50.7
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 2.4e-47 193.4 232 47.8
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 3.1e-47 193.0 223 49.3
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 3.1e-47 193.0 239 46.0
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 4.1e-47 192.6 267 45.3
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 7.0e-47 191.8 192 47.9
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 9.1e-47 191.4 231 48.5
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 1.2e-46 191.0 271 41.3
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 1.2e-46 191.0 239 44.8
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 2.0e-46 190.3 194 46.4
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.6e-46 189.9 231 48.1
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.6e-46 189.9 231 48.1
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.6e-46 189.9 231 48.1
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 4.5e-46 189.1 219 46.1
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 1.0e-45 188.0 223 46.2
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 3.8e-45 186.0 258 41.9
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 8.5e-45 184.9 260 41.9
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 1.1e-44 184.5 250 42.8
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 1.5e-44 184.1 220 44.1
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 1.9e-44 183.7 277 38.3
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 1.9e-44 183.7 277 38.3
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 1.9e-44 183.7 277 38.3
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 1.9e-44 183.7 226 46.0
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 2.5e-44 183.3 225 49.3
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 7.2e-44 181.8 286 39.9
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 7.2e-44 181.8 271 39.1
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 1.2e-43 181.0 233 43.3
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 1.6e-43 180.6 235 41.3
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 2.7e-43 179.9 169 48.5
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 2.7e-43 179.9 227 42.7
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 4.7e-43 179.1 221 44.3
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 1.4e-42 177.6 168 48.2
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 1.8e-42 177.2 279 38.0
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 1.8e-42 177.2 221 42.1
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 1.8e-42 177.2 276 40.2
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 4.0e-42 176.0 227 43.6
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 5.2e-42 175.6 250 40.8
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 6.8e-42 175.3 210 44.8
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 8.8e-42 174.9 224 44.2
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 1.2e-41 174.5 220 41.4
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 2.6e-41 173.3 271 37.6
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 3.4e-41 172.9 271 37.6
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 2.2e-40 170.2 226 44.7
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 2.8e-40 169.9 278 38.1
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 3.7e-40 169.5 182 47.8
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 4.8e-40 169.1 266 39.8
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 8.3e-40 168.3 275 36.7
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 1.4e-39 167.5 227 42.7
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 1.8e-39 167.2 181 47.0
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 2.4e-39 166.8 168 49.4
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 7.0e-39 165.2 221 41.2
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 2.5e-36 156.8 260 39.6
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 1.0e-34 151.4 141 54.6
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 5.2e-34 149.1 168 42.9
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 5.2e-34 149.1 168 42.9
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 1.7e-32 144.1 265 35.8
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 2.4e-31 140.2 221 40.7
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 9.1e-31 138.3 266 35.7
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 9.1e-31 138.3 138 45.7
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 2.8e-27 126.7 162 38.3
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 3.6e-27 126.3 136 47.1
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 5.7e-25 119.0 260 32.7
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 5.7e-25 119.0 274 33.2
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 9.8e-25 118.2 90 56.7
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 4.1e-23 112.8 118 41.5
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 7.0e-23 112.1 69 66.7
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 5.9e-22 109.0 229 33.6
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 7.8e-22 108.6 122 42.6
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 1.1e-20 104.8 130 40.8
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 5.6e-20 102.4 82 53.7
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 1.0e-18 98.2 112 41.1
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 1.0e-18 98.2 112 41.1
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 3.1e-18 96.7 127 40.2
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 8.9e-18 95.1 127 38.6
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 8.9e-18 95.1 127 38.6
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 2.0e-17 94.0 112 40.2
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 7.5e-17 92.0 101 45.5
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 2.2e-16 90.5 195 30.8
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 2.2e-16 90.5 124 41.1
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 7.0e-15 85.5 117 37.6
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 9.2e-15 85.1 101 40.6
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 1.0e-13 81.6 77 50.6
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 1.3e-13 81.3 147 32.7
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 8.0e-11 72.0 62 51.6
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 8.0e-11 72.0 62 51.6
CAN.G694.55 Capsicum annuum HOM05D000184 ORTHO05D000032 3.1e-10 70.1 41 80.5
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 6.8e-10 68.9 50 60.0
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 9.8e-09 65.1 221 27.1


User provided reference genes

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